Wall clock time and date at job start Tue Mar 31 2020 18:10:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.40194 * 120.36620 * 2 1 4 4 C 1.35355 * 119.94529 * 179.76690 * 3 2 1 5 5 N 1.35755 * 120.70348 * 0.50910 * 4 3 2 6 6 C 1.46504 * 119.62719 * 179.76415 * 5 4 3 7 7 C 1.50701 * 109.46916 * 269.72434 * 6 5 4 8 8 O 1.21288 * 119.99939 * 359.97438 * 7 6 5 9 9 N 1.34777 * 120.00159 * 179.97438 * 7 6 5 10 10 C 1.46500 * 120.00077 * 180.02562 * 9 7 6 11 11 H 1.09000 * 109.49851 * 325.06232 * 10 9 7 12 12 C 1.53036 * 109.50004 * 85.15868 * 10 9 7 13 13 C 1.53040 * 109.54192 * 181.31597 * 12 10 9 14 14 C 1.53197 * 109.31181 * 298.63935 * 13 12 10 15 15 N 1.46922 * 108.77483 * 54.62967 * 14 13 12 16 16 C 1.36941 * 120.62720 * 126.41404 * 15 14 13 17 17 H 1.07997 * 119.99701 * 208.63074 * 16 15 14 18 18 C 1.38816 * 120.00063 * 28.63538 * 16 15 14 19 19 N 1.31620 * 119.99831 * 14.71028 * 18 16 15 20 20 Si 1.86796 * 119.99949 * 194.71933 * 18 16 15 21 21 H 1.48503 * 109.47335 * 359.97438 * 20 18 16 22 22 H 1.48496 * 109.47263 * 119.99600 * 20 18 16 23 23 H 1.48509 * 109.46723 * 239.99837 * 20 18 16 24 24 C 1.46928 * 118.74238 * 306.39195 * 15 14 13 25 25 H 1.08992 * 109.58559 * 293.82075 * 24 15 14 26 26 C 1.52999 * 109.70199 * 173.46695 * 24 15 14 27 27 C 1.34660 * 120.74975 * 359.48286 * 5 4 3 28 28 O 1.22066 * 119.98567 * 180.28059 * 27 5 4 29 29 C 1.36401 * 120.36604 * 180.02562 * 2 1 3 30 30 H 1.09002 * 109.47471 * 269.98091 * 1 2 3 31 31 H 1.09000 * 109.47326 * 29.98498 * 1 2 3 32 32 H 1.08999 * 109.46919 * 149.98272 * 1 2 3 33 33 H 1.07998 * 120.02886 * 0.03766 * 3 2 1 34 34 H 1.07999 * 119.64595 * 180.27042 * 4 3 2 35 35 H 1.08997 * 109.46743 * 29.71768 * 6 5 4 36 36 H 1.08997 * 109.47038 * 149.72542 * 6 5 4 37 37 H 0.96994 * 119.99511 * 0.02562 * 9 7 6 38 38 H 1.09004 * 109.46349 * 301.34181 * 12 10 9 39 39 H 1.09007 * 109.45843 * 61.29438 * 12 10 9 40 40 H 1.08998 * 109.50002 * 178.68796 * 13 12 10 41 41 H 1.09000 * 109.49494 * 58.58532 * 13 12 10 42 42 H 1.09003 * 109.58562 * 294.84633 * 14 13 12 43 43 H 1.08995 * 109.70297 * 174.49075 * 14 13 12 44 44 H 0.97001 * 119.99575 * 179.97438 * 19 18 16 45 45 H 1.08999 * 109.47058 * 300.63789 * 26 24 15 46 46 H 1.08993 * 109.47446 * 60.64348 * 26 24 15 47 47 H 1.08999 * 109.46868 * 180.64325 * 26 24 15 48 48 H 1.07999 * 120.34985 * 0.02562 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2157 1.2096 0.0000 4 6 3.5692 1.1997 0.0048 5 7 4.2538 0.0274 -0.0008 6 6 5.7188 0.0442 -0.0007 7 6 6.2211 0.0499 -1.4215 8 8 5.4330 0.0403 -2.3434 9 7 7.5461 0.0656 -1.6677 10 6 8.0344 0.0716 -3.0489 11 1 7.3686 -0.5245 -3.6729 12 6 8.0730 1.5098 -3.5708 13 6 8.5518 1.5142 -5.0244 14 6 9.9691 0.9368 -5.0927 15 7 9.9704 -0.3896 -4.4609 16 6 10.4517 -1.4817 -5.1323 17 1 10.0623 -2.4650 -4.9134 18 6 11.4402 -1.3250 -6.0943 19 7 12.1178 -0.1988 -6.1641 20 14 11.8084 -2.7123 -7.2898 21 1 10.9145 -3.8630 -7.0032 22 1 11.5801 -2.2417 -8.6796 23 1 13.2237 -3.1352 -7.1364 24 6 9.4459 -0.5220 -3.0948 25 1 10.0917 0.0169 -2.4017 26 6 9.3936 -2.0002 -2.7034 27 6 3.6017 -1.1508 -0.0007 28 8 4.2312 -2.1965 -0.0006 29 6 2.1965 -1.1769 -0.0005 30 1 -0.3634 -0.0003 1.0277 31 1 -0.3634 0.8901 -0.5136 32 1 -0.3633 -0.8898 -0.5141 33 1 1.6822 2.1486 0.0006 34 1 4.1103 2.1343 0.0092 35 1 6.0717 0.9384 0.5130 36 1 6.0922 -0.8415 0.5132 37 1 8.1763 0.0728 -0.9304 38 1 7.0742 1.9429 -3.5162 39 1 8.7579 2.0991 -2.9611 40 1 8.5567 2.5364 -5.4027 41 1 7.8812 0.9047 -5.6301 42 1 10.6576 1.5948 -4.5623 43 1 10.2792 0.8461 -6.1336 44 1 12.8088 -0.0894 -6.8360 45 1 8.7514 -2.5382 -3.4006 46 1 10.3987 -2.4206 -2.7366 47 1 8.9934 -2.0947 -1.6939 48 1 1.6683 -2.1189 -0.0014 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000993887584.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:10:41 Heat of formation + Delta-G solvation = -41.081120 kcal Electronic energy + Delta-G solvation = -29231.917047 eV Core-core repulsion = 25286.826475 eV Total energy + Delta-G solvation = -3945.090572 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.50800 -40.91122 -39.22699 -38.08961 -36.28704 -35.88303 -34.30323 -33.47364 -31.74648 -30.91863 -30.24267 -28.28729 -27.42368 -26.80112 -24.64005 -23.98679 -22.62809 -22.35148 -21.59797 -21.08586 -18.75251 -18.54403 -18.49929 -18.15401 -17.23525 -17.00669 -16.60216 -16.37409 -16.21907 -15.62315 -15.53199 -15.17060 -15.06549 -15.05389 -14.71779 -14.58907 -14.30833 -14.14983 -13.60983 -13.40325 -13.32685 -13.28321 -12.99921 -12.86045 -12.84758 -12.73503 -12.55352 -12.45635 -12.39105 -12.02303 -11.86176 -11.78708 -11.65890 -11.28620 -11.14854 -11.06808 -10.56115 -10.54148 -10.07018 -8.97231 -8.67529 -7.87837 -5.33335 -0.10514 0.93410 1.42777 1.45432 1.47445 1.52017 1.55361 2.15163 2.50530 2.71662 3.27403 3.53494 3.65146 3.70940 3.76543 3.87393 3.92110 4.01720 4.11108 4.19595 4.20243 4.34469 4.35507 4.42088 4.49915 4.59658 4.72675 4.79859 4.83859 4.86256 4.89822 4.91315 5.02065 5.11825 5.12058 5.19413 5.24955 5.26859 5.39914 5.46480 5.50125 5.58844 5.67798 5.68206 5.77178 6.07247 6.39941 6.49429 6.98587 7.14448 7.18986 7.85049 8.34870 9.18689 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.022420 B = 0.002558 C = 0.002471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.600550 B =10945.090059 C =11326.948215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.033 3.967 3 C -0.232 4.232 4 C 0.141 3.859 5 N -0.483 5.483 6 C 0.074 3.926 7 C 0.498 3.502 8 O -0.579 6.579 9 N -0.700 5.700 10 C 0.147 3.853 11 H 0.046 0.954 12 C -0.104 4.104 13 C -0.131 4.131 14 C 0.174 3.826 15 N -0.602 5.602 16 C -0.252 4.252 17 H 0.067 0.933 18 C -0.048 4.048 19 N -0.931 5.931 20 Si 0.959 3.041 21 H -0.273 1.273 22 H -0.291 1.291 23 H -0.290 1.290 24 C 0.166 3.834 25 H 0.042 0.958 26 C -0.129 4.129 27 C 0.501 3.499 28 O -0.612 6.612 29 C -0.294 4.294 30 H 0.099 0.901 31 H 0.094 0.906 32 H 0.070 0.930 33 H 0.183 0.817 34 H 0.204 0.796 35 H 0.181 0.819 36 H 0.128 0.872 37 H 0.417 0.583 38 H 0.058 0.942 39 H 0.074 0.926 40 H 0.075 0.925 41 H 0.037 0.963 42 H 0.008 0.992 43 H 0.056 0.944 44 H 0.249 0.751 45 H 0.032 0.968 46 H 0.050 0.950 47 H 0.073 0.927 48 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.229 9.759 18.415 28.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.029 3.971 3 C -0.254 4.254 4 C 0.015 3.985 5 N -0.192 5.192 6 C -0.051 4.051 7 C 0.284 3.716 8 O -0.458 6.458 9 N -0.352 5.352 10 C 0.040 3.960 11 H 0.064 0.936 12 C -0.143 4.143 13 C -0.171 4.171 14 C 0.049 3.951 15 N -0.326 5.326 16 C -0.383 4.383 17 H 0.085 0.915 18 C -0.243 4.243 19 N -0.577 5.577 20 Si 0.788 3.212 21 H -0.197 1.197 22 H -0.218 1.218 23 H -0.217 1.217 24 C 0.059 3.941 25 H 0.060 0.940 26 C -0.187 4.187 27 C 0.307 3.693 28 O -0.500 6.500 29 C -0.316 4.316 30 H 0.117 0.883 31 H 0.113 0.887 32 H 0.089 0.911 33 H 0.200 0.800 34 H 0.221 0.779 35 H 0.198 0.802 36 H 0.146 0.854 37 H 0.255 0.745 38 H 0.076 0.924 39 H 0.093 0.907 40 H 0.094 0.906 41 H 0.056 0.944 42 H 0.026 0.974 43 H 0.074 0.926 44 H 0.059 0.941 45 H 0.051 0.949 46 H 0.069 0.931 47 H 0.092 0.908 48 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -19.217 9.107 17.663 27.644 hybrid contribution 0.968 -1.129 -1.008 1.797 sum -18.249 7.977 16.655 25.962 Atomic orbital electron populations 1.21037 0.88022 1.04471 1.04381 1.20645 0.98515 0.92119 0.85829 1.21063 0.92495 0.99749 1.12090 1.22721 0.94422 0.89704 0.91653 1.45076 1.07988 1.07451 1.58649 1.22040 0.79025 1.10063 0.93970 1.21300 0.82680 0.75501 0.92126 1.90740 1.56384 1.51093 1.47626 1.45790 1.06573 1.73917 1.08948 1.21288 0.95775 0.96830 0.82072 0.93566 1.21651 1.00685 0.95731 0.96240 1.22032 0.98153 1.00480 0.96404 1.20684 0.91846 0.84560 0.98060 1.44287 1.71478 1.05412 1.11386 1.19444 1.13631 0.88744 1.16441 0.91505 1.25709 0.96420 0.99249 1.02958 1.70147 1.24295 1.27059 1.36248 0.85328 0.77324 0.79528 0.79020 1.19732 1.21816 1.21661 1.20715 0.91039 0.95359 0.87003 0.94035 1.21741 1.01143 0.95628 1.00184 1.17525 0.90328 0.82744 0.78744 1.90909 1.70256 1.32320 1.56564 1.21890 0.91621 1.00793 1.17283 0.88255 0.88744 0.91112 0.79962 0.77892 0.80178 0.85384 0.74527 0.92365 0.90730 0.90625 0.94383 0.97360 0.92570 0.94149 0.94905 0.93081 0.90782 0.84441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.07 10.03 71.24 0.71 -0.36 16 2 C 0.03 0.52 5.89 -19.82 -0.12 0.41 16 3 C -0.23 -2.69 9.71 22.08 0.21 -2.48 16 4 C 0.14 1.82 10.28 83.42 0.86 2.68 16 5 N -0.48 -10.24 2.07 -655.06 -1.36 -11.60 16 6 C 0.07 1.28 5.82 85.63 0.50 1.77 16 7 C 0.50 13.37 7.86 87.66 0.69 14.06 16 8 O -0.58 -21.72 16.09 -3.05 -0.05 -21.77 16 9 N -0.70 -17.65 4.57 -442.17 -2.02 -19.67 16 10 C 0.15 5.12 2.00 45.07 0.09 5.21 16 11 H 0.05 2.01 7.58 -2.39 -0.02 1.99 16 12 C -0.10 -3.43 5.46 30.62 0.17 -3.26 16 13 C -0.13 -5.05 6.08 30.67 0.19 -4.86 16 14 C 0.17 8.28 5.29 86.36 0.46 8.74 16 15 N -0.60 -29.66 2.99 -675.24 -2.02 -31.68 16 16 C -0.25 -13.79 8.63 84.03 0.73 -13.07 16 17 H 0.07 3.64 6.20 -2.91 -0.02 3.62 16 18 C -0.05 -2.68 4.97 84.86 0.42 -2.26 16 19 N -0.93 -54.39 11.09 21.65 0.24 -54.15 16 20 Si 0.96 45.66 29.58 68.60 2.03 47.69 16 21 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 22 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 23 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 24 C 0.17 6.49 3.03 44.97 0.14 6.63 16 25 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 26 C -0.13 -4.87 7.84 71.98 0.56 -4.31 16 27 C 0.50 14.98 7.40 84.82 0.63 15.61 16 28 O -0.61 -23.94 16.64 -5.53 -0.09 -24.03 16 29 C -0.29 -7.17 9.65 22.40 0.22 -6.95 16 30 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.09 0.49 8.10 -2.39 -0.02 0.47 16 32 H 0.07 0.69 8.09 -2.39 -0.02 0.67 16 33 H 0.18 0.71 8.06 -2.91 -0.02 0.69 16 34 H 0.20 0.76 8.03 -2.91 -0.02 0.73 16 35 H 0.18 0.87 8.01 -2.39 -0.02 0.85 16 36 H 0.13 2.34 7.39 -2.39 -0.02 2.32 16 37 H 0.42 7.32 8.60 -92.71 -0.80 6.53 16 38 H 0.06 1.84 8.14 -2.38 -0.02 1.82 16 39 H 0.07 2.19 8.14 -2.38 -0.02 2.17 16 40 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 41 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 42 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 43 H 0.06 3.07 6.01 -2.39 -0.01 3.06 16 44 H 0.25 14.13 8.31 -92.71 -0.77 13.35 16 45 H 0.03 1.36 7.41 -2.39 -0.02 1.34 16 46 H 0.05 2.04 7.66 -2.39 -0.02 2.02 16 47 H 0.07 2.23 7.78 -2.39 -0.02 2.21 16 48 H 0.14 3.32 8.06 -2.91 -0.02 3.30 16 Total: -1.00 -85.35 386.57 3.34 -82.01 By element: Atomic # 1 Polarization: 15.47 SS G_CDS: 0.17 Total: 15.64 kcal Atomic # 6 Polarization: 11.12 SS G_CDS: 6.45 Total: 17.57 kcal Atomic # 7 Polarization: -111.95 SS G_CDS: -5.16 Total: -117.11 kcal Atomic # 8 Polarization: -45.66 SS G_CDS: -0.14 Total: -45.80 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 2.03 Total: 47.69 kcal Total: -85.35 3.34 -82.01 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993887584.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.925 kcal (2) G-P(sol) polarization free energy of solvation -85.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds