Wall clock time and date at job start Tue Mar 31 2020 17:48:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38354 * 119.40866 * 2 1 4 4 C 1.38338 * 119.46072 * 180.02562 * 3 2 1 5 5 C 1.50704 * 120.82305 * 180.02562 * 4 3 2 6 6 C 1.39981 * 118.34760 * 0.02562 * 4 3 2 7 7 C 1.47531 * 120.59534 * 179.97438 * 6 4 3 8 8 O 1.21589 * 119.99967 * 270.02367 * 7 6 4 9 9 N 1.34775 * 119.99854 * 90.01897 * 7 6 4 10 10 C 1.46501 * 119.99717 * 180.02562 * 9 7 6 11 11 H 1.08997 * 109.49774 * 35.06345 * 10 9 7 12 12 C 1.53043 * 109.49989 * 274.99826 * 10 9 7 13 13 C 1.53032 * 109.54163 * 178.68261 * 12 10 9 14 14 C 1.53197 * 109.31082 * 61.36575 * 13 12 10 15 15 N 1.46923 * 108.77855 * 305.36903 * 14 13 12 16 16 C 1.36938 * 120.62794 * 233.58718 * 15 14 13 17 17 H 1.08004 * 120.00013 * 150.16425 * 16 15 14 18 18 C 1.38811 * 120.00430 * 330.16187 * 16 15 14 19 19 N 1.31621 * 119.99639 * 344.49916 * 18 16 15 20 20 Si 1.86801 * 120.00274 * 164.49806 * 18 16 15 21 21 H 1.48498 * 109.47095 * 90.00017 * 20 18 16 22 22 H 1.48502 * 109.47003 * 210.00319 * 20 18 16 23 23 H 1.48499 * 109.46701 * 330.00096 * 20 18 16 24 24 C 1.46924 * 118.73921 * 53.60232 * 15 14 13 25 25 H 1.08997 * 109.58534 * 66.18591 * 24 15 14 26 26 C 1.53005 * 109.58565 * 186.60740 * 24 15 14 27 27 C 1.40272 * 118.80816 * 359.97438 * 6 4 3 28 28 O 1.35426 * 119.79907 * 179.97438 * 27 6 4 29 29 N 1.31884 * 119.41114 * 180.28152 * 2 1 3 30 30 H 1.09002 * 109.46870 * 90.00026 * 1 2 3 31 31 H 1.08998 * 109.46966 * 209.99845 * 1 2 3 32 32 H 1.09002 * 109.47101 * 329.99740 * 1 2 3 33 33 H 1.08004 * 120.27014 * 0.02562 * 3 2 1 34 34 H 1.09007 * 109.46688 * 269.97446 * 5 4 3 35 35 H 1.09000 * 109.47204 * 29.97684 * 5 4 3 36 36 H 1.08999 * 109.46661 * 149.97825 * 5 4 3 37 37 H 0.97002 * 120.00196 * 0.02562 * 9 7 6 38 38 H 1.09000 * 109.45813 * 298.70947 * 12 10 9 39 39 H 1.09004 * 109.45396 * 58.67862 * 12 10 9 40 40 H 1.09001 * 109.50347 * 181.31591 * 13 12 10 41 41 H 1.09002 * 109.49828 * 301.38838 * 13 12 10 42 42 H 1.08999 * 109.58666 * 65.15352 * 14 13 12 43 43 H 1.09005 * 109.58803 * 185.57644 * 14 13 12 44 44 H 0.96992 * 119.99896 * 179.97438 * 19 18 16 45 45 H 1.09003 * 109.46742 * 179.28973 * 26 24 15 46 46 H 1.09001 * 109.47008 * 299.29101 * 26 24 15 47 47 H 1.08994 * 109.47166 * 59.29398 * 26 24 15 48 48 H 0.96701 * 114.00661 * 90.00339 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1864 1.2053 0.0000 4 6 3.5698 1.2065 -0.0005 5 6 4.3408 2.5014 0.0000 6 6 4.2355 -0.0248 -0.0016 7 6 5.7098 -0.0813 -0.0028 8 8 6.3164 -0.1037 -1.0563 9 7 6.3840 -0.1081 1.1639 10 6 7.8480 -0.1636 1.1627 11 1 8.2332 0.4132 0.3219 12 6 8.3039 -1.6190 1.0351 13 6 9.8328 -1.6754 1.0007 14 6 10.3902 -1.1070 2.3096 15 7 9.8404 0.2403 2.5123 16 6 10.6706 1.3066 2.7337 17 1 10.3760 2.2956 2.4152 18 6 11.8909 1.1164 3.3674 19 7 12.1250 -0.0010 4.0225 20 14 13.2006 2.4461 3.2907 21 1 13.0313 3.3744 4.4373 22 1 14.5457 1.8203 3.3548 23 1 13.0658 3.2007 2.0188 24 6 8.3829 0.4217 2.4734 25 1 7.9276 -0.0960 3.3176 26 6 8.0498 1.9135 2.5426 27 6 3.4758 -1.2040 -0.0016 28 8 4.0992 -2.4063 -0.0031 29 7 2.1547 -1.1489 -0.0056 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3633 0.8900 0.5139 33 1 1.6411 2.1376 0.0004 34 1 4.5266 2.8140 -1.0276 35 1 3.7620 3.2687 0.5142 36 1 5.2913 2.3579 0.5137 37 1 5.9000 -0.0905 2.0043 38 1 7.9385 -2.1901 1.8886 39 1 7.9042 -2.0454 0.1150 40 1 10.1563 -2.7099 0.8864 41 1 10.1998 -1.0845 0.1615 42 1 10.0986 -1.7494 3.1405 43 1 11.4774 -1.0531 2.2509 44 1 12.9778 -0.1341 4.4650 45 1 6.9687 2.0466 2.5008 46 1 8.4312 2.3280 3.4757 47 1 8.5120 2.4284 1.7005 48 1 4.2813 -2.7561 0.8798 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000993677306.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:48:12 Heat of formation + Delta-G solvation = -54.334206 kcal Electronic energy + Delta-G solvation = -29703.273303 eV Core-core repulsion = 25757.608034 eV Total energy + Delta-G solvation = -3945.665269 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -42.07688 -40.68965 -39.14866 -38.44455 -35.92585 -35.28522 -34.23244 -33.42136 -32.78332 -31.10582 -29.35879 -28.50956 -27.74038 -26.84914 -24.77853 -23.80124 -22.65299 -22.35025 -21.53767 -21.07700 -19.53137 -18.89963 -18.30948 -18.14607 -17.46416 -16.90254 -16.55270 -15.98239 -15.74690 -15.61941 -15.36074 -15.20895 -14.92844 -14.78059 -14.47022 -14.32730 -14.22075 -13.98842 -13.90840 -13.35254 -13.28707 -13.22155 -12.97770 -12.81366 -12.79477 -12.73414 -12.61764 -12.50669 -12.39050 -12.03670 -11.85112 -11.79369 -11.67958 -11.35703 -11.13472 -10.61291 -10.53167 -10.49008 -10.09930 -9.85427 -8.64819 -7.85788 -5.31944 -0.28693 0.03917 1.42303 1.46241 1.49322 1.57469 2.00044 2.36256 2.53525 2.54866 3.30392 3.40971 3.55908 3.58225 3.70807 3.89381 3.97695 4.04099 4.19453 4.21445 4.29949 4.35693 4.49918 4.52293 4.59650 4.61241 4.65028 4.75724 4.82995 4.87028 4.90336 4.98228 5.02367 5.03591 5.11356 5.15031 5.19691 5.20294 5.26290 5.43815 5.46495 5.53369 5.57264 5.70929 5.75587 6.40541 6.42332 6.47989 6.81036 7.11245 7.17057 7.86477 8.38375 9.21402 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.021839 B = 0.002943 C = 0.002732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1281.777696 B = 9511.891011 C =10244.712196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.161 3.839 3 C -0.175 4.175 4 C 0.009 3.991 5 C -0.125 4.125 6 C -0.221 4.221 7 C 0.582 3.418 8 O -0.574 6.574 9 N -0.694 5.694 10 C 0.147 3.853 11 H 0.058 0.942 12 C -0.109 4.109 13 C -0.130 4.130 14 C 0.177 3.823 15 N -0.600 5.600 16 C -0.253 4.253 17 H 0.073 0.927 18 C -0.048 4.048 19 N -0.933 5.933 20 Si 0.960 3.040 21 H -0.283 1.283 22 H -0.296 1.296 23 H -0.274 1.274 24 C 0.166 3.834 25 H 0.034 0.966 26 C -0.128 4.128 27 C 0.342 3.658 28 O -0.491 6.491 29 N -0.530 5.530 30 H 0.092 0.908 31 H 0.076 0.924 32 H 0.110 0.890 33 H 0.184 0.816 34 H 0.083 0.917 35 H 0.113 0.887 36 H 0.060 0.940 37 H 0.411 0.589 38 H 0.069 0.931 39 H 0.052 0.948 40 H 0.072 0.928 41 H 0.043 0.957 42 H 0.005 0.995 43 H 0.053 0.947 44 H 0.249 0.751 45 H 0.075 0.925 46 H 0.050 0.950 47 H 0.042 0.958 48 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.317 2.748 -4.197 24.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.023 3.977 3 C -0.194 4.194 4 C 0.001 3.999 5 C -0.181 4.181 6 C -0.227 4.227 7 C 0.368 3.632 8 O -0.453 6.453 9 N -0.345 5.345 10 C 0.041 3.959 11 H 0.077 0.923 12 C -0.148 4.148 13 C -0.170 4.170 14 C 0.051 3.949 15 N -0.323 5.323 16 C -0.384 4.384 17 H 0.090 0.910 18 C -0.243 4.243 19 N -0.579 5.579 20 Si 0.788 3.212 21 H -0.210 1.210 22 H -0.222 1.222 23 H -0.199 1.199 24 C 0.059 3.941 25 H 0.052 0.948 26 C -0.185 4.185 27 C 0.163 3.837 28 O -0.301 6.301 29 N -0.250 5.250 30 H 0.111 0.889 31 H 0.095 0.905 32 H 0.128 0.872 33 H 0.201 0.799 34 H 0.101 0.899 35 H 0.132 0.868 36 H 0.079 0.921 37 H 0.248 0.752 38 H 0.088 0.912 39 H 0.071 0.929 40 H 0.090 0.910 41 H 0.062 0.938 42 H 0.023 0.977 43 H 0.072 0.928 44 H 0.058 0.942 45 H 0.094 0.906 46 H 0.069 0.931 47 H 0.061 0.939 48 H 0.280 0.720 Dipole moment (debyes) X Y Z Total from point charges -24.151 1.946 -5.427 24.829 hybrid contribution 1.846 0.614 0.838 2.118 sum -22.305 2.561 -4.589 22.916 Atomic orbital electron populations 1.20931 0.85480 1.05215 1.04505 1.21900 0.98697 0.86738 0.90342 1.22172 0.92736 1.00894 1.03632 1.20562 0.94729 0.93775 0.90860 1.21017 0.99954 0.93191 1.03949 1.20796 0.93504 0.95364 1.13075 1.18033 0.86660 0.74878 0.83672 1.90796 1.70382 1.51175 1.32938 1.45910 1.06922 1.73370 1.08283 1.21377 0.78439 0.96570 0.99527 0.92335 1.21680 0.95781 0.96114 1.01220 1.22026 0.95377 1.00503 0.99057 1.20617 0.97811 0.84520 0.91909 1.44260 1.00183 1.04994 1.82902 1.19425 0.98823 0.89771 1.30338 0.90967 1.25763 1.01872 0.99186 0.97478 1.70161 1.23752 1.27775 1.36208 0.85395 0.78756 0.79036 0.77984 1.20960 1.22214 1.19869 1.20706 0.84795 0.95766 0.92809 0.94817 1.21738 1.00577 0.94815 1.01398 1.19092 0.86809 0.84401 0.93426 1.84711 1.76830 1.32910 1.35645 1.67116 1.08684 1.32030 1.17217 0.88941 0.90470 0.87189 0.79855 0.89864 0.86798 0.92064 0.75219 0.91235 0.92950 0.90980 0.93829 0.97654 0.92845 0.94233 0.90588 0.93136 0.93920 0.71966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.87 10.16 71.24 0.72 -0.15 16 2 C 0.16 2.63 6.78 42.58 0.29 2.92 16 3 C -0.18 -2.40 9.41 22.32 0.21 -2.19 16 4 C 0.01 0.16 5.95 -19.42 -0.12 0.05 16 5 C -0.12 -2.00 9.69 71.24 0.69 -1.31 16 6 C -0.22 -5.55 5.66 -19.91 -0.11 -5.66 16 7 C 0.58 17.75 5.39 86.69 0.47 18.22 16 8 O -0.57 -23.13 16.77 -4.00 -0.07 -23.20 16 9 N -0.69 -18.89 4.57 -445.33 -2.04 -20.93 16 10 C 0.15 5.11 1.99 45.07 0.09 5.20 16 11 H 0.06 2.42 7.58 -2.39 -0.02 2.40 16 12 C -0.11 -3.80 5.46 30.62 0.17 -3.64 16 13 C -0.13 -5.11 6.08 30.67 0.19 -4.92 16 14 C 0.18 8.43 5.28 86.36 0.46 8.88 16 15 N -0.60 -28.87 2.99 -675.21 -2.02 -30.89 16 16 C -0.25 -13.37 8.58 84.03 0.72 -12.65 16 17 H 0.07 3.70 6.23 -2.91 -0.02 3.68 16 18 C -0.05 -2.59 4.94 84.86 0.42 -2.18 16 19 N -0.93 -54.04 11.23 21.65 0.24 -53.80 16 20 Si 0.96 44.31 29.58 68.60 2.03 46.34 16 21 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 22 H -0.30 -13.83 7.11 99.48 0.71 -13.12 16 23 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 24 C 0.17 6.32 3.03 44.98 0.14 6.46 16 25 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 26 C -0.13 -4.36 7.84 71.98 0.56 -3.79 16 27 C 0.34 8.71 7.77 85.13 0.66 9.37 16 28 O -0.49 -12.37 13.01 -87.22 -1.14 -13.51 16 29 N -0.53 -12.30 10.28 -296.07 -3.04 -15.35 16 30 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.11 0.27 8.07 -2.39 -0.02 0.25 16 33 H 0.18 0.99 8.06 -2.91 -0.02 0.97 16 34 H 0.08 1.40 8.14 -2.38 -0.02 1.38 16 35 H 0.11 1.03 8.10 -2.39 -0.02 1.01 16 36 H 0.06 1.20 7.19 -2.39 -0.02 1.18 16 37 H 0.41 8.77 8.59 -92.71 -0.80 7.97 16 38 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 39 H 0.05 1.85 8.14 -2.38 -0.02 1.83 16 40 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 41 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 42 H 0.01 0.27 8.14 -2.39 -0.02 0.25 16 43 H 0.05 2.90 6.15 -2.38 -0.01 2.88 16 44 H 0.25 14.04 8.31 -92.71 -0.77 13.27 16 45 H 0.08 1.97 7.78 -2.39 -0.02 1.95 16 46 H 0.05 1.86 7.67 -2.39 -0.02 1.84 16 47 H 0.04 1.56 7.40 -2.39 -0.02 1.54 16 48 H 0.42 6.46 9.06 -74.06 -0.67 5.79 16 Total: -1.00 -75.21 387.23 -0.95 -76.16 By element: Atomic # 1 Polarization: 21.03 SS G_CDS: -0.48 Total: 20.55 kcal Atomic # 6 Polarization: 9.06 SS G_CDS: 5.55 Total: 14.61 kcal Atomic # 7 Polarization: -114.11 SS G_CDS: -6.85 Total: -120.96 kcal Atomic # 8 Polarization: -35.50 SS G_CDS: -1.20 Total: -36.70 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.34 kcal Total: -75.21 -0.95 -76.16 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993677306.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.828 kcal (2) G-P(sol) polarization free energy of solvation -75.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds