Wall clock time and date at job start Tue Mar 31 2020 17:48:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38347 * 119.40950 * 2 1 4 4 C 1.38336 * 119.46255 * 180.02562 * 3 2 1 5 5 C 1.50698 * 120.83033 * 179.97438 * 4 3 2 6 6 C 1.39995 * 118.34577 * 359.74449 * 4 3 2 7 7 C 1.47525 * 120.59404 * 180.26832 * 6 4 3 8 8 O 1.21593 * 119.99837 * 270.20561 * 7 6 4 9 9 N 1.34775 * 119.99951 * 90.21290 * 7 6 4 10 10 C 1.46508 * 119.99719 * 179.97438 * 9 7 6 11 11 H 1.08999 * 109.49828 * 34.93676 * 10 9 7 12 12 C 1.53034 * 109.49457 * 274.83537 * 10 9 7 13 13 C 1.53040 * 109.54044 * 301.41213 * 12 10 9 14 14 C 1.53193 * 109.31440 * 298.64220 * 13 12 10 15 15 N 1.46918 * 108.77784 * 54.63122 * 14 13 12 16 16 C 1.36934 * 120.63254 * 126.41497 * 15 14 13 17 17 H 1.08001 * 120.00011 * 221.18349 * 16 15 14 18 18 C 1.38813 * 119.99671 * 41.18336 * 16 15 14 19 19 N 1.31620 * 119.99847 * 214.88544 * 18 16 15 20 20 Si 1.86797 * 120.00410 * 34.88654 * 18 16 15 21 21 H 1.48504 * 109.46844 * 84.62453 * 20 18 16 22 22 H 1.48494 * 109.47356 * 204.62543 * 20 18 16 23 23 H 1.48500 * 109.46975 * 324.62845 * 20 18 16 24 24 C 1.46930 * 118.73988 * 306.39205 * 15 14 13 25 25 H 1.09000 * 109.70482 * 293.75697 * 24 15 14 26 26 C 1.52997 * 109.58878 * 173.39491 * 24 15 14 27 27 C 1.40278 * 118.80425 * 0.47384 * 6 4 3 28 28 O 1.35423 * 119.79780 * 179.79724 * 27 6 4 29 29 N 1.31891 * 119.40586 * 179.97438 * 2 1 3 30 30 H 1.08993 * 109.46702 * 270.02289 * 1 2 3 31 31 H 1.08993 * 109.46410 * 30.02787 * 1 2 3 32 32 H 1.09001 * 109.46632 * 150.02142 * 1 2 3 33 33 H 1.07998 * 120.27094 * 0.02562 * 3 2 1 34 34 H 1.09006 * 109.47068 * 90.00086 * 5 4 3 35 35 H 1.08994 * 109.47697 * 209.99570 * 5 4 3 36 36 H 1.09006 * 109.47357 * 330.00276 * 5 4 3 37 37 H 0.97001 * 119.99810 * 359.97438 * 9 7 6 38 38 H 1.08995 * 109.46276 * 61.43949 * 12 10 9 39 39 H 1.09006 * 109.45419 * 181.39645 * 12 10 9 40 40 H 1.09000 * 109.49779 * 178.68420 * 13 12 10 41 41 H 1.08999 * 109.52316 * 58.60324 * 13 12 10 42 42 H 1.09009 * 109.58053 * 294.84282 * 14 13 12 43 43 H 1.09000 * 109.58914 * 174.42244 * 14 13 12 44 44 H 0.96992 * 120.00356 * 179.97438 * 19 18 16 45 45 H 1.09000 * 109.47409 * 300.71045 * 26 24 15 46 46 H 1.09004 * 109.47394 * 60.71133 * 26 24 15 47 47 H 1.09001 * 109.47195 * 180.71588 * 26 24 15 48 48 H 0.96699 * 114.00403 * 269.72231 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1864 1.2052 0.0000 4 6 3.5698 1.2065 -0.0005 5 6 4.3409 2.5012 -0.0011 6 6 4.2356 -0.0250 0.0044 7 6 5.7098 -0.0815 0.0100 8 8 6.3213 -0.1031 -1.0407 9 7 6.3786 -0.1093 1.1798 10 6 7.8426 -0.1659 1.1853 11 1 8.2321 0.4092 0.3453 12 6 8.2978 -1.6219 1.0633 13 6 7.7237 -2.4367 2.2246 14 6 8.2517 -1.8743 3.5481 15 7 7.9444 -0.4388 3.6081 16 6 7.2725 0.0866 4.6793 17 1 6.5050 0.8304 4.5234 18 6 7.5778 -0.3367 5.9656 19 7 6.6269 -0.4302 6.8707 20 14 9.3383 -0.7735 6.4120 21 1 10.0743 0.4604 6.7878 22 1 9.3387 -1.7184 7.5575 23 1 10.0015 -1.4095 5.2454 24 6 8.3720 0.4223 2.4970 25 1 9.4606 0.4666 2.4644 26 6 7.8069 1.8305 2.6926 27 6 3.4758 -1.2042 -0.0004 28 8 4.0992 -2.4064 0.0001 29 7 2.1546 -1.1490 0.0005 30 1 -0.3632 0.0004 1.0276 31 1 -0.3632 0.8897 -0.5143 32 1 -0.3632 -0.8902 -0.5135 33 1 1.6412 2.1375 0.0004 34 1 4.5272 2.8136 1.0264 35 1 5.2913 2.3579 -0.5152 36 1 3.7620 3.2687 -0.5149 37 1 5.8907 -0.0918 2.0180 38 1 7.9431 -2.0354 0.1192 39 1 9.3866 -1.6656 1.0924 40 1 8.0290 -3.4783 2.1242 41 1 6.6356 -2.3737 2.2110 42 1 9.3307 -2.0195 3.6021 43 1 7.7698 -2.3863 4.3810 44 1 6.8401 -0.7263 7.7694 45 1 6.7185 1.7834 2.7299 46 1 8.1847 2.2473 3.6263 47 1 8.1147 2.4643 1.8610 48 1 4.2799 -2.7562 -0.8832 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000993677303.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:48:04 Heat of formation + Delta-G solvation = -48.670760 kcal Electronic energy + Delta-G solvation = -30552.030248 eV Core-core repulsion = 26606.610565 eV Total energy + Delta-G solvation = -3945.419684 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.05115 -40.77992 -39.11988 -38.42066 -35.58849 -35.24799 -34.16090 -33.48577 -32.80621 -31.68149 -29.38194 -28.50139 -27.83378 -26.65711 -24.73813 -23.91605 -22.92896 -22.32627 -21.63870 -20.40096 -19.50938 -18.96296 -18.38934 -18.22707 -17.13025 -16.94700 -16.61009 -16.05911 -15.92316 -15.74092 -15.23218 -15.19066 -14.88971 -14.69635 -14.49231 -14.32128 -14.21644 -13.97378 -13.90631 -13.86381 -13.50101 -13.23315 -12.94959 -12.87253 -12.83473 -12.75409 -12.63546 -12.61584 -12.34236 -12.17076 -11.92309 -11.57016 -11.48469 -11.30283 -11.13897 -10.61542 -10.45488 -10.43929 -9.98423 -9.84030 -8.60788 -8.21818 -5.47945 -0.26786 0.05482 1.39607 1.47483 1.48010 1.54719 2.19052 2.34140 2.50884 2.64728 2.98623 3.39699 3.44816 3.56922 3.68155 3.96907 3.98378 4.05675 4.14044 4.21888 4.31422 4.31708 4.52030 4.52908 4.59864 4.62047 4.66502 4.67273 4.81563 4.90509 4.91326 4.95304 4.97370 5.02317 5.08253 5.12121 5.14115 5.18570 5.25512 5.31487 5.44029 5.50042 5.53537 5.63610 5.97300 6.29729 6.42736 6.53046 6.81759 7.03796 7.14253 7.68945 8.19755 8.97398 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.013910 B = 0.004034 C = 0.003820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2012.427755 B = 6939.649839 C = 7327.516946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.157 3.843 3 C -0.179 4.179 4 C 0.005 3.995 5 C -0.121 4.121 6 C -0.223 4.223 7 C 0.583 3.417 8 O -0.574 6.574 9 N -0.684 5.684 10 C 0.138 3.862 11 H 0.089 0.911 12 C -0.114 4.114 13 C -0.123 4.123 14 C 0.142 3.858 15 N -0.602 5.602 16 C -0.252 4.252 17 H 0.053 0.947 18 C 0.003 3.997 19 N -0.926 5.926 20 Si 0.897 3.103 21 H -0.295 1.295 22 H -0.309 1.309 23 H -0.243 1.243 24 C 0.153 3.847 25 H 0.054 0.946 26 C -0.126 4.126 27 C 0.338 3.662 28 O -0.488 6.488 29 N -0.532 5.532 30 H 0.091 0.909 31 H 0.110 0.890 32 H 0.076 0.924 33 H 0.183 0.817 34 H 0.089 0.911 35 H 0.060 0.940 36 H 0.110 0.890 37 H 0.404 0.596 38 H 0.057 0.943 39 H 0.080 0.920 40 H 0.070 0.930 41 H 0.045 0.955 42 H 0.031 0.969 43 H 0.039 0.961 44 H 0.260 0.740 45 H 0.046 0.954 46 H 0.047 0.953 47 H 0.070 0.930 48 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.462 4.234 -16.839 18.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.019 3.981 3 C -0.199 4.199 4 C -0.003 4.003 5 C -0.177 4.177 6 C -0.230 4.230 7 C 0.368 3.632 8 O -0.455 6.455 9 N -0.332 5.332 10 C 0.032 3.968 11 H 0.107 0.893 12 C -0.153 4.153 13 C -0.162 4.162 14 C 0.017 3.983 15 N -0.327 5.327 16 C -0.381 4.381 17 H 0.070 0.930 18 C -0.196 4.196 19 N -0.568 5.568 20 Si 0.725 3.275 21 H -0.222 1.222 22 H -0.236 1.236 23 H -0.167 1.167 24 C 0.048 3.952 25 H 0.071 0.929 26 C -0.184 4.184 27 C 0.159 3.841 28 O -0.298 6.298 29 N -0.253 5.253 30 H 0.109 0.891 31 H 0.129 0.871 32 H 0.095 0.905 33 H 0.201 0.799 34 H 0.107 0.893 35 H 0.079 0.921 36 H 0.128 0.872 37 H 0.239 0.761 38 H 0.076 0.924 39 H 0.098 0.902 40 H 0.088 0.912 41 H 0.064 0.936 42 H 0.049 0.951 43 H 0.058 0.942 44 H 0.069 0.931 45 H 0.065 0.935 46 H 0.066 0.934 47 H 0.088 0.912 48 H 0.277 0.723 Dipole moment (debyes) X Y Z Total from point charges -7.475 3.430 -16.804 18.709 hybrid contribution 1.272 -0.075 0.978 1.606 sum -6.203 3.355 -15.826 17.327 Atomic orbital electron populations 1.20920 0.85496 1.05165 1.04449 1.21902 0.98749 0.86812 0.90602 1.22177 0.92976 1.00842 1.03865 1.20621 0.94753 0.94096 0.90854 1.20978 0.99809 0.92832 1.04086 1.20941 0.94491 0.95165 1.12373 1.17858 0.86384 0.75173 0.83757 1.90738 1.69839 1.52637 1.32264 1.46007 1.07699 1.71508 1.08018 1.21491 0.79374 0.97009 0.98905 0.89317 1.21725 1.01017 0.94815 0.97734 1.21838 1.00052 0.98941 0.95344 1.21288 0.96974 0.84171 0.95868 1.44479 1.66553 1.02343 1.19354 1.18435 1.12217 1.23434 0.84047 0.92950 1.26022 0.98963 0.98535 0.96078 1.70162 1.33032 1.48192 1.05382 0.86509 0.86008 0.76997 0.78017 1.22218 1.23639 1.16690 1.21027 0.96830 0.91084 0.86289 0.92866 1.21674 1.00689 0.94950 1.01066 1.19150 0.86863 0.84569 0.93499 1.84688 1.76831 1.32892 1.35347 1.67089 1.08887 1.32047 1.17241 0.89099 0.87128 0.90459 0.79942 0.89283 0.92143 0.87172 0.76061 0.92439 0.90185 0.91155 0.93625 0.95144 0.94222 0.93093 0.93473 0.93383 0.91155 0.72311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.38 10.16 71.24 0.72 -0.65 16 2 C 0.16 3.43 6.78 42.58 0.29 3.72 16 3 C -0.18 -3.42 9.41 22.32 0.21 -3.21 16 4 C 0.00 0.11 5.95 -19.42 -0.12 0.00 16 5 C -0.12 -2.33 9.68 71.24 0.69 -1.64 16 6 C -0.22 -6.69 5.66 -19.91 -0.11 -6.80 16 7 C 0.58 19.05 5.39 86.69 0.47 19.52 16 8 O -0.57 -21.08 16.77 -4.01 -0.07 -21.15 16 9 N -0.68 -22.62 3.46 -445.33 -1.54 -24.16 16 10 C 0.14 4.41 2.33 45.07 0.10 4.52 16 11 H 0.09 2.74 7.58 -2.39 -0.02 2.72 16 12 C -0.11 -3.55 5.58 30.62 0.17 -3.38 16 13 C -0.12 -4.25 5.93 30.67 0.18 -4.06 16 14 C 0.14 5.79 4.59 86.36 0.40 6.19 16 15 N -0.60 -25.75 2.12 -675.22 -1.43 -27.19 16 16 C -0.25 -12.92 8.43 84.03 0.71 -12.21 16 17 H 0.05 2.91 6.81 -2.91 -0.02 2.89 16 18 C 0.00 0.17 4.82 84.86 0.41 0.58 16 19 N -0.93 -55.14 13.97 21.65 0.30 -54.84 16 20 Si 0.90 43.29 27.40 68.60 1.88 45.17 16 21 H -0.29 -14.38 7.11 99.48 0.71 -13.67 16 22 H -0.31 -15.37 7.11 99.48 0.71 -14.66 16 23 H -0.24 -10.89 5.24 99.48 0.52 -10.36 16 24 C 0.15 5.39 3.20 44.97 0.14 5.54 16 25 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 26 C -0.13 -4.20 7.85 71.98 0.56 -3.64 16 27 C 0.34 10.45 7.77 85.13 0.66 11.11 16 28 O -0.49 -14.66 13.01 -87.19 -1.13 -15.80 16 29 N -0.53 -15.34 10.28 -296.06 -3.04 -18.38 16 30 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.11 0.76 8.07 -2.39 -0.02 0.74 16 32 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.18 1.91 8.06 -2.91 -0.02 1.89 16 34 H 0.09 1.71 8.14 -2.38 -0.02 1.69 16 35 H 0.06 1.38 7.20 -2.39 -0.02 1.37 16 36 H 0.11 1.39 8.10 -2.38 -0.02 1.37 16 37 H 0.40 14.97 7.76 -92.71 -0.72 14.25 16 38 H 0.06 1.79 8.14 -2.39 -0.02 1.78 16 39 H 0.08 2.24 8.14 -2.38 -0.02 2.22 16 40 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 41 H 0.04 1.76 7.53 -2.39 -0.02 1.74 16 42 H 0.03 1.22 6.71 -2.38 -0.02 1.20 16 43 H 0.04 1.82 7.02 -2.39 -0.02 1.80 16 44 H 0.26 14.93 8.31 -92.71 -0.77 14.16 16 45 H 0.05 1.64 6.36 -2.39 -0.02 1.62 16 46 H 0.05 1.77 7.71 -2.39 -0.02 1.75 16 47 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 48 H 0.42 8.80 9.06 -74.06 -0.67 8.13 16 Total: -1.00 -70.03 381.40 -0.13 -70.16 By element: Atomic # 1 Polarization: 31.18 SS G_CDS: -0.58 Total: 30.60 kcal Atomic # 6 Polarization: 10.09 SS G_CDS: 5.49 Total: 15.58 kcal Atomic # 7 Polarization: -118.85 SS G_CDS: -5.72 Total: -124.57 kcal Atomic # 8 Polarization: -35.74 SS G_CDS: -1.20 Total: -36.95 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 1.88 Total: 45.17 kcal Total: -70.03 -0.13 -70.16 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993677303.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.490 kcal (2) G-P(sol) polarization free energy of solvation -70.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds