Wall clock time and date at job start Tue Mar 31 2020 17:47:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38002 * 120.81744 * 2 1 4 4 C 1.39127 * 119.26517 * 179.97438 * 3 2 1 5 5 O 1.35492 * 119.52609 * 180.02562 * 4 3 2 6 6 N 1.32438 * 120.94810 * 359.97438 * 4 3 2 7 7 C 1.31642 * 121.79990 * 359.74828 * 6 4 3 8 8 C 1.50697 * 119.68653 * 180.28792 * 7 6 4 9 9 C 1.39563 * 120.62506 * 0.53865 * 7 6 4 10 10 C 1.47612 * 120.49669 * 179.72698 * 9 7 6 11 11 O 1.21584 * 119.99666 * 269.71862 * 10 9 7 12 12 N 1.34773 * 120.00234 * 89.72487 * 10 9 7 13 13 C 1.46498 * 120.00329 * 180.02562 * 12 10 9 14 14 H 1.08999 * 109.49586 * 325.06024 * 13 12 10 15 15 C 1.53036 * 109.49822 * 85.15823 * 13 12 10 16 16 C 1.53045 * 109.53891 * 181.31791 * 15 13 12 17 17 C 1.53196 * 109.31092 * 298.63935 * 16 15 13 18 18 N 1.46924 * 108.77816 * 54.63265 * 17 16 15 19 19 C 1.36935 * 120.62827 * 126.41621 * 18 17 16 20 20 H 1.08002 * 119.99539 * 209.00733 * 19 18 17 21 21 C 1.38814 * 120.00426 * 29.00982 * 19 18 17 22 22 N 1.31612 * 119.99931 * 15.02171 * 21 19 18 23 23 Si 1.86801 * 120.00047 * 195.02366 * 21 19 18 24 24 H 1.48501 * 109.47104 * 0.02562 * 23 21 19 25 25 H 1.48500 * 109.47119 * 119.99713 * 23 21 19 26 26 H 1.48497 * 109.46922 * 239.99906 * 23 21 19 27 27 C 1.46923 * 118.73662 * 306.39228 * 18 17 16 28 28 H 1.09007 * 109.58375 * 293.67475 * 27 18 17 29 29 C 1.53002 * 109.58650 * 173.39874 * 27 18 17 30 30 H 1.09007 * 109.46941 * 270.01147 * 1 2 3 31 31 H 1.08993 * 109.47423 * 30.01811 * 1 2 3 32 32 H 1.09004 * 109.46761 * 150.02304 * 1 2 3 33 33 H 1.07999 * 120.36623 * 0.02562 * 3 2 1 34 34 H 0.96705 * 114.00615 * 90.00116 * 5 4 3 35 35 H 1.09003 * 109.47290 * 270.24922 * 8 7 6 36 36 H 1.09005 * 109.47397 * 30.24995 * 8 7 6 37 37 H 1.09003 * 109.47139 * 150.24665 * 8 7 6 38 38 H 0.97009 * 120.00193 * 359.97438 * 12 10 9 39 39 H 1.08998 * 109.45801 * 61.30206 * 15 13 12 40 40 H 1.08999 * 109.45969 * 301.33670 * 15 13 12 41 41 H 1.08995 * 109.50047 * 178.68742 * 16 15 13 42 42 H 1.09006 * 109.49321 * 58.58369 * 16 15 13 43 43 H 1.09007 * 109.58386 * 174.42345 * 17 16 15 44 44 H 1.09004 * 109.58479 * 294.84261 * 17 16 15 45 45 H 0.97000 * 120.00190 * 179.97438 * 22 21 19 46 46 H 1.09001 * 109.47119 * 59.99766 * 29 27 18 47 47 H 1.08997 * 109.47533 * 179.97438 * 29 27 18 48 48 H 1.09002 * 109.46826 * 300.00159 * 29 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2140 1.1852 0.0000 4 6 3.6047 1.1475 0.0005 5 8 4.3042 2.3079 0.0011 6 7 4.2548 -0.0064 0.0016 7 6 3.6205 -1.1599 0.0070 8 6 4.4081 -2.4447 0.0145 9 6 2.2256 -1.2043 0.0007 10 6 1.5173 -2.4994 0.0008 11 8 1.2260 -3.0330 -1.0522 12 7 1.1935 -3.0903 1.1679 13 6 0.4910 -4.3759 1.1681 14 1 -0.1993 -4.4133 0.3254 15 6 1.5076 -5.5134 1.0474 16 6 0.7726 -6.8554 1.0143 17 6 -0.0058 -7.0390 2.3210 18 7 -0.8817 -5.8759 2.5171 19 6 -2.2235 -6.0418 2.7343 20 1 -2.9195 -5.2768 2.4230 21 6 -2.6893 -7.1930 3.3544 22 7 -1.8513 -7.9808 3.9942 23 14 -4.5054 -7.6242 3.2809 24 1 -5.2300 -6.5845 2.5068 25 1 -4.6748 -8.9421 2.6179 26 1 -5.0549 -7.6889 4.6589 27 6 -0.2905 -4.5315 2.4764 28 1 0.3825 -4.4025 3.3241 29 6 -1.4009 -3.4807 2.5386 30 1 -0.3633 0.0002 1.0277 31 1 -0.3634 0.8897 -0.5141 32 1 -0.3633 -0.8902 -0.5135 33 1 1.6934 2.1314 0.0004 34 1 4.5069 2.6447 0.8846 35 1 4.6028 -2.7575 -1.0113 36 1 5.3544 -2.2878 0.5323 37 1 3.8369 -3.2181 0.5281 38 1 1.4262 -2.6647 2.0081 39 1 2.1821 -5.4899 1.9033 40 1 2.0819 -5.3913 0.1291 41 1 1.4956 -7.6637 0.9050 42 1 0.0796 -6.8700 0.1730 43 1 -0.6090 -7.9451 2.2627 44 1 0.6924 -7.1154 3.1546 45 1 -2.1767 -8.7851 4.4279 46 1 -1.9636 -3.6012 3.4644 47 1 -0.9603 -2.4842 2.5088 48 1 -2.0699 -3.6083 1.6876 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000994504591.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:47:53 Heat of formation + Delta-G solvation = -29.277126 kcal Electronic energy + Delta-G solvation = -29720.718746 eV Core-core repulsion = 25776.140034 eV Total energy + Delta-G solvation = -3944.578712 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.16502 -39.58088 -37.89802 -37.19634 -34.56574 -34.36237 -32.68431 -32.12622 -31.54473 -29.34227 -28.32267 -27.89885 -26.23784 -25.08001 -24.00924 -22.15422 -21.58559 -20.75373 -20.47305 -19.53253 -18.69922 -17.67815 -17.42438 -16.53164 -16.08980 -15.76600 -15.04540 -14.69153 -14.53468 -14.31525 -13.96959 -13.79399 -13.74279 -13.58804 -13.43640 -13.33489 -13.03574 -12.77355 -12.57997 -12.54740 -12.35648 -12.15313 -11.90226 -11.76701 -11.59609 -11.17411 -10.96530 -10.80694 -10.60976 -10.36656 -10.26196 -10.12739 -10.06007 -9.84963 -9.78120 -9.58882 -9.39380 -9.06918 -8.76572 -8.49972 -6.72227 -5.83381 -3.28011 0.50205 0.84925 2.58385 2.96344 3.32126 3.34279 3.36498 3.42863 3.44335 4.16719 4.25378 4.44302 4.60997 4.74496 4.91313 5.06415 5.19812 5.23790 5.28922 5.30445 5.34590 5.40619 5.46690 5.54384 5.62777 5.69704 5.73551 5.85289 5.89795 5.91645 6.02304 6.14477 6.15876 6.26946 6.33811 6.47239 6.56298 6.65110 6.70888 6.79937 6.92277 7.00372 7.11286 7.36682 7.56364 7.62024 7.64716 7.77725 8.25832 8.40692 9.15970 9.78563 10.34359 11.25138 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.021722 B = 0.002933 C = 0.002722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.677715 B = 9542.790085 C =10282.351246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.013 3.987 3 C -0.197 4.197 4 C 0.328 3.672 5 O -0.481 6.481 6 N -0.508 5.508 7 C 0.194 3.806 8 C -0.112 4.112 9 C -0.188 4.188 10 C 0.570 3.430 11 O -0.529 6.529 12 N -0.709 5.709 13 C 0.130 3.870 14 H 0.088 0.912 15 C -0.118 4.118 16 C -0.140 4.140 17 C 0.169 3.831 18 N -0.582 5.582 19 C -0.252 4.252 20 H 0.071 0.929 21 C 0.004 3.996 22 N -0.902 5.902 23 Si 0.901 3.099 24 H -0.277 1.277 25 H -0.289 1.289 26 H -0.291 1.291 27 C 0.168 3.832 28 H 0.028 0.972 29 C -0.137 4.137 30 H 0.087 0.913 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.146 0.854 34 H 0.402 0.598 35 H 0.087 0.913 36 H 0.084 0.916 37 H 0.081 0.919 38 H 0.397 0.603 39 H 0.055 0.945 40 H 0.050 0.950 41 H 0.052 0.948 42 H 0.056 0.944 43 H 0.090 0.910 44 H 0.019 0.981 45 H 0.253 0.747 46 H 0.064 0.936 47 H 0.037 0.963 48 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.768 16.428 -4.014 19.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.005 3.995 3 C -0.218 4.218 4 C 0.150 3.850 5 O -0.289 6.289 6 N -0.228 5.228 7 C 0.056 3.944 8 C -0.170 4.170 9 C -0.194 4.194 10 C 0.354 3.646 11 O -0.405 6.405 12 N -0.358 5.358 13 C 0.024 3.976 14 H 0.106 0.894 15 C -0.156 4.156 16 C -0.180 4.180 17 C 0.043 3.957 18 N -0.305 5.305 19 C -0.381 4.381 20 H 0.089 0.911 21 C -0.195 4.195 22 N -0.546 5.546 23 Si 0.731 3.269 24 H -0.202 1.202 25 H -0.215 1.215 26 H -0.218 1.218 27 C 0.060 3.940 28 H 0.045 0.955 29 C -0.194 4.194 30 H 0.105 0.895 31 H 0.097 0.903 32 H 0.099 0.901 33 H 0.163 0.837 34 H 0.260 0.740 35 H 0.106 0.894 36 H 0.103 0.897 37 H 0.100 0.900 38 H 0.231 0.769 39 H 0.073 0.927 40 H 0.069 0.931 41 H 0.071 0.929 42 H 0.075 0.925 43 H 0.108 0.892 44 H 0.037 0.963 45 H 0.063 0.937 46 H 0.083 0.917 47 H 0.056 0.944 48 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 10.342 15.894 -5.269 19.681 hybrid contribution -1.449 0.148 0.862 1.693 sum 8.893 16.042 -4.407 18.864 Atomic orbital electron populations 1.20972 0.89138 1.04377 1.03800 1.20237 0.97071 0.90812 0.91359 1.21871 0.93699 0.99364 1.06871 1.19233 0.87040 0.85019 0.93702 1.84729 1.76023 1.34083 1.34048 1.66984 1.41870 0.97833 1.16087 1.21048 0.89203 0.93115 0.91084 1.20877 1.00389 0.91570 1.04128 1.20815 0.94856 0.94691 1.09012 1.17821 0.78662 0.83610 0.84556 1.90833 1.53770 1.64699 1.31196 1.46219 1.58623 1.23318 1.07678 1.21870 0.93604 0.80205 1.01893 0.89425 1.21774 0.97707 0.95604 1.00545 1.22186 0.98973 0.94929 1.01907 1.20862 0.92013 0.92148 0.90647 1.44046 1.05121 0.98484 1.82858 1.19207 0.82264 1.04599 1.32061 0.91123 1.25072 0.97537 0.99600 0.97243 1.70021 1.33494 1.15298 1.35801 0.86240 0.85126 0.78225 0.77276 1.20228 1.21550 1.21751 1.20553 0.93445 0.88002 0.92014 0.95459 1.21827 0.98866 0.95911 1.02829 0.89460 0.90251 0.90109 0.83666 0.73962 0.89443 0.89670 0.90029 0.76899 0.92651 0.93100 0.92934 0.92495 0.89213 0.96298 0.93668 0.91708 0.94390 0.92635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.17 9.69 36.01 0.35 -0.82 16 2 C 0.01 0.14 5.95 -103.96 -0.62 -0.48 16 3 C -0.20 -1.87 9.73 -39.34 -0.38 -2.25 16 4 C 0.33 3.54 7.74 -16.96 -0.13 3.41 16 5 O -0.48 -4.21 13.55 -18.17 -0.25 -4.45 16 6 N -0.51 -6.34 10.29 -9.20 -0.09 -6.44 16 7 C 0.19 2.39 6.82 -82.18 -0.56 1.83 16 8 C -0.11 -1.20 9.78 36.00 0.35 -0.85 16 9 C -0.19 -2.37 5.65 -104.83 -0.59 -2.96 16 10 C 0.57 8.25 4.29 -12.44 -0.05 8.20 16 11 O -0.53 -9.72 16.77 5.29 0.09 -9.63 16 12 N -0.71 -9.62 4.58 -54.71 -0.25 -9.87 16 13 C 0.13 2.19 2.00 -67.81 -0.14 2.05 16 14 H 0.09 1.72 7.58 -51.93 -0.39 1.33 16 15 C -0.12 -1.99 5.46 -26.69 -0.15 -2.13 16 16 C -0.14 -2.65 6.08 -26.61 -0.16 -2.81 16 17 C 0.17 3.85 5.29 -3.71 -0.02 3.83 16 18 N -0.58 -13.60 2.99 -164.77 -0.49 -14.10 16 19 C -0.25 -6.48 8.60 -15.06 -0.13 -6.61 16 20 H 0.07 1.78 6.21 -52.49 -0.33 1.46 16 21 C 0.00 0.11 4.96 -17.43 -0.09 0.02 16 22 N -0.90 -25.19 11.14 55.49 0.62 -24.57 16 23 Si 0.90 21.07 29.58 -169.99 -5.03 16.04 16 24 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 25 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 26 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 27 C 0.17 3.17 3.03 -67.60 -0.21 2.97 16 28 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 29 C -0.14 -2.36 7.83 37.16 0.29 -2.07 16 30 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.08 0.58 8.10 -51.93 -0.42 0.16 16 32 H 0.08 0.93 7.19 -51.93 -0.37 0.55 16 33 H 0.15 1.00 8.06 -52.49 -0.42 0.58 16 34 H 0.40 1.38 9.06 45.56 0.41 1.79 16 35 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.08 0.89 7.06 -51.93 -0.37 0.52 16 38 H 0.40 4.54 8.59 -40.82 -0.35 4.19 16 39 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 42 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 43 H 0.09 2.32 6.06 -51.93 -0.31 2.00 16 44 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.25 6.87 8.31 -40.82 -0.34 6.53 16 46 H 0.06 1.21 7.62 -51.93 -0.40 0.82 16 47 H 0.04 0.52 7.80 -51.93 -0.41 0.12 16 48 H 0.05 1.01 7.45 -51.93 -0.39 0.63 16 LS Contribution 385.45 15.07 5.81 5.81 Total: -1.00 -32.20 385.45 -8.51 -40.71 By element: Atomic # 1 Polarization: 11.87 SS G_CDS: -6.68 Total: 5.19 kcal Atomic # 6 Polarization: 3.55 SS G_CDS: -2.23 Total: 1.33 kcal Atomic # 7 Polarization: -54.76 SS G_CDS: -0.22 Total: -54.98 kcal Atomic # 8 Polarization: -13.93 SS G_CDS: -0.16 Total: -14.09 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.03 Total: 16.04 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -32.20 -8.51 -40.71 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000994504591.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.428 kcal (2) G-P(sol) polarization free energy of solvation -32.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds