Wall clock time and date at job start Tue Mar 31 2020 17:47:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38002 * 120.81744 * 2 1 4 4 C 1.39127 * 119.26517 * 179.97438 * 3 2 1 5 5 O 1.35492 * 119.52609 * 180.02562 * 4 3 2 6 6 N 1.32438 * 120.94810 * 359.97438 * 4 3 2 7 7 C 1.31642 * 121.79990 * 359.74828 * 6 4 3 8 8 C 1.50697 * 119.68653 * 180.28792 * 7 6 4 9 9 C 1.39563 * 120.62506 * 0.53865 * 7 6 4 10 10 C 1.47612 * 120.49669 * 179.72698 * 9 7 6 11 11 O 1.21584 * 119.99666 * 269.71862 * 10 9 7 12 12 N 1.34773 * 120.00234 * 89.72487 * 10 9 7 13 13 C 1.46498 * 120.00329 * 180.02562 * 12 10 9 14 14 H 1.08999 * 109.49586 * 325.06024 * 13 12 10 15 15 C 1.53036 * 109.49822 * 85.15823 * 13 12 10 16 16 C 1.53045 * 109.53891 * 181.31791 * 15 13 12 17 17 C 1.53196 * 109.31092 * 298.63935 * 16 15 13 18 18 N 1.46924 * 108.77816 * 54.63265 * 17 16 15 19 19 C 1.36935 * 120.62827 * 126.41621 * 18 17 16 20 20 H 1.08002 * 119.99539 * 209.00733 * 19 18 17 21 21 C 1.38814 * 120.00426 * 29.00982 * 19 18 17 22 22 N 1.31612 * 119.99931 * 15.02171 * 21 19 18 23 23 Si 1.86801 * 120.00047 * 195.02366 * 21 19 18 24 24 H 1.48501 * 109.47104 * 0.02562 * 23 21 19 25 25 H 1.48500 * 109.47119 * 119.99713 * 23 21 19 26 26 H 1.48497 * 109.46922 * 239.99906 * 23 21 19 27 27 C 1.46923 * 118.73662 * 306.39228 * 18 17 16 28 28 H 1.09007 * 109.58375 * 293.67475 * 27 18 17 29 29 C 1.53002 * 109.58650 * 173.39874 * 27 18 17 30 30 H 1.09007 * 109.46941 * 270.01147 * 1 2 3 31 31 H 1.08993 * 109.47423 * 30.01811 * 1 2 3 32 32 H 1.09004 * 109.46761 * 150.02304 * 1 2 3 33 33 H 1.07999 * 120.36623 * 0.02562 * 3 2 1 34 34 H 0.96705 * 114.00615 * 90.00116 * 5 4 3 35 35 H 1.09003 * 109.47290 * 270.24922 * 8 7 6 36 36 H 1.09005 * 109.47397 * 30.24995 * 8 7 6 37 37 H 1.09003 * 109.47139 * 150.24665 * 8 7 6 38 38 H 0.97009 * 120.00193 * 359.97438 * 12 10 9 39 39 H 1.08998 * 109.45801 * 61.30206 * 15 13 12 40 40 H 1.08999 * 109.45969 * 301.33670 * 15 13 12 41 41 H 1.08995 * 109.50047 * 178.68742 * 16 15 13 42 42 H 1.09006 * 109.49321 * 58.58369 * 16 15 13 43 43 H 1.09007 * 109.58386 * 174.42345 * 17 16 15 44 44 H 1.09004 * 109.58479 * 294.84261 * 17 16 15 45 45 H 0.97000 * 120.00190 * 179.97438 * 22 21 19 46 46 H 1.09001 * 109.47119 * 59.99766 * 29 27 18 47 47 H 1.08997 * 109.47533 * 179.97438 * 29 27 18 48 48 H 1.09002 * 109.46826 * 300.00159 * 29 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2140 1.1852 0.0000 4 6 3.6047 1.1475 0.0005 5 8 4.3042 2.3079 0.0011 6 7 4.2548 -0.0064 0.0016 7 6 3.6205 -1.1599 0.0070 8 6 4.4081 -2.4447 0.0145 9 6 2.2256 -1.2043 0.0007 10 6 1.5173 -2.4994 0.0008 11 8 1.2260 -3.0330 -1.0522 12 7 1.1935 -3.0903 1.1679 13 6 0.4910 -4.3759 1.1681 14 1 -0.1993 -4.4133 0.3254 15 6 1.5076 -5.5134 1.0474 16 6 0.7726 -6.8554 1.0143 17 6 -0.0058 -7.0390 2.3210 18 7 -0.8817 -5.8759 2.5171 19 6 -2.2235 -6.0418 2.7343 20 1 -2.9195 -5.2768 2.4230 21 6 -2.6893 -7.1930 3.3544 22 7 -1.8513 -7.9808 3.9942 23 14 -4.5054 -7.6242 3.2809 24 1 -5.2300 -6.5845 2.5068 25 1 -4.6748 -8.9421 2.6179 26 1 -5.0549 -7.6889 4.6589 27 6 -0.2905 -4.5315 2.4764 28 1 0.3825 -4.4025 3.3241 29 6 -1.4009 -3.4807 2.5386 30 1 -0.3633 0.0002 1.0277 31 1 -0.3634 0.8897 -0.5141 32 1 -0.3633 -0.8902 -0.5135 33 1 1.6934 2.1314 0.0004 34 1 4.5069 2.6447 0.8846 35 1 4.6028 -2.7575 -1.0113 36 1 5.3544 -2.2878 0.5323 37 1 3.8369 -3.2181 0.5281 38 1 1.4262 -2.6647 2.0081 39 1 2.1821 -5.4899 1.9033 40 1 2.0819 -5.3913 0.1291 41 1 1.4956 -7.6637 0.9050 42 1 0.0796 -6.8700 0.1730 43 1 -0.6090 -7.9451 2.2627 44 1 0.6924 -7.1154 3.1546 45 1 -2.1767 -8.7851 4.4279 46 1 -1.9636 -3.6012 3.4644 47 1 -0.9603 -2.4842 2.5088 48 1 -2.0699 -3.6083 1.6876 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000994504591.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:47:51 Heat of formation + Delta-G solvation = -53.496049 kcal Electronic energy + Delta-G solvation = -29721.768957 eV Core-core repulsion = 25776.140034 eV Total energy + Delta-G solvation = -3945.628924 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.08037 -40.75000 -39.25300 -38.10439 -35.90090 -35.37052 -34.26340 -33.47823 -32.82125 -30.90910 -29.07296 -28.86304 -27.76058 -26.85348 -25.05584 -23.60367 -22.39171 -22.32630 -21.66841 -21.09624 -19.45360 -18.84746 -18.31285 -18.17509 -17.42601 -16.86639 -16.61560 -15.90642 -15.74408 -15.57464 -15.34405 -15.19827 -14.82285 -14.79278 -14.48756 -14.34466 -14.26589 -14.14789 -13.82082 -13.35716 -13.32614 -13.24190 -13.13494 -12.93786 -12.82670 -12.69616 -12.61505 -12.49380 -12.35045 -11.98645 -11.81848 -11.75603 -11.64278 -11.27071 -11.08203 -10.62943 -10.52342 -10.50843 -10.06546 -9.89533 -8.63928 -7.83927 -5.29659 -0.32468 0.04716 1.44436 1.46640 1.50153 1.58657 1.99701 2.36877 2.54631 2.58494 3.32080 3.38467 3.44944 3.56026 3.71697 3.92006 3.97570 4.05578 4.20004 4.23377 4.29122 4.38459 4.41227 4.53069 4.54667 4.58080 4.64198 4.65250 4.79368 4.83825 4.90518 4.93705 4.97810 5.05364 5.10004 5.12849 5.16073 5.23072 5.29702 5.41379 5.46801 5.49279 5.61428 5.72703 5.79496 6.43330 6.47661 6.56241 6.80352 7.13102 7.18866 7.88750 8.39627 9.23018 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.021722 B = 0.002933 C = 0.002722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.677715 B = 9542.790085 C =10282.351246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.013 3.987 3 C -0.188 4.188 4 C 0.328 3.672 5 O -0.487 6.487 6 N -0.529 5.529 7 C 0.187 3.813 8 C -0.111 4.111 9 C -0.207 4.207 10 C 0.582 3.418 11 O -0.570 6.570 12 N -0.695 5.695 13 C 0.147 3.853 14 H 0.061 0.939 15 C -0.111 4.111 16 C -0.130 4.130 17 C 0.175 3.825 18 N -0.600 5.600 19 C -0.250 4.250 20 H 0.074 0.926 21 C -0.049 4.049 22 N -0.934 5.934 23 Si 0.959 3.041 24 H -0.267 1.267 25 H -0.295 1.295 26 H -0.293 1.293 27 C 0.165 3.835 28 H 0.034 0.966 29 C -0.128 4.128 30 H 0.103 0.897 31 H 0.102 0.898 32 H 0.055 0.945 33 H 0.177 0.823 34 H 0.425 0.575 35 H 0.084 0.916 36 H 0.097 0.903 37 H 0.077 0.923 38 H 0.412 0.588 39 H 0.068 0.932 40 H 0.058 0.942 41 H 0.072 0.928 42 H 0.044 0.956 43 H 0.055 0.945 44 H 0.004 0.996 45 H 0.248 0.752 46 H 0.048 0.952 47 H 0.076 0.924 48 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.301 19.275 -4.157 22.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.005 3.995 3 C -0.208 4.208 4 C 0.150 3.850 5 O -0.298 6.298 6 N -0.250 5.250 7 C 0.049 3.951 8 C -0.169 4.169 9 C -0.212 4.212 10 C 0.367 3.633 11 O -0.449 6.449 12 N -0.345 5.345 13 C 0.041 3.959 14 H 0.080 0.920 15 C -0.150 4.150 16 C -0.169 4.169 17 C 0.049 3.951 18 N -0.324 5.324 19 C -0.380 4.380 20 H 0.092 0.908 21 C -0.244 4.244 22 N -0.580 5.580 23 Si 0.788 3.212 24 H -0.191 1.191 25 H -0.222 1.222 26 H -0.220 1.220 27 C 0.058 3.942 28 H 0.051 0.949 29 C -0.186 4.186 30 H 0.121 0.879 31 H 0.121 0.879 32 H 0.074 0.926 33 H 0.194 0.806 34 H 0.287 0.713 35 H 0.103 0.897 36 H 0.116 0.884 37 H 0.096 0.904 38 H 0.248 0.752 39 H 0.087 0.913 40 H 0.077 0.923 41 H 0.090 0.910 42 H 0.063 0.937 43 H 0.073 0.927 44 H 0.022 0.978 45 H 0.057 0.943 46 H 0.067 0.933 47 H 0.095 0.905 48 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 10.896 18.801 -5.385 22.388 hybrid contribution -1.537 -0.594 0.897 1.876 sum 9.359 18.208 -4.488 20.959 Atomic orbital electron populations 1.21014 0.88114 1.04245 1.04747 1.20457 0.97831 0.90577 0.90672 1.22109 0.93189 1.00075 1.05468 1.19495 0.87765 0.85081 0.92668 1.84682 1.75822 1.33122 1.36164 1.67011 1.42462 0.98375 1.17164 1.21171 0.89209 0.93605 0.91150 1.20887 1.00855 0.91046 1.04066 1.20655 0.95026 0.94083 1.11441 1.18018 0.77681 0.83886 0.83710 1.90814 1.55468 1.65975 1.32684 1.45957 1.57986 1.22131 1.08440 1.21369 0.93218 0.81821 0.99476 0.92028 1.21706 0.97562 0.94222 1.01462 1.22019 0.98857 0.97073 0.98971 1.20649 0.91381 0.91008 0.92012 1.44280 1.04764 1.00326 1.83019 1.19490 0.83658 1.04308 1.30546 0.90843 1.25734 1.00882 1.00023 0.97801 1.70160 1.34912 1.15655 1.37284 0.85329 0.81302 0.77680 0.76897 1.19149 1.22184 1.22022 1.20718 0.94202 0.86275 0.93026 0.94888 1.21742 0.98095 0.97418 1.01321 0.87891 0.87948 0.92648 0.80597 0.71261 0.89748 0.88395 0.90386 0.75199 0.91337 0.92337 0.90970 0.93737 0.92695 0.97823 0.94299 0.93299 0.90509 0.93905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.97 9.69 71.24 0.69 -1.28 16 2 C 0.01 0.24 5.95 -19.43 -0.12 0.12 16 3 C -0.19 -2.93 9.73 22.43 0.22 -2.71 16 4 C 0.33 6.17 7.74 84.82 0.66 6.83 16 5 O -0.49 -7.02 13.55 -87.93 -1.19 -8.21 16 6 N -0.53 -12.20 10.29 -295.89 -3.04 -15.24 16 7 C 0.19 4.33 6.82 42.91 0.29 4.62 16 8 C -0.11 -2.26 9.78 71.23 0.70 -1.56 16 9 C -0.21 -4.85 5.65 -20.00 -0.11 -4.97 16 10 C 0.58 16.21 4.29 86.72 0.37 16.58 16 11 O -0.57 -20.86 16.77 -3.98 -0.07 -20.92 16 12 N -0.69 -17.78 4.58 -445.27 -2.04 -19.82 16 13 C 0.15 4.86 2.00 45.07 0.09 4.95 16 14 H 0.06 2.41 7.58 -2.39 -0.02 2.40 16 15 C -0.11 -3.63 5.46 30.62 0.17 -3.47 16 16 C -0.13 -4.89 6.08 30.67 0.19 -4.71 16 17 C 0.18 8.18 5.29 86.36 0.46 8.64 16 18 N -0.60 -28.38 2.99 -675.21 -2.02 -30.40 16 19 C -0.25 -13.01 8.60 84.03 0.72 -12.29 16 20 H 0.07 3.72 6.21 -2.91 -0.02 3.70 16 21 C -0.05 -2.66 4.96 84.86 0.42 -2.24 16 22 N -0.93 -53.69 11.14 21.65 0.24 -53.45 16 23 Si 0.96 44.04 29.58 68.60 2.03 46.07 16 24 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 25 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 26 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 27 C 0.16 6.10 3.03 44.98 0.14 6.24 16 28 H 0.03 1.22 8.14 -2.38 -0.02 1.20 16 29 C -0.13 -4.27 7.83 71.98 0.56 -3.70 16 30 H 0.10 1.29 8.14 -2.38 -0.02 1.27 16 31 H 0.10 1.13 8.10 -2.39 -0.02 1.11 16 32 H 0.05 1.19 7.19 -2.38 -0.02 1.17 16 33 H 0.18 1.60 8.06 -2.91 -0.02 1.58 16 34 H 0.43 1.53 9.06 -74.05 -0.67 0.86 16 35 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 36 H 0.10 1.68 8.14 -2.38 -0.02 1.66 16 37 H 0.08 1.60 7.06 -2.39 -0.02 1.58 16 38 H 0.41 8.41 8.59 -92.70 -0.80 7.61 16 39 H 0.07 2.08 8.14 -2.39 -0.02 2.07 16 40 H 0.06 1.86 8.14 -2.39 -0.02 1.85 16 41 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 42 H 0.04 1.78 8.14 -2.38 -0.02 1.76 16 43 H 0.05 2.95 6.06 -2.38 -0.01 2.93 16 44 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 45 H 0.25 13.90 8.31 -92.71 -0.77 13.12 16 46 H 0.05 1.78 7.62 -2.39 -0.02 1.76 16 47 H 0.08 1.92 7.80 -2.39 -0.02 1.90 16 48 H 0.04 1.52 7.45 -2.39 -0.02 1.50 16 Total: -1.00 -71.20 385.45 -1.12 -72.32 By element: Atomic # 1 Polarization: 19.07 SS G_CDS: -0.47 Total: 18.60 kcal Atomic # 6 Polarization: 5.61 SS G_CDS: 5.44 Total: 11.05 kcal Atomic # 7 Polarization: -112.05 SS G_CDS: -6.86 Total: -118.91 kcal Atomic # 8 Polarization: -27.88 SS G_CDS: -1.26 Total: -29.13 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.07 kcal Total: -71.20 -1.12 -72.32 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000994504591.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.827 kcal (2) G-P(sol) polarization free energy of solvation -71.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds