Wall clock time and date at job start Tue Mar 31 2020 17:47:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.37997 * 120.82398 * 2 1 4 4 C 1.39119 * 119.26841 * 179.97438 * 3 2 1 5 5 O 1.35498 * 119.52903 * 179.97438 * 4 3 2 6 6 N 1.32443 * 120.94767 * 359.97018 * 4 3 2 7 7 C 1.31633 * 121.80158 * 359.75377 * 6 4 3 8 8 C 1.50701 * 119.69127 * 180.28571 * 7 6 4 9 9 C 1.39565 * 120.62281 * 0.53669 * 7 6 4 10 10 C 1.47622 * 120.49928 * 179.72530 * 9 7 6 11 11 O 1.21579 * 120.00158 * 269.72608 * 10 9 7 12 12 N 1.34777 * 119.99863 * 89.72742 * 10 9 7 13 13 C 1.46494 * 119.99897 * 180.02562 * 12 10 9 14 14 H 1.09001 * 109.50071 * 34.99132 * 13 12 10 15 15 C 1.53037 * 109.52271 * 274.91305 * 13 12 10 16 16 C 1.53042 * 109.53804 * 301.39909 * 15 13 12 17 17 C 1.53188 * 109.31385 * 298.63138 * 16 15 13 18 18 N 1.46930 * 108.77449 * 54.63584 * 17 16 15 19 19 C 1.36930 * 120.63310 * 126.41168 * 18 17 16 20 20 H 1.07995 * 120.00527 * 221.18092 * 19 18 17 21 21 C 1.38820 * 120.00079 * 41.18456 * 19 18 17 22 22 N 1.31613 * 120.00208 * 214.88815 * 21 19 18 23 23 Si 1.86800 * 119.99673 * 34.88326 * 21 19 18 24 24 H 1.48502 * 109.47153 * 84.63003 * 23 21 19 25 25 H 1.48501 * 109.47097 * 204.62844 * 23 21 19 26 26 H 1.48501 * 109.47467 * 324.62996 * 23 21 19 27 27 C 1.46933 * 118.73643 * 306.39415 * 18 17 16 28 28 H 1.08999 * 109.69801 * 293.74552 * 27 18 17 29 29 C 1.53000 * 109.58407 * 173.39613 * 27 18 17 30 30 H 1.08999 * 109.47214 * 270.02714 * 1 2 3 31 31 H 1.08998 * 109.47066 * 30.02755 * 1 2 3 32 32 H 1.09007 * 109.47208 * 150.02202 * 1 2 3 33 33 H 1.08001 * 120.36451 * 359.97438 * 3 2 1 34 34 H 0.96708 * 113.99689 * 89.99610 * 5 4 3 35 35 H 1.08999 * 109.47249 * 270.24949 * 8 7 6 36 36 H 1.09005 * 109.46943 * 30.24797 * 8 7 6 37 37 H 1.08996 * 109.47118 * 150.24738 * 8 7 6 38 38 H 0.97007 * 119.99990 * 359.97438 * 12 10 9 39 39 H 1.09007 * 109.46079 * 61.41951 * 15 13 12 40 40 H 1.09001 * 109.46734 * 181.37908 * 15 13 12 41 41 H 1.09007 * 109.49714 * 178.68112 * 16 15 13 42 42 H 1.09001 * 109.52533 * 58.60266 * 16 15 13 43 43 H 1.09006 * 109.58896 * 294.85246 * 17 16 15 44 44 H 1.08993 * 109.58985 * 174.42180 * 17 16 15 45 45 H 0.97002 * 120.00329 * 179.97438 * 22 21 19 46 46 H 1.08996 * 109.46863 * 300.70780 * 29 27 18 47 47 H 1.09003 * 109.47211 * 60.70746 * 29 27 18 48 48 H 1.08996 * 109.46898 * 180.70606 * 29 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2141 1.1850 0.0000 4 6 3.6047 1.1473 0.0005 5 8 4.3043 2.3077 0.0000 6 7 4.2548 -0.0067 0.0016 7 6 3.6205 -1.1601 0.0071 8 6 4.4080 -2.4450 0.0146 9 6 2.2256 -1.2044 0.0007 10 6 1.5171 -2.4995 0.0007 11 8 1.2258 -3.0331 -1.0522 12 7 1.1931 -3.0903 1.1679 13 6 0.4905 -4.3758 1.1680 14 1 0.8336 -4.9780 0.3267 15 6 -1.0157 -4.1354 1.0433 16 6 -1.4927 -3.2625 2.2063 17 6 -1.2271 -3.9900 3.5280 18 7 0.1952 -4.3536 3.5901 19 6 0.9622 -3.9892 4.6643 20 1 1.9700 -3.6323 4.5120 21 6 0.4443 -4.0785 5.9492 22 7 0.7815 -3.1882 6.8580 23 14 -0.7312 -5.4623 6.3882 24 1 0.0454 -6.6717 6.7619 25 1 -1.5803 -5.0459 7.5332 26 1 -1.5932 -5.7694 5.2186 27 6 0.7787 -5.1160 2.4778 28 1 0.3342 -6.1105 2.4410 29 6 2.2908 -5.2371 2.6766 30 1 -0.3633 0.0005 1.0276 31 1 -0.3633 0.8897 -0.5142 32 1 -0.3634 -0.8902 -0.5135 33 1 1.6936 2.1314 -0.0004 34 1 4.5070 2.6451 0.8834 35 1 4.6027 -2.7579 -1.0112 36 1 5.3542 -2.2881 0.5325 37 1 3.8366 -3.2183 0.5281 38 1 1.4258 -2.6647 2.0080 39 1 -1.2261 -3.6306 0.1003 40 1 -1.5394 -5.0910 1.0680 41 1 -2.5612 -3.0722 2.1041 42 1 -0.9522 -2.3160 2.1970 43 1 -1.8373 -4.8919 3.5777 44 1 -1.4731 -3.3334 4.3624 45 1 0.4194 -3.2504 7.7557 46 1 2.7326 -4.2415 2.7183 47 1 2.4937 -5.7639 3.6091 48 1 2.7234 -5.7920 1.8442 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000994504588.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:47:49 Heat of formation + Delta-G solvation = -26.290630 kcal Electronic energy + Delta-G solvation = -30591.035870 eV Core-core repulsion = 26646.586661 eV Total energy + Delta-G solvation = -3944.449208 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.00717 -39.60964 -37.94971 -37.06898 -34.39285 -34.01036 -32.74351 -32.03608 -31.61185 -30.03614 -28.16420 -27.78652 -26.46686 -24.96878 -23.90062 -22.31345 -21.42884 -21.13452 -20.49331 -18.95360 -18.55611 -17.71365 -17.28177 -16.61527 -15.93303 -15.55425 -15.19111 -14.75253 -14.55516 -14.25539 -14.08808 -13.79285 -13.54801 -13.47293 -13.36885 -13.30297 -13.06198 -12.80999 -12.56998 -12.40375 -12.25889 -12.19135 -11.97910 -11.83142 -11.73484 -11.41801 -11.27472 -10.84514 -10.73572 -10.60190 -10.34233 -10.04792 -9.99315 -9.74636 -9.63810 -9.55202 -9.42438 -8.88362 -8.69117 -8.43324 -6.82178 -6.18548 -3.50307 0.69206 1.03874 2.71723 3.13657 3.33831 3.44951 3.49903 3.53641 3.57233 4.34214 4.42858 4.48831 4.79647 4.83472 4.91873 5.07302 5.13148 5.23364 5.34896 5.38029 5.40017 5.45932 5.47082 5.49702 5.56436 5.70949 5.77124 5.86050 5.94814 6.00777 6.04352 6.07612 6.09717 6.26343 6.29439 6.32854 6.36782 6.42739 6.52423 6.72147 6.81047 6.83658 6.93655 7.02402 7.28748 7.75504 7.84576 7.92684 8.29359 8.42620 8.89074 9.61394 10.09683 10.96413 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.013882 B = 0.004026 C = 0.003803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2016.581664 B = 6953.805889 C = 7360.169803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.014 3.986 3 C -0.197 4.197 4 C 0.329 3.671 5 O -0.483 6.483 6 N -0.507 5.507 7 C 0.195 3.805 8 C -0.111 4.111 9 C -0.186 4.186 10 C 0.569 3.431 11 O -0.543 6.543 12 N -0.691 5.691 13 C 0.133 3.867 14 H 0.080 0.920 15 C -0.122 4.122 16 C -0.134 4.134 17 C 0.143 3.857 18 N -0.594 5.594 19 C -0.281 4.281 20 H 0.077 0.923 21 C 0.055 3.945 22 N -0.877 5.877 23 Si 0.844 3.156 24 H -0.289 1.289 25 H -0.298 1.298 26 H -0.260 1.260 27 C 0.155 3.845 28 H 0.042 0.958 29 C -0.134 4.134 30 H 0.088 0.912 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.145 0.855 34 H 0.403 0.597 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.081 0.919 38 H 0.412 0.588 39 H 0.055 0.945 40 H 0.064 0.936 41 H 0.050 0.950 42 H 0.060 0.940 43 H 0.024 0.976 44 H 0.066 0.934 45 H 0.264 0.736 46 H 0.056 0.944 47 H 0.066 0.934 48 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.958 5.570 -11.519 12.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.006 3.994 3 C -0.218 4.218 4 C 0.150 3.850 5 O -0.290 6.290 6 N -0.227 5.227 7 C 0.056 3.944 8 C -0.169 4.169 9 C -0.191 4.191 10 C 0.353 3.647 11 O -0.421 6.421 12 N -0.342 5.342 13 C 0.027 3.973 14 H 0.098 0.902 15 C -0.160 4.160 16 C -0.174 4.174 17 C 0.017 3.983 18 N -0.319 5.319 19 C -0.408 4.408 20 H 0.094 0.906 21 C -0.149 4.149 22 N -0.515 5.515 23 Si 0.671 3.329 24 H -0.216 1.216 25 H -0.225 1.225 26 H -0.185 1.185 27 C 0.049 3.951 28 H 0.060 0.940 29 C -0.192 4.192 30 H 0.106 0.894 31 H 0.096 0.904 32 H 0.096 0.904 33 H 0.162 0.838 34 H 0.261 0.739 35 H 0.103 0.897 36 H 0.104 0.896 37 H 0.100 0.900 38 H 0.250 0.750 39 H 0.073 0.927 40 H 0.083 0.917 41 H 0.069 0.931 42 H 0.079 0.921 43 H 0.042 0.958 44 H 0.085 0.915 45 H 0.073 0.927 46 H 0.075 0.925 47 H 0.085 0.915 48 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 1.625 5.276 -12.647 13.799 hybrid contribution -1.390 -0.351 1.378 1.989 sum 0.235 4.924 -11.268 12.299 Atomic orbital electron populations 1.20954 0.89333 1.03959 1.03860 1.20194 0.96982 0.90865 0.91387 1.21842 0.93722 0.99317 1.06916 1.19211 0.87027 0.85016 0.93735 1.84706 1.76037 1.34130 1.34156 1.66965 1.41888 0.97835 1.16048 1.21024 0.89210 0.93109 0.91031 1.20864 1.00537 0.91674 1.03782 1.20765 0.94856 0.94672 1.08852 1.17844 0.78548 0.83791 0.84501 1.90780 1.55234 1.64706 1.31415 1.46089 1.57093 1.22673 1.08304 1.21554 0.91547 0.84315 0.99907 0.90161 1.21779 0.95586 1.00320 0.98358 1.22008 0.99217 0.99455 0.96691 1.21303 0.85505 0.96381 0.95068 1.44417 1.06628 1.61529 1.19332 1.18526 0.99774 1.39373 0.83153 0.90558 1.25574 0.96875 0.96707 0.95735 1.70062 1.45172 1.31344 1.04959 0.87385 0.81581 0.85803 0.78163 1.21567 1.22517 1.18498 1.20864 0.94174 0.93109 0.86986 0.94035 1.21760 0.94849 1.01690 1.00882 0.89353 0.90432 0.90376 0.83756 0.73892 0.89665 0.89634 0.89997 0.75043 0.92664 0.91742 0.93098 0.92120 0.95767 0.91535 0.92655 0.92492 0.91522 0.94087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.37 9.69 36.00 0.35 -1.02 16 2 C 0.01 0.18 5.95 -103.96 -0.62 -0.44 16 3 C -0.20 -2.31 9.72 -39.34 -0.38 -2.69 16 4 C 0.33 4.26 7.74 -16.96 -0.13 4.13 16 5 O -0.48 -5.18 13.55 -18.19 -0.25 -5.43 16 6 N -0.51 -7.43 10.28 -9.20 -0.09 -7.53 16 7 C 0.19 2.81 6.82 -82.18 -0.56 2.25 16 8 C -0.11 -1.39 9.78 36.01 0.35 -1.04 16 9 C -0.19 -2.71 5.65 -104.82 -0.59 -3.30 16 10 C 0.57 8.86 4.29 -12.43 -0.05 8.81 16 11 O -0.54 -9.89 16.77 5.30 0.09 -9.81 16 12 N -0.69 -10.58 3.46 -54.71 -0.19 -10.77 16 13 C 0.13 2.08 2.32 -67.82 -0.16 1.92 16 14 H 0.08 1.26 7.58 -51.93 -0.39 0.87 16 15 C -0.12 -1.84 5.58 -26.69 -0.15 -1.99 16 16 C -0.13 -2.15 5.93 -26.61 -0.16 -2.30 16 17 C 0.14 2.77 4.59 -3.71 -0.02 2.75 16 18 N -0.59 -12.15 2.13 -164.77 -0.35 -12.50 16 19 C -0.28 -6.80 8.43 -15.06 -0.13 -6.92 16 20 H 0.08 1.98 6.81 -52.49 -0.36 1.62 16 21 C 0.05 1.42 4.82 -17.43 -0.08 1.34 16 22 N -0.88 -24.53 13.97 55.49 0.78 -23.75 16 23 Si 0.84 20.10 27.40 -169.99 -4.66 15.45 16 24 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 25 H -0.30 -7.31 7.11 56.52 0.40 -6.91 16 26 H -0.26 -5.94 5.24 56.52 0.30 -5.64 16 27 C 0.16 2.71 3.20 -67.60 -0.22 2.49 16 28 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 29 C -0.13 -2.23 7.85 37.16 0.29 -1.94 16 30 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.08 0.68 8.10 -51.93 -0.42 0.26 16 32 H 0.08 0.97 7.19 -51.92 -0.37 0.60 16 33 H 0.14 1.30 8.06 -52.49 -0.42 0.88 16 34 H 0.40 2.32 9.06 45.56 0.41 2.73 16 35 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 36 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.08 1.04 7.06 -51.93 -0.37 0.67 16 38 H 0.41 6.79 7.75 -40.82 -0.32 6.48 16 39 H 0.05 0.84 8.14 -51.92 -0.42 0.41 16 40 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 41 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.06 0.99 7.53 -51.93 -0.39 0.60 16 43 H 0.02 0.48 6.71 -51.93 -0.35 0.14 16 44 H 0.07 1.42 7.02 -51.93 -0.36 1.06 16 45 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 46 H 0.06 0.96 6.35 -51.93 -0.33 0.63 16 47 H 0.07 1.22 7.71 -51.93 -0.40 0.82 16 48 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 379.75 15.07 5.72 5.72 Total: -1.00 -30.46 379.75 -7.90 -38.36 By element: Atomic # 1 Polarization: 14.92 SS G_CDS: -6.69 Total: 8.22 kcal Atomic # 6 Polarization: 4.29 SS G_CDS: -2.25 Total: 2.03 kcal Atomic # 7 Polarization: -54.69 SS G_CDS: 0.14 Total: -54.55 kcal Atomic # 8 Polarization: -15.08 SS G_CDS: -0.16 Total: -15.24 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -4.66 Total: 15.45 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -30.46 -7.90 -38.36 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000994504588.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.071 kcal (2) G-P(sol) polarization free energy of solvation -30.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds