Wall clock time and date at job start Tue Mar 31 2020 18:10:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.40194 * 120.36620 * 2 1 4 4 C 1.35355 * 119.94529 * 179.76690 * 3 2 1 5 5 N 1.35755 * 120.70348 * 0.50910 * 4 3 2 6 6 C 1.46504 * 119.62719 * 179.76415 * 5 4 3 7 7 C 1.50701 * 109.46916 * 269.72434 * 6 5 4 8 8 O 1.21288 * 119.99939 * 359.97438 * 7 6 5 9 9 N 1.34777 * 120.00159 * 179.97438 * 7 6 5 10 10 C 1.46500 * 120.00077 * 180.02562 * 9 7 6 11 11 H 1.09000 * 109.49851 * 325.06232 * 10 9 7 12 12 C 1.53036 * 109.50004 * 85.15868 * 10 9 7 13 13 C 1.53040 * 109.54192 * 181.31597 * 12 10 9 14 14 C 1.53197 * 109.31181 * 298.63935 * 13 12 10 15 15 N 1.46922 * 108.77483 * 54.62967 * 14 13 12 16 16 C 1.36941 * 120.62720 * 126.41404 * 15 14 13 17 17 H 1.07997 * 119.99701 * 208.63074 * 16 15 14 18 18 C 1.38816 * 120.00063 * 28.63538 * 16 15 14 19 19 N 1.31620 * 119.99831 * 14.71028 * 18 16 15 20 20 Si 1.86796 * 119.99949 * 194.71933 * 18 16 15 21 21 H 1.48503 * 109.47335 * 359.97438 * 20 18 16 22 22 H 1.48496 * 109.47263 * 119.99600 * 20 18 16 23 23 H 1.48509 * 109.46723 * 239.99837 * 20 18 16 24 24 C 1.46928 * 118.74238 * 306.39195 * 15 14 13 25 25 H 1.08992 * 109.58559 * 293.82075 * 24 15 14 26 26 C 1.52999 * 109.70199 * 173.46695 * 24 15 14 27 27 C 1.34660 * 120.74975 * 359.48286 * 5 4 3 28 28 O 1.22066 * 119.98567 * 180.28059 * 27 5 4 29 29 C 1.36401 * 120.36604 * 180.02562 * 2 1 3 30 30 H 1.09002 * 109.47471 * 269.98091 * 1 2 3 31 31 H 1.09000 * 109.47326 * 29.98498 * 1 2 3 32 32 H 1.08999 * 109.46919 * 149.98272 * 1 2 3 33 33 H 1.07998 * 120.02886 * 0.03766 * 3 2 1 34 34 H 1.07999 * 119.64595 * 180.27042 * 4 3 2 35 35 H 1.08997 * 109.46743 * 29.71768 * 6 5 4 36 36 H 1.08997 * 109.47038 * 149.72542 * 6 5 4 37 37 H 0.96994 * 119.99511 * 0.02562 * 9 7 6 38 38 H 1.09004 * 109.46349 * 301.34181 * 12 10 9 39 39 H 1.09007 * 109.45843 * 61.29438 * 12 10 9 40 40 H 1.08998 * 109.50002 * 178.68796 * 13 12 10 41 41 H 1.09000 * 109.49494 * 58.58532 * 13 12 10 42 42 H 1.09003 * 109.58562 * 294.84633 * 14 13 12 43 43 H 1.08995 * 109.70297 * 174.49075 * 14 13 12 44 44 H 0.97001 * 119.99575 * 179.97438 * 19 18 16 45 45 H 1.08999 * 109.47058 * 300.63789 * 26 24 15 46 46 H 1.08993 * 109.47446 * 60.64348 * 26 24 15 47 47 H 1.08999 * 109.46868 * 180.64325 * 26 24 15 48 48 H 1.07999 * 120.34985 * 0.02562 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2157 1.2096 0.0000 4 6 3.5692 1.1997 0.0048 5 7 4.2538 0.0274 -0.0008 6 6 5.7188 0.0442 -0.0007 7 6 6.2211 0.0499 -1.4215 8 8 5.4330 0.0403 -2.3434 9 7 7.5461 0.0656 -1.6677 10 6 8.0344 0.0716 -3.0489 11 1 7.3686 -0.5245 -3.6729 12 6 8.0730 1.5098 -3.5708 13 6 8.5518 1.5142 -5.0244 14 6 9.9691 0.9368 -5.0927 15 7 9.9704 -0.3896 -4.4609 16 6 10.4517 -1.4817 -5.1323 17 1 10.0623 -2.4650 -4.9134 18 6 11.4402 -1.3250 -6.0943 19 7 12.1178 -0.1988 -6.1641 20 14 11.8084 -2.7123 -7.2898 21 1 10.9145 -3.8630 -7.0032 22 1 11.5801 -2.2417 -8.6796 23 1 13.2237 -3.1352 -7.1364 24 6 9.4459 -0.5220 -3.0948 25 1 10.0917 0.0169 -2.4017 26 6 9.3936 -2.0002 -2.7034 27 6 3.6017 -1.1508 -0.0007 28 8 4.2312 -2.1965 -0.0006 29 6 2.1965 -1.1769 -0.0005 30 1 -0.3634 -0.0003 1.0277 31 1 -0.3634 0.8901 -0.5136 32 1 -0.3633 -0.8898 -0.5141 33 1 1.6822 2.1486 0.0006 34 1 4.1103 2.1343 0.0092 35 1 6.0717 0.9384 0.5130 36 1 6.0922 -0.8415 0.5132 37 1 8.1763 0.0728 -0.9304 38 1 7.0742 1.9429 -3.5162 39 1 8.7579 2.0991 -2.9611 40 1 8.5567 2.5364 -5.4027 41 1 7.8812 0.9047 -5.6301 42 1 10.6576 1.5948 -4.5623 43 1 10.2792 0.8461 -6.1336 44 1 12.8088 -0.0894 -6.8360 45 1 8.7514 -2.5382 -3.4006 46 1 10.3987 -2.4206 -2.7366 47 1 8.9934 -2.0947 -1.6939 48 1 1.6683 -2.1189 -0.0014 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000993887584.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:10:42 Heat of formation + Delta-G solvation = -16.966912 kcal Electronic energy + Delta-G solvation = -29230.871376 eV Core-core repulsion = 25286.826475 eV Total energy + Delta-G solvation = -3944.044902 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.62878 -39.63817 -37.69201 -37.14585 -35.42414 -34.36857 -32.63755 -31.76740 -30.77505 -29.78636 -29.09779 -27.18630 -25.98997 -24.99090 -23.89699 -22.50027 -21.64935 -20.73371 -20.38890 -19.46545 -17.73615 -17.67063 -17.45756 -16.39294 -16.20018 -15.63869 -15.31877 -15.12999 -14.89345 -14.41957 -14.24659 -13.95576 -13.79052 -13.71089 -13.55370 -13.35700 -13.04481 -12.85544 -12.62324 -12.52206 -12.26191 -11.96563 -11.85105 -11.72667 -11.55684 -11.13016 -10.93666 -10.76833 -10.57888 -10.37392 -10.30762 -10.13722 -10.07213 -10.02985 -9.85733 -9.59031 -9.38421 -8.75665 -8.47451 -8.12773 -6.70274 -5.80723 -3.25051 0.64040 1.72490 2.31056 2.61389 3.21024 3.36804 3.45080 3.47560 3.59769 4.26519 4.37164 4.47067 4.50141 4.66844 4.77282 4.87165 4.99826 5.12999 5.22511 5.26637 5.31470 5.36941 5.48918 5.52945 5.56338 5.73636 5.74312 5.86682 5.92442 6.04158 6.16557 6.18450 6.30450 6.32869 6.39969 6.49006 6.56999 6.66798 6.71496 6.80683 6.90098 6.96752 7.04822 7.38030 7.59687 7.66813 7.81016 7.93304 8.26672 8.43266 9.18834 9.81153 10.36478 11.27780 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.022420 B = 0.002558 C = 0.002471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.600550 B =10945.090059 C =11326.948215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.014 3.986 3 C -0.232 4.232 4 C 0.146 3.854 5 N -0.480 5.480 6 C 0.069 3.931 7 C 0.499 3.501 8 O -0.529 6.529 9 N -0.713 5.713 10 C 0.131 3.869 11 H 0.086 0.914 12 C -0.115 4.115 13 C -0.140 4.140 14 C 0.168 3.832 15 N -0.582 5.582 16 C -0.250 4.250 17 H 0.072 0.928 18 C 0.003 3.997 19 N -0.904 5.904 20 Si 0.902 3.098 21 H -0.277 1.277 22 H -0.289 1.289 23 H -0.290 1.290 24 C 0.168 3.832 25 H 0.028 0.972 26 C -0.138 4.138 27 C 0.521 3.479 28 O -0.550 6.550 29 C -0.248 4.248 30 H 0.080 0.920 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.144 0.856 34 H 0.160 0.840 35 H 0.120 0.880 36 H 0.129 0.871 37 H 0.397 0.603 38 H 0.048 0.952 39 H 0.054 0.946 40 H 0.052 0.948 41 H 0.056 0.944 42 H 0.019 0.981 43 H 0.092 0.908 44 H 0.253 0.747 45 H 0.054 0.946 46 H 0.064 0.936 47 H 0.039 0.961 48 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.690 7.210 16.229 25.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.010 3.990 3 C -0.255 4.255 4 C 0.019 3.981 5 N -0.191 5.191 6 C -0.057 4.057 7 C 0.282 3.718 8 O -0.405 6.405 9 N -0.364 5.364 10 C 0.025 3.975 11 H 0.104 0.896 12 C -0.154 4.154 13 C -0.180 4.180 14 C 0.043 3.957 15 N -0.305 5.305 16 C -0.379 4.379 17 H 0.089 0.911 18 C -0.196 4.196 19 N -0.548 5.548 20 Si 0.732 3.268 21 H -0.202 1.202 22 H -0.216 1.216 23 H -0.217 1.217 24 C 0.060 3.940 25 H 0.046 0.954 26 C -0.195 4.195 27 C 0.324 3.676 28 O -0.432 6.432 29 C -0.269 4.269 30 H 0.098 0.902 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.162 0.838 34 H 0.178 0.822 35 H 0.138 0.862 36 H 0.147 0.853 37 H 0.231 0.769 38 H 0.066 0.934 39 H 0.073 0.927 40 H 0.070 0.930 41 H 0.075 0.925 42 H 0.037 0.963 43 H 0.110 0.890 44 H 0.063 0.937 45 H 0.074 0.926 46 H 0.083 0.917 47 H 0.058 0.942 48 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -17.661 6.520 15.419 24.335 hybrid contribution 0.598 -0.430 -0.371 0.825 sum -17.063 6.089 15.048 23.552 Atomic orbital electron populations 1.20920 0.90425 1.03588 1.02952 1.20191 0.96723 0.92684 0.89373 1.20497 0.92344 0.98876 1.13780 1.21878 0.93612 0.89500 0.93073 1.45029 1.07260 1.07260 1.59520 1.21844 0.79678 1.07165 0.97020 1.20558 0.83332 0.77176 0.90735 1.90755 1.55203 1.48932 1.45590 1.46054 1.05964 1.74213 1.10125 1.21841 0.98178 0.97202 0.80230 0.89609 1.21751 0.99844 0.95996 0.97785 1.22188 1.01274 0.99899 0.94665 1.20877 0.89819 0.84686 1.00361 1.44057 1.71240 1.05792 1.09455 1.19238 1.14290 0.88069 1.16344 0.91075 1.25068 0.95990 0.97222 1.01300 1.70022 1.23632 1.25545 1.35619 0.86219 0.77696 0.81731 0.81136 1.20200 1.21554 1.21725 1.20551 0.89979 0.94460 0.88962 0.95447 1.21824 1.02316 0.96551 0.98821 1.17087 0.89353 0.82463 0.78711 1.90970 1.69114 1.30242 1.52854 1.21915 0.92277 0.99546 1.13189 0.90191 0.90782 0.90832 0.83800 0.82234 0.86222 0.85325 0.76880 0.93365 0.92724 0.92976 0.92546 0.96328 0.89021 0.93699 0.92645 0.91724 0.94209 0.83616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.70 10.03 36.01 0.36 -0.34 16 2 C 0.01 0.12 5.89 -104.55 -0.62 -0.49 16 3 C -0.23 -1.80 9.71 -39.88 -0.39 -2.19 16 4 C 0.15 1.24 10.28 -16.84 -0.17 1.06 16 5 N -0.48 -5.56 2.07 -121.06 -0.25 -5.81 16 6 C 0.07 0.69 5.82 -5.19 -0.03 0.66 16 7 C 0.50 7.18 7.86 -10.98 -0.09 7.09 16 8 O -0.53 -10.07 16.09 5.55 0.09 -9.98 16 9 N -0.71 -9.82 4.57 -53.69 -0.25 -10.07 16 10 C 0.13 2.34 2.00 -67.81 -0.14 2.21 16 11 H 0.09 1.84 7.58 -51.93 -0.39 1.44 16 12 C -0.12 -2.00 5.46 -26.69 -0.15 -2.15 16 13 C -0.14 -2.74 6.08 -26.61 -0.16 -2.90 16 14 C 0.17 3.94 5.29 -3.71 -0.02 3.92 16 15 N -0.58 -14.14 2.99 -164.78 -0.49 -14.64 16 16 C -0.25 -6.68 8.63 -15.06 -0.13 -6.81 16 17 H 0.07 1.88 6.20 -52.49 -0.33 1.56 16 18 C 0.00 0.07 4.97 -17.43 -0.09 -0.02 16 19 N -0.90 -25.74 11.09 55.49 0.62 -25.13 16 20 Si 0.90 21.70 29.58 -169.99 -5.03 16.67 16 21 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 22 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 23 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 24 C 0.17 3.35 3.03 -67.60 -0.20 3.15 16 25 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 26 C -0.14 -2.60 7.84 37.16 0.29 -2.31 16 27 C 0.52 7.64 7.40 -15.44 -0.11 7.52 16 28 O -0.55 -10.15 16.64 4.86 0.08 -10.07 16 29 C -0.25 -2.94 9.65 -39.38 -0.38 -3.32 16 30 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.07 0.34 8.10 -51.93 -0.42 -0.08 16 32 H 0.07 0.41 8.09 -51.93 -0.42 -0.01 16 33 H 0.14 0.70 8.06 -52.49 -0.42 0.28 16 34 H 0.16 0.79 8.03 -52.49 -0.42 0.37 16 35 H 0.12 0.63 8.01 -51.93 -0.42 0.22 16 36 H 0.13 1.30 7.39 -51.93 -0.38 0.91 16 37 H 0.40 4.20 8.60 -40.82 -0.35 3.84 16 38 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 41 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 42 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.09 2.42 6.01 -51.93 -0.31 2.11 16 44 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 45 H 0.05 1.13 7.41 -51.93 -0.39 0.75 16 46 H 0.06 1.29 7.66 -51.93 -0.40 0.89 16 47 H 0.04 0.63 7.78 -51.93 -0.40 0.22 16 48 H 0.15 1.59 8.06 -52.49 -0.42 1.17 16 LS Contribution 386.57 15.07 5.83 5.83 Total: -1.00 -35.99 386.57 -9.00 -44.99 By element: Atomic # 1 Polarization: 10.69 SS G_CDS: -7.57 Total: 3.12 kcal Atomic # 6 Polarization: 7.10 SS G_CDS: -2.02 Total: 5.08 kcal Atomic # 7 Polarization: -55.27 SS G_CDS: -0.37 Total: -55.64 kcal Atomic # 8 Polarization: -20.22 SS G_CDS: 0.17 Total: -20.05 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.03 Total: 16.67 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -35.99 -9.00 -44.99 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993887584.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.020 kcal (2) G-P(sol) polarization free energy of solvation -35.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds