Wall clock time and date at job start Tue Mar 31 2020 17:48:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38354 * 119.40866 * 2 1 4 4 C 1.38338 * 119.46072 * 180.02562 * 3 2 1 5 5 C 1.50704 * 120.82305 * 180.02562 * 4 3 2 6 6 C 1.39981 * 118.34760 * 0.02562 * 4 3 2 7 7 C 1.47531 * 120.59534 * 179.97438 * 6 4 3 8 8 O 1.21589 * 119.99967 * 270.02367 * 7 6 4 9 9 N 1.34775 * 119.99854 * 90.01897 * 7 6 4 10 10 C 1.46501 * 119.99717 * 180.02562 * 9 7 6 11 11 H 1.08997 * 109.49774 * 35.06345 * 10 9 7 12 12 C 1.53043 * 109.49989 * 274.99826 * 10 9 7 13 13 C 1.53032 * 109.54163 * 178.68261 * 12 10 9 14 14 C 1.53197 * 109.31082 * 61.36575 * 13 12 10 15 15 N 1.46923 * 108.77855 * 305.36903 * 14 13 12 16 16 C 1.36938 * 120.62794 * 233.58718 * 15 14 13 17 17 H 1.08004 * 120.00013 * 150.16425 * 16 15 14 18 18 C 1.38811 * 120.00430 * 330.16187 * 16 15 14 19 19 N 1.31621 * 119.99639 * 344.49916 * 18 16 15 20 20 Si 1.86801 * 120.00274 * 164.49806 * 18 16 15 21 21 H 1.48498 * 109.47095 * 90.00017 * 20 18 16 22 22 H 1.48502 * 109.47003 * 210.00319 * 20 18 16 23 23 H 1.48499 * 109.46701 * 330.00096 * 20 18 16 24 24 C 1.46924 * 118.73921 * 53.60232 * 15 14 13 25 25 H 1.08997 * 109.58534 * 66.18591 * 24 15 14 26 26 C 1.53005 * 109.58565 * 186.60740 * 24 15 14 27 27 C 1.40272 * 118.80816 * 359.97438 * 6 4 3 28 28 O 1.35426 * 119.79907 * 179.97438 * 27 6 4 29 29 N 1.31884 * 119.41114 * 180.28152 * 2 1 3 30 30 H 1.09002 * 109.46870 * 90.00026 * 1 2 3 31 31 H 1.08998 * 109.46966 * 209.99845 * 1 2 3 32 32 H 1.09002 * 109.47101 * 329.99740 * 1 2 3 33 33 H 1.08004 * 120.27014 * 0.02562 * 3 2 1 34 34 H 1.09007 * 109.46688 * 269.97446 * 5 4 3 35 35 H 1.09000 * 109.47204 * 29.97684 * 5 4 3 36 36 H 1.08999 * 109.46661 * 149.97825 * 5 4 3 37 37 H 0.97002 * 120.00196 * 0.02562 * 9 7 6 38 38 H 1.09000 * 109.45813 * 298.70947 * 12 10 9 39 39 H 1.09004 * 109.45396 * 58.67862 * 12 10 9 40 40 H 1.09001 * 109.50347 * 181.31591 * 13 12 10 41 41 H 1.09002 * 109.49828 * 301.38838 * 13 12 10 42 42 H 1.08999 * 109.58666 * 65.15352 * 14 13 12 43 43 H 1.09005 * 109.58803 * 185.57644 * 14 13 12 44 44 H 0.96992 * 119.99896 * 179.97438 * 19 18 16 45 45 H 1.09003 * 109.46742 * 179.28973 * 26 24 15 46 46 H 1.09001 * 109.47008 * 299.29101 * 26 24 15 47 47 H 1.08994 * 109.47166 * 59.29398 * 26 24 15 48 48 H 0.96701 * 114.00661 * 90.00339 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1864 1.2053 0.0000 4 6 3.5698 1.2065 -0.0005 5 6 4.3408 2.5014 0.0000 6 6 4.2355 -0.0248 -0.0016 7 6 5.7098 -0.0813 -0.0028 8 8 6.3164 -0.1037 -1.0563 9 7 6.3840 -0.1081 1.1639 10 6 7.8480 -0.1636 1.1627 11 1 8.2332 0.4132 0.3219 12 6 8.3039 -1.6190 1.0351 13 6 9.8328 -1.6754 1.0007 14 6 10.3902 -1.1070 2.3096 15 7 9.8404 0.2403 2.5123 16 6 10.6706 1.3066 2.7337 17 1 10.3760 2.2956 2.4152 18 6 11.8909 1.1164 3.3674 19 7 12.1250 -0.0010 4.0225 20 14 13.2006 2.4461 3.2907 21 1 13.0313 3.3744 4.4373 22 1 14.5457 1.8203 3.3548 23 1 13.0658 3.2007 2.0188 24 6 8.3829 0.4217 2.4734 25 1 7.9276 -0.0960 3.3176 26 6 8.0498 1.9135 2.5426 27 6 3.4758 -1.2040 -0.0016 28 8 4.0992 -2.4063 -0.0031 29 7 2.1547 -1.1489 -0.0056 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3633 0.8900 0.5139 33 1 1.6411 2.1376 0.0004 34 1 4.5266 2.8140 -1.0276 35 1 3.7620 3.2687 0.5142 36 1 5.2913 2.3579 0.5137 37 1 5.9000 -0.0905 2.0043 38 1 7.9385 -2.1901 1.8886 39 1 7.9042 -2.0454 0.1150 40 1 10.1563 -2.7099 0.8864 41 1 10.1998 -1.0845 0.1615 42 1 10.0986 -1.7494 3.1405 43 1 11.4774 -1.0531 2.2509 44 1 12.9778 -0.1341 4.4650 45 1 6.9687 2.0466 2.5008 46 1 8.4312 2.3280 3.4757 47 1 8.5120 2.4284 1.7005 48 1 4.2813 -2.7561 0.8798 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000993677306.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:48:13 Heat of formation + Delta-G solvation = -28.828761 kcal Electronic energy + Delta-G solvation = -29702.167304 eV Core-core repulsion = 25757.608034 eV Total energy + Delta-G solvation = -3944.559270 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.14231 -39.42163 -37.63835 -37.53996 -34.46688 -34.30468 -32.59056 -32.06762 -31.66135 -29.55783 -28.37943 -27.78800 -26.19453 -25.03768 -23.74086 -22.49663 -21.59974 -20.73776 -20.34930 -19.48106 -18.65387 -17.71890 -17.32926 -16.52016 -16.05913 -15.63512 -15.02053 -14.87567 -14.49739 -14.36128 -13.98449 -13.80121 -13.71386 -13.59014 -13.34966 -13.27373 -13.11284 -12.77358 -12.70002 -12.57397 -12.27118 -12.10713 -11.86518 -11.74874 -11.58195 -11.15980 -10.95956 -10.77583 -10.61941 -10.36445 -10.28965 -10.12761 -10.07527 -9.83637 -9.76692 -9.56625 -9.35858 -9.04685 -8.74512 -8.48682 -6.70060 -5.82931 -3.27705 0.53660 0.83137 2.62555 3.03332 3.30636 3.34854 3.36379 3.42554 3.45140 4.19395 4.25261 4.45515 4.65121 4.71816 4.91530 5.02252 5.10217 5.21709 5.25548 5.31122 5.32367 5.35356 5.47928 5.53661 5.56367 5.66025 5.75706 5.76992 5.88521 5.93671 6.03982 6.16955 6.17643 6.29275 6.34855 6.49901 6.58572 6.67111 6.72607 6.82005 6.93438 7.01771 7.20140 7.37004 7.59344 7.62822 7.64942 7.78384 8.30071 8.41965 9.16661 9.79279 10.35832 11.25815 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.021839 B = 0.002943 C = 0.002732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1281.777696 B = 9511.891011 C =10244.712196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.165 3.835 3 C -0.187 4.187 4 C 0.012 3.988 5 C -0.126 4.126 6 C -0.198 4.198 7 C 0.572 3.428 8 O -0.525 6.525 9 N -0.711 5.711 10 C 0.130 3.870 11 H 0.087 0.913 12 C -0.117 4.117 13 C -0.140 4.140 14 C 0.170 3.830 15 N -0.581 5.581 16 C -0.253 4.253 17 H 0.070 0.930 18 C 0.005 3.995 19 N -0.901 5.901 20 Si 0.901 3.099 21 H -0.287 1.287 22 H -0.290 1.290 23 H -0.279 1.279 24 C 0.168 3.832 25 H 0.027 0.973 26 C -0.137 4.137 27 C 0.354 3.646 28 O -0.472 6.472 29 N -0.507 5.507 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.144 0.856 34 H 0.086 0.914 35 H 0.080 0.920 36 H 0.078 0.922 37 H 0.395 0.605 38 H 0.054 0.946 39 H 0.051 0.949 40 H 0.052 0.948 41 H 0.056 0.944 42 H 0.019 0.981 43 H 0.087 0.913 44 H 0.254 0.746 45 H 0.037 0.963 46 H 0.064 0.936 47 H 0.055 0.945 48 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.184 1.292 -4.186 21.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.027 3.973 3 C -0.207 4.207 4 C 0.004 3.996 5 C -0.182 4.182 6 C -0.205 4.205 7 C 0.356 3.644 8 O -0.400 6.400 9 N -0.361 5.361 10 C 0.025 3.975 11 H 0.105 0.895 12 C -0.156 4.156 13 C -0.180 4.180 14 C 0.045 3.955 15 N -0.305 5.305 16 C -0.383 4.383 17 H 0.087 0.913 18 C -0.193 4.193 19 N -0.545 5.545 20 Si 0.731 3.269 21 H -0.214 1.214 22 H -0.216 1.216 23 H -0.204 1.204 24 C 0.060 3.940 25 H 0.045 0.955 26 C -0.194 4.194 27 C 0.174 3.826 28 O -0.279 6.279 29 N -0.228 5.228 30 H 0.100 0.900 31 H 0.099 0.901 32 H 0.098 0.902 33 H 0.162 0.838 34 H 0.104 0.896 35 H 0.099 0.901 36 H 0.097 0.903 37 H 0.229 0.771 38 H 0.072 0.928 39 H 0.070 0.930 40 H 0.071 0.929 41 H 0.075 0.925 42 H 0.037 0.963 43 H 0.105 0.895 44 H 0.064 0.936 45 H 0.056 0.944 46 H 0.083 0.917 47 H 0.074 0.926 48 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges -20.969 0.484 -5.446 21.670 hybrid contribution 1.015 1.067 0.849 1.700 sum -19.955 1.551 -4.596 20.536 Atomic orbital electron populations 1.20791 0.88191 1.03843 1.03505 1.21162 0.96937 0.87090 0.92111 1.21776 0.93645 0.99588 1.05727 1.20293 0.93636 0.94283 0.91362 1.20969 1.00391 0.92951 1.03906 1.20965 0.95416 0.94029 1.10120 1.17730 0.85639 0.76516 0.84544 1.90823 1.69044 1.48927 1.31224 1.46187 1.08433 1.73925 1.07523 1.21866 0.76580 0.97255 1.01822 0.89514 1.21760 0.97338 0.95850 1.00611 1.22185 0.94077 0.99911 1.01838 1.20830 0.99617 0.84431 0.90661 1.44025 0.98286 1.05412 1.82736 1.19133 0.98418 0.89044 1.31701 0.91270 1.25086 0.99954 0.97278 0.97031 1.70022 1.23686 1.26021 1.34793 0.86326 0.81429 0.81268 0.77920 1.21399 1.21555 1.20421 1.20552 0.87222 0.94232 0.91952 0.95517 1.21826 0.98210 0.96532 1.02853 1.18989 0.86318 0.84495 0.92782 1.84763 1.76621 1.32617 1.33944 1.67033 1.09144 1.30438 1.16136 0.89960 0.90143 0.90207 0.83843 0.89569 0.90120 0.90290 0.77101 0.92751 0.92989 0.92939 0.92500 0.96260 0.89478 0.93617 0.94425 0.91698 0.92600 0.73773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.64 10.16 36.01 0.37 -0.28 16 2 C 0.16 1.60 6.78 -82.53 -0.56 1.04 16 3 C -0.19 -1.65 9.41 -39.50 -0.37 -2.02 16 4 C 0.01 0.13 5.95 -103.93 -0.62 -0.49 16 5 C -0.13 -1.17 9.69 36.01 0.35 -0.82 16 6 C -0.20 -2.61 5.66 -104.69 -0.59 -3.20 16 7 C 0.57 8.85 5.39 -12.47 -0.07 8.79 16 8 O -0.52 -10.43 16.77 5.29 0.09 -10.34 16 9 N -0.71 -10.02 4.57 -54.73 -0.25 -10.27 16 10 C 0.13 2.28 1.99 -67.81 -0.14 2.14 16 11 H 0.09 1.77 7.58 -51.93 -0.39 1.37 16 12 C -0.12 -2.06 5.46 -26.69 -0.15 -2.21 16 13 C -0.14 -2.73 6.08 -26.61 -0.16 -2.89 16 14 C 0.17 3.94 5.28 -3.71 -0.02 3.92 16 15 N -0.58 -13.79 2.99 -164.77 -0.49 -14.29 16 16 C -0.25 -6.59 8.58 -15.06 -0.13 -6.72 16 17 H 0.07 1.76 6.23 -52.48 -0.33 1.43 16 18 C 0.01 0.15 4.94 -17.43 -0.09 0.06 16 19 N -0.90 -25.39 11.23 55.49 0.62 -24.76 16 20 Si 0.90 21.20 29.58 -169.99 -5.03 16.17 16 21 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 22 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 23 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 24 C 0.17 3.24 3.03 -67.60 -0.20 3.04 16 25 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 26 C -0.14 -2.40 7.84 37.16 0.29 -2.11 16 27 C 0.35 4.66 7.77 -16.62 -0.13 4.53 16 28 O -0.47 -6.01 13.01 -17.97 -0.23 -6.24 16 29 N -0.51 -6.30 10.28 -9.21 -0.09 -6.39 16 30 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.08 0.30 8.07 -51.93 -0.42 -0.12 16 33 H 0.14 0.80 8.06 -52.48 -0.42 0.38 16 34 H 0.09 0.81 8.14 -51.92 -0.42 0.39 16 35 H 0.08 0.54 8.10 -51.93 -0.42 0.11 16 36 H 0.08 0.85 7.19 -51.93 -0.37 0.48 16 37 H 0.40 4.59 8.59 -40.82 -0.35 4.24 16 38 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 42 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 43 H 0.09 2.27 6.15 -51.93 -0.32 1.95 16 44 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 45 H 0.04 0.53 7.78 -51.93 -0.40 0.12 16 46 H 0.06 1.23 7.67 -51.93 -0.40 0.83 16 47 H 0.05 1.04 7.40 -51.93 -0.38 0.65 16 48 H 0.40 3.18 9.06 45.56 0.41 3.60 16 LS Contribution 387.23 15.07 5.84 5.84 Total: -1.00 -33.41 387.23 -8.51 -41.91 By element: Atomic # 1 Polarization: 12.34 SS G_CDS: -6.74 Total: 5.60 kcal Atomic # 6 Polarization: 4.99 SS G_CDS: -2.21 Total: 2.78 kcal Atomic # 7 Polarization: -55.50 SS G_CDS: -0.21 Total: -55.71 kcal Atomic # 8 Polarization: -16.44 SS G_CDS: -0.15 Total: -16.58 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.03 Total: 16.17 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -33.41 -8.51 -41.91 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993677306.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.086 kcal (2) G-P(sol) polarization free energy of solvation -33.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds