Wall clock time and date at job start Tue Mar 31 2020 17:47:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.37997 * 120.82398 * 2 1 4 4 C 1.39119 * 119.26841 * 179.97438 * 3 2 1 5 5 O 1.35498 * 119.52903 * 179.97438 * 4 3 2 6 6 N 1.32443 * 120.94767 * 359.97018 * 4 3 2 7 7 C 1.31633 * 121.80158 * 359.75377 * 6 4 3 8 8 C 1.50701 * 119.69127 * 180.28571 * 7 6 4 9 9 C 1.39565 * 120.62281 * 0.53669 * 7 6 4 10 10 C 1.47622 * 120.49928 * 179.72530 * 9 7 6 11 11 O 1.21579 * 120.00158 * 269.72608 * 10 9 7 12 12 N 1.34777 * 119.99863 * 89.72742 * 10 9 7 13 13 C 1.46494 * 119.99897 * 180.02562 * 12 10 9 14 14 H 1.09001 * 109.50071 * 34.99132 * 13 12 10 15 15 C 1.53037 * 109.52271 * 274.91305 * 13 12 10 16 16 C 1.53042 * 109.53804 * 301.39909 * 15 13 12 17 17 C 1.53188 * 109.31385 * 298.63138 * 16 15 13 18 18 N 1.46930 * 108.77449 * 54.63584 * 17 16 15 19 19 C 1.36930 * 120.63310 * 126.41168 * 18 17 16 20 20 H 1.07995 * 120.00527 * 221.18092 * 19 18 17 21 21 C 1.38820 * 120.00079 * 41.18456 * 19 18 17 22 22 N 1.31613 * 120.00208 * 214.88815 * 21 19 18 23 23 Si 1.86800 * 119.99673 * 34.88326 * 21 19 18 24 24 H 1.48502 * 109.47153 * 84.63003 * 23 21 19 25 25 H 1.48501 * 109.47097 * 204.62844 * 23 21 19 26 26 H 1.48501 * 109.47467 * 324.62996 * 23 21 19 27 27 C 1.46933 * 118.73643 * 306.39415 * 18 17 16 28 28 H 1.08999 * 109.69801 * 293.74552 * 27 18 17 29 29 C 1.53000 * 109.58407 * 173.39613 * 27 18 17 30 30 H 1.08999 * 109.47214 * 270.02714 * 1 2 3 31 31 H 1.08998 * 109.47066 * 30.02755 * 1 2 3 32 32 H 1.09007 * 109.47208 * 150.02202 * 1 2 3 33 33 H 1.08001 * 120.36451 * 359.97438 * 3 2 1 34 34 H 0.96708 * 113.99689 * 89.99610 * 5 4 3 35 35 H 1.08999 * 109.47249 * 270.24949 * 8 7 6 36 36 H 1.09005 * 109.46943 * 30.24797 * 8 7 6 37 37 H 1.08996 * 109.47118 * 150.24738 * 8 7 6 38 38 H 0.97007 * 119.99990 * 359.97438 * 12 10 9 39 39 H 1.09007 * 109.46079 * 61.41951 * 15 13 12 40 40 H 1.09001 * 109.46734 * 181.37908 * 15 13 12 41 41 H 1.09007 * 109.49714 * 178.68112 * 16 15 13 42 42 H 1.09001 * 109.52533 * 58.60266 * 16 15 13 43 43 H 1.09006 * 109.58896 * 294.85246 * 17 16 15 44 44 H 1.08993 * 109.58985 * 174.42180 * 17 16 15 45 45 H 0.97002 * 120.00329 * 179.97438 * 22 21 19 46 46 H 1.08996 * 109.46863 * 300.70780 * 29 27 18 47 47 H 1.09003 * 109.47211 * 60.70746 * 29 27 18 48 48 H 1.08996 * 109.46898 * 180.70606 * 29 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2141 1.1850 0.0000 4 6 3.6047 1.1473 0.0005 5 8 4.3043 2.3077 0.0000 6 7 4.2548 -0.0067 0.0016 7 6 3.6205 -1.1601 0.0071 8 6 4.4080 -2.4450 0.0146 9 6 2.2256 -1.2044 0.0007 10 6 1.5171 -2.4995 0.0007 11 8 1.2258 -3.0331 -1.0522 12 7 1.1931 -3.0903 1.1679 13 6 0.4905 -4.3758 1.1680 14 1 0.8336 -4.9780 0.3267 15 6 -1.0157 -4.1354 1.0433 16 6 -1.4927 -3.2625 2.2063 17 6 -1.2271 -3.9900 3.5280 18 7 0.1952 -4.3536 3.5901 19 6 0.9622 -3.9892 4.6643 20 1 1.9700 -3.6323 4.5120 21 6 0.4443 -4.0785 5.9492 22 7 0.7815 -3.1882 6.8580 23 14 -0.7312 -5.4623 6.3882 24 1 0.0454 -6.6717 6.7619 25 1 -1.5803 -5.0459 7.5332 26 1 -1.5932 -5.7694 5.2186 27 6 0.7787 -5.1160 2.4778 28 1 0.3342 -6.1105 2.4410 29 6 2.2908 -5.2371 2.6766 30 1 -0.3633 0.0005 1.0276 31 1 -0.3633 0.8897 -0.5142 32 1 -0.3634 -0.8902 -0.5135 33 1 1.6936 2.1314 -0.0004 34 1 4.5070 2.6451 0.8834 35 1 4.6027 -2.7579 -1.0112 36 1 5.3542 -2.2881 0.5325 37 1 3.8366 -3.2183 0.5281 38 1 1.4258 -2.6647 2.0080 39 1 -1.2261 -3.6306 0.1003 40 1 -1.5394 -5.0910 1.0680 41 1 -2.5612 -3.0722 2.1041 42 1 -0.9522 -2.3160 2.1970 43 1 -1.8373 -4.8919 3.5777 44 1 -1.4731 -3.3334 4.3624 45 1 0.4194 -3.2504 7.7557 46 1 2.7326 -4.2415 2.7183 47 1 2.4937 -5.7639 3.6091 48 1 2.7234 -5.7920 1.8442 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000994504588.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:47:48 Heat of formation + Delta-G solvation = -48.224688 kcal Electronic energy + Delta-G solvation = -30591.987002 eV Core-core repulsion = 26646.586661 eV Total energy + Delta-G solvation = -3945.400340 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.06822 -40.83229 -39.25122 -38.07982 -35.56367 -35.35948 -34.20766 -33.47270 -32.92294 -31.47580 -29.08067 -28.83381 -27.87461 -26.63866 -25.02001 -23.79327 -22.44543 -22.39840 -21.86292 -20.37223 -19.47331 -18.89662 -18.37960 -18.24172 -17.13467 -16.89509 -16.67424 -15.98248 -15.94634 -15.67915 -15.21017 -15.12563 -14.82227 -14.67479 -14.54033 -14.30944 -14.28163 -14.16037 -13.88456 -13.83962 -13.44010 -13.32973 -13.14030 -12.93377 -12.83267 -12.73177 -12.62145 -12.60991 -12.31280 -12.13676 -11.89011 -11.53275 -11.44277 -11.19829 -11.08935 -10.62170 -10.50871 -10.41920 -9.96002 -9.88298 -8.57418 -8.19578 -5.45088 -0.30564 0.05734 1.41065 1.50198 1.50895 1.56316 2.11133 2.42836 2.52547 2.61270 3.02707 3.39581 3.42322 3.47552 3.67555 3.96640 4.01082 4.07858 4.18430 4.20052 4.28916 4.35603 4.41125 4.53028 4.56278 4.59370 4.63202 4.67002 4.71408 4.83797 4.93999 4.96107 4.97801 5.00453 5.08067 5.10972 5.14114 5.17608 5.29778 5.34502 5.41190 5.47909 5.53254 5.66794 5.99779 6.33239 6.53898 6.56790 6.79710 7.07310 7.17786 7.72124 8.22439 8.99624 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.013882 B = 0.004026 C = 0.003803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2016.581664 B = 6953.805889 C = 7360.169803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.008 3.992 3 C -0.191 4.191 4 C 0.325 3.675 5 O -0.486 6.486 6 N -0.530 5.530 7 C 0.183 3.817 8 C -0.109 4.109 9 C -0.208 4.208 10 C 0.581 3.419 11 O -0.570 6.570 12 N -0.686 5.686 13 C 0.138 3.862 14 H 0.087 0.913 15 C -0.116 4.116 16 C -0.123 4.123 17 C 0.141 3.859 18 N -0.602 5.602 19 C -0.249 4.249 20 H 0.054 0.946 21 C 0.005 3.995 22 N -0.925 5.925 23 Si 0.893 3.107 24 H -0.299 1.299 25 H -0.309 1.309 26 H -0.242 1.242 27 C 0.153 3.847 28 H 0.051 0.949 29 C -0.129 4.129 30 H 0.091 0.909 31 H 0.103 0.897 32 H 0.062 0.938 33 H 0.175 0.825 34 H 0.424 0.576 35 H 0.091 0.909 36 H 0.092 0.908 37 H 0.076 0.924 38 H 0.407 0.593 39 H 0.060 0.940 40 H 0.076 0.924 41 H 0.073 0.927 42 H 0.055 0.945 43 H 0.026 0.974 44 H 0.042 0.958 45 H 0.259 0.741 46 H 0.048 0.952 47 H 0.045 0.955 48 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.010 5.896 -13.310 14.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.000 4.000 3 C -0.212 4.212 4 C 0.146 3.854 5 O -0.297 6.297 6 N -0.251 5.251 7 C 0.044 3.956 8 C -0.166 4.166 9 C -0.214 4.214 10 C 0.367 3.633 11 O -0.450 6.450 12 N -0.336 5.336 13 C 0.032 3.968 14 H 0.105 0.895 15 C -0.155 4.155 16 C -0.162 4.162 17 C 0.016 3.984 18 N -0.327 5.327 19 C -0.378 4.378 20 H 0.072 0.928 21 C -0.194 4.194 22 N -0.567 5.567 23 Si 0.721 3.279 24 H -0.227 1.227 25 H -0.237 1.237 26 H -0.166 1.166 27 C 0.048 3.952 28 H 0.069 0.931 29 C -0.186 4.186 30 H 0.110 0.890 31 H 0.122 0.878 32 H 0.081 0.919 33 H 0.193 0.807 34 H 0.286 0.714 35 H 0.109 0.891 36 H 0.111 0.889 37 H 0.095 0.905 38 H 0.243 0.757 39 H 0.079 0.921 40 H 0.095 0.905 41 H 0.092 0.908 42 H 0.073 0.927 43 H 0.044 0.956 44 H 0.061 0.939 45 H 0.069 0.931 46 H 0.067 0.933 47 H 0.064 0.936 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 0.642 5.589 -14.459 15.515 hybrid contribution -1.005 -0.370 1.859 2.145 sum -0.363 5.219 -12.601 13.644 Atomic orbital electron populations 1.20970 0.88006 1.04510 1.04169 1.20495 0.98014 0.90696 0.90759 1.22111 0.93278 1.00147 1.05635 1.19487 0.87787 0.85132 0.92949 1.84661 1.75829 1.33138 1.36083 1.66985 1.42567 0.98431 1.17132 1.21234 0.89449 0.93661 0.91217 1.20870 1.00612 0.90983 1.04159 1.20782 0.95106 0.94747 1.10742 1.17871 0.77790 0.83831 0.83836 1.90760 1.56452 1.65569 1.32202 1.46041 1.56974 1.22505 1.08040 1.21465 0.92255 0.84321 0.98710 0.89529 1.21743 0.94914 1.00800 0.98008 1.21866 1.00677 0.98780 0.94866 1.21297 0.84573 0.96329 0.96216 1.44500 1.06928 1.62284 1.18972 1.18439 0.98884 1.36560 0.83934 0.92800 1.25995 0.98972 0.98335 0.96097 1.70146 1.47973 1.33285 1.05278 0.86586 0.80084 0.83175 0.78065 1.22715 1.23716 1.16583 1.21005 0.94390 0.93303 0.86511 0.93148 1.21696 0.94590 1.01376 1.00963 0.89028 0.87796 0.91883 0.80722 0.71422 0.89089 0.88916 0.90500 0.75669 0.92131 0.90501 0.90839 0.92656 0.95565 0.93910 0.93145 0.93294 0.93559 0.91337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.38 9.69 71.23 0.69 -1.69 16 2 C 0.01 0.20 5.95 -19.43 -0.12 0.08 16 3 C -0.19 -4.04 9.72 22.42 0.22 -3.82 16 4 C 0.32 7.89 7.74 84.81 0.66 8.54 16 5 O -0.49 -9.46 13.55 -87.99 -1.19 -10.65 16 6 N -0.53 -15.10 10.28 -295.89 -3.04 -18.14 16 7 C 0.18 5.18 6.82 42.91 0.29 5.47 16 8 C -0.11 -2.68 9.78 71.24 0.70 -1.98 16 9 C -0.21 -5.90 5.65 -19.99 -0.11 -6.01 16 10 C 0.58 17.50 4.29 86.72 0.37 17.88 16 11 O -0.57 -20.08 16.77 -3.96 -0.07 -20.14 16 12 N -0.69 -20.22 3.46 -445.27 -1.54 -21.76 16 13 C 0.14 4.04 2.32 45.07 0.10 4.15 16 14 H 0.09 2.50 7.58 -2.39 -0.02 2.49 16 15 C -0.12 -3.18 5.58 30.62 0.17 -3.01 16 16 C -0.12 -3.62 5.93 30.67 0.18 -3.44 16 17 C 0.14 5.23 4.59 86.36 0.40 5.62 16 18 N -0.60 -24.00 2.13 -675.22 -1.44 -25.43 16 19 C -0.25 -12.12 8.43 84.04 0.71 -11.41 16 20 H 0.05 2.86 6.81 -2.91 -0.02 2.84 16 21 C 0.01 0.27 4.82 84.86 0.41 0.68 16 22 N -0.92 -53.13 13.97 21.65 0.30 -52.82 16 23 Si 0.89 41.84 27.40 68.60 1.88 43.72 16 24 H -0.30 -14.42 7.11 99.48 0.71 -13.71 16 25 H -0.31 -15.00 7.11 99.48 0.71 -14.29 16 26 H -0.24 -10.45 5.24 99.48 0.52 -9.93 16 27 C 0.15 5.09 3.20 44.97 0.14 5.23 16 28 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 29 C -0.13 -4.15 7.85 71.98 0.56 -3.58 16 30 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 31 H 0.10 1.48 8.10 -2.39 -0.02 1.46 16 32 H 0.06 1.46 7.19 -2.38 -0.02 1.44 16 33 H 0.18 2.52 8.06 -2.91 -0.02 2.50 16 34 H 0.42 3.99 9.06 -74.05 -0.67 3.32 16 35 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 36 H 0.09 2.08 8.14 -2.38 -0.02 2.06 16 37 H 0.08 1.92 7.06 -2.39 -0.02 1.91 16 38 H 0.41 13.18 7.75 -92.70 -0.72 12.47 16 39 H 0.06 1.65 8.14 -2.38 -0.02 1.63 16 40 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 41 H 0.07 1.87 8.14 -2.38 -0.02 1.85 16 42 H 0.05 1.70 7.53 -2.39 -0.02 1.68 16 43 H 0.03 0.98 6.71 -2.38 -0.02 0.96 16 44 H 0.04 1.79 7.02 -2.39 -0.02 1.77 16 45 H 0.26 14.44 8.31 -92.71 -0.77 13.67 16 46 H 0.05 1.64 6.35 -2.39 -0.02 1.63 16 47 H 0.05 1.67 7.71 -2.39 -0.02 1.65 16 48 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 Total: -1.00 -65.68 379.75 -0.30 -65.98 By element: Atomic # 1 Polarization: 27.12 SS G_CDS: -0.58 Total: 26.54 kcal Atomic # 6 Polarization: 7.33 SS G_CDS: 5.38 Total: 12.71 kcal Atomic # 7 Polarization: -112.44 SS G_CDS: -5.72 Total: -118.16 kcal Atomic # 8 Polarization: -29.53 SS G_CDS: -1.26 Total: -30.79 kcal Atomic # 14 Polarization: 41.84 SS G_CDS: 1.88 Total: 43.72 kcal Total: -65.68 -0.30 -65.98 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000994504588.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.758 kcal (2) G-P(sol) polarization free energy of solvation -65.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds