Wall clock time and date at job start Tue Mar 31 2020 17:35:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38355 * 119.40475 * 2 1 4 4 C 1.38344 * 119.45503 * 179.97438 * 3 2 1 5 5 C 1.50699 * 120.82238 * 180.02562 * 4 3 2 6 6 C 1.39979 * 118.35039 * 359.97438 * 4 3 2 7 7 C 1.47525 * 120.59889 * 179.97438 * 6 4 3 8 8 O 1.21584 * 120.00028 * 90.00034 * 7 6 4 9 9 N 1.34785 * 119.99747 * 270.00237 * 7 6 4 10 10 C 1.47018 * 125.64899 * 0.02562 * 9 7 6 11 11 C 1.54316 * 107.27144 * 181.02324 * 10 9 7 12 12 H 1.09005 * 110.72319 * 140.55686 * 11 10 9 13 13 N 1.46503 * 110.72365 * 263.83043 * 11 10 9 14 14 C 1.36939 * 119.99502 * 273.54660 * 13 11 10 15 15 H 1.07998 * 120.00325 * 359.97438 * 14 13 11 16 16 C 1.38813 * 119.99405 * 179.97438 * 14 13 11 17 17 N 1.31624 * 119.99900 * 179.97438 * 16 14 13 18 18 Si 1.86799 * 120.00341 * 0.02562 * 16 14 13 19 19 H 1.48505 * 109.47501 * 89.99600 * 18 16 14 20 20 H 1.48497 * 109.47296 * 209.99867 * 18 16 14 21 21 H 1.48506 * 109.46788 * 329.99923 * 18 16 14 22 22 C 1.55163 * 102.94256 * 22.19185 * 11 10 9 23 23 C 1.53006 * 111.00088 * 82.57286 * 22 11 10 24 24 C 1.53002 * 111.00384 * 206.38301 * 22 11 10 25 25 C 1.47422 * 125.64435 * 179.71453 * 9 7 6 26 26 C 1.40280 * 118.80751 * 0.02562 * 6 4 3 27 27 O 1.35423 * 119.80314 * 180.02562 * 26 6 4 28 28 N 1.31881 * 119.40826 * 179.72140 * 2 1 3 29 29 H 1.09001 * 109.46953 * 90.00034 * 1 2 3 30 30 H 1.09000 * 109.47318 * 209.99632 * 1 2 3 31 31 H 1.09000 * 109.47161 * 330.00262 * 1 2 3 32 32 H 1.08001 * 120.27202 * 359.97438 * 3 2 1 33 33 H 1.08996 * 109.47357 * 89.99981 * 5 4 3 34 34 H 1.09003 * 109.46873 * 209.99930 * 5 4 3 35 35 H 1.09000 * 109.47229 * 329.99917 * 5 4 3 36 36 H 1.09008 * 109.88319 * 300.44281 * 10 9 7 37 37 H 1.08997 * 109.88290 * 61.44967 * 10 9 7 38 38 H 0.96997 * 120.00159 * 93.54055 * 13 11 10 39 39 H 0.96997 * 120.00018 * 180.02562 * 17 16 14 40 40 H 1.08996 * 109.47079 * 60.00129 * 23 22 11 41 41 H 1.08998 * 109.46687 * 179.97438 * 23 22 11 42 42 H 1.08997 * 109.46838 * 300.00099 * 23 22 11 43 43 H 1.08995 * 109.46707 * 60.00100 * 24 22 11 44 44 H 1.08999 * 109.46659 * 180.02562 * 24 22 11 45 45 H 1.08995 * 109.47324 * 299.99711 * 24 22 11 46 46 H 1.08999 * 110.36538 * 274.74309 * 25 9 7 47 47 H 1.09000 * 110.36729 * 37.06831 * 25 9 7 48 48 H 0.96701 * 114.00383 * 90.00030 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1864 1.2053 0.0000 4 6 3.5698 1.2065 0.0005 5 6 4.3408 2.5013 0.0011 6 6 4.2356 -0.0248 0.0016 7 6 5.7097 -0.0814 0.0017 8 8 6.3172 -0.1038 1.0546 9 7 6.3831 -0.1082 -1.1656 10 6 5.7773 -0.0855 -2.5050 11 6 6.9288 -0.1571 -3.5299 12 1 6.6585 -0.7977 -4.3695 13 7 7.2928 1.1835 -3.9952 14 6 6.6234 1.7480 -5.0480 15 1 5.8275 1.2047 -5.5356 16 6 6.9680 3.0185 -5.4885 17 7 6.3250 3.5609 -6.5008 18 14 8.3451 3.9578 -4.6456 19 1 9.6359 3.6474 -5.3112 20 1 8.0787 5.4157 -4.7379 21 1 8.4157 3.5569 -3.2174 22 6 8.0857 -0.7864 -2.7094 23 6 7.9577 -2.3103 -2.6607 24 6 9.4464 -0.3710 -3.2724 25 6 7.8493 -0.1586 -1.3106 26 6 3.4758 -1.2040 0.0016 27 8 4.0992 -2.4063 0.0031 28 7 2.1546 -1.1489 0.0056 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5138 32 1 1.6411 2.1376 -0.0004 33 1 4.5263 2.8133 1.0289 34 1 5.2916 2.3583 -0.5124 35 1 3.7622 3.2690 -0.5128 36 1 5.1175 -0.9445 -2.6280 37 1 5.2135 0.8373 -2.6413 38 1 8.0078 1.6713 -3.5574 39 1 6.5660 4.4485 -6.8089 40 1 7.9902 -2.7102 -3.6741 41 1 8.7813 -2.7256 -2.0800 42 1 7.0107 -2.5806 -2.1936 43 1 9.5399 0.7142 -3.2329 44 1 10.2393 -0.8263 -2.6791 45 1 9.5292 -0.7054 -4.3065 46 1 8.2696 0.8462 -1.2673 47 1 8.2859 -0.7872 -0.5345 48 1 4.2792 -2.7549 0.8870 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996115303.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:35:45 Heat of formation + Delta-G solvation = -25.407557 kcal Electronic energy + Delta-G solvation = -30396.904966 eV Core-core repulsion = 26452.494050 eV Total energy + Delta-G solvation = -3944.410915 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.06916 -39.76349 -37.93845 -37.44511 -34.35744 -34.05396 -33.20144 -31.87890 -31.13396 -28.77017 -28.30475 -27.70445 -26.90729 -26.08878 -23.84177 -23.24007 -21.85253 -21.29011 -19.53226 -19.09407 -18.53400 -17.64006 -17.34529 -17.05841 -15.98012 -15.67602 -15.42315 -14.69647 -14.48110 -14.45822 -14.19938 -13.83423 -13.71695 -13.39873 -13.12573 -13.07461 -12.93153 -12.74394 -12.54552 -12.51700 -12.24485 -12.13145 -12.10765 -11.97772 -11.79292 -11.69853 -11.68250 -11.30683 -11.04906 -10.69081 -10.58944 -10.33746 -10.20787 -9.94516 -9.65372 -9.63065 -9.45231 -9.07380 -8.89464 -8.38980 -7.41278 -5.87370 -3.24387 0.68943 0.99990 2.61975 3.10207 3.23629 3.28653 3.31315 3.37928 3.59702 4.30591 4.41900 4.48892 4.50044 4.77797 4.87973 4.94342 5.02710 5.08291 5.17297 5.25107 5.27599 5.37974 5.45588 5.48075 5.50179 5.52809 5.64517 5.70219 5.75443 5.81078 5.83512 5.95906 5.97058 6.00550 6.07294 6.09162 6.14570 6.22046 6.25365 6.33888 6.43812 6.49509 6.63791 6.66178 7.30002 7.67526 7.74784 7.87684 8.21609 8.31314 9.08438 9.80723 9.99583 11.30435 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.011329 B = 0.004567 C = 0.003815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2470.951075 B = 6129.962922 C = 7337.182236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.165 3.835 3 C -0.184 4.184 4 C 0.015 3.985 5 C -0.125 4.125 6 C -0.190 4.190 7 C 0.589 3.411 8 O -0.548 6.548 9 N -0.592 5.592 10 C 0.074 3.926 11 C 0.186 3.814 12 H 0.080 0.920 13 N -0.737 5.737 14 C -0.248 4.248 15 H 0.092 0.908 16 C 0.012 3.988 17 N -0.929 5.929 18 Si 0.878 3.122 19 H -0.282 1.282 20 H -0.290 1.290 21 H -0.278 1.278 22 C -0.091 4.091 23 C -0.130 4.130 24 C -0.127 4.127 25 C 0.119 3.881 26 C 0.352 3.648 27 O -0.474 6.474 28 N -0.507 5.507 29 H 0.084 0.916 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.145 0.855 33 H 0.083 0.917 34 H 0.077 0.923 35 H 0.083 0.917 36 H 0.059 0.941 37 H 0.078 0.922 38 H 0.363 0.637 39 H 0.260 0.740 40 H 0.060 0.940 41 H 0.054 0.946 42 H 0.057 0.943 43 H 0.058 0.942 44 H 0.050 0.950 45 H 0.066 0.934 46 H 0.067 0.933 47 H 0.074 0.926 48 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.429 -8.120 13.955 17.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.027 3.973 3 C -0.204 4.204 4 C 0.007 3.993 5 C -0.182 4.182 6 C -0.196 4.196 7 C 0.376 3.624 8 O -0.427 6.427 9 N -0.324 5.324 10 C -0.051 4.051 11 C 0.074 3.926 12 H 0.097 0.903 13 N -0.379 5.379 14 C -0.378 4.378 15 H 0.110 0.890 16 C -0.185 4.185 17 N -0.576 5.576 18 Si 0.708 3.292 19 H -0.208 1.208 20 H -0.217 1.217 21 H -0.204 1.204 22 C -0.092 4.092 23 C -0.187 4.187 24 C -0.185 4.185 25 C -0.004 4.004 26 C 0.172 3.828 27 O -0.282 6.282 28 N -0.227 5.227 29 H 0.102 0.898 30 H 0.097 0.903 31 H 0.097 0.903 32 H 0.162 0.838 33 H 0.102 0.898 34 H 0.096 0.904 35 H 0.102 0.898 36 H 0.077 0.923 37 H 0.096 0.904 38 H 0.198 0.802 39 H 0.071 0.929 40 H 0.079 0.921 41 H 0.073 0.927 42 H 0.076 0.924 43 H 0.077 0.923 44 H 0.069 0.931 45 H 0.085 0.915 46 H 0.085 0.915 47 H 0.093 0.907 48 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges -5.727 -8.808 13.742 17.298 hybrid contribution 1.351 1.493 0.919 2.213 sum -4.376 -7.315 14.661 16.958 Atomic orbital electron populations 1.20787 0.88178 1.03667 1.03638 1.21136 0.96917 0.87058 0.92179 1.21787 0.93604 0.99671 1.05340 1.20277 0.93698 0.94264 0.91020 1.20953 1.00668 0.93191 1.03349 1.20797 0.94799 0.94113 1.09939 1.17364 0.85847 0.76347 0.82835 1.90775 1.69454 1.51749 1.30716 1.48362 1.07608 1.70422 1.05966 1.23218 0.98686 1.01669 0.81544 1.21179 0.90150 0.87897 0.93356 0.90251 1.42808 1.42165 1.14513 1.38425 1.19043 1.14001 0.98851 1.05910 0.89016 1.24632 0.98904 0.97109 0.97830 1.69692 1.43205 1.16776 1.27936 0.86667 0.83246 0.79970 0.79313 1.20834 1.21651 1.20409 1.22090 0.96983 0.95783 0.94369 1.21672 1.01766 0.93340 1.01952 1.21599 0.94130 1.01553 1.01179 1.22364 0.80230 1.00632 0.97141 1.18929 0.86343 0.84260 0.93218 1.84703 1.76749 1.32754 1.33969 1.67014 1.09040 1.30421 1.16242 0.89793 0.90258 0.90274 0.83770 0.89834 0.90437 0.89823 0.92282 0.90407 0.80213 0.92943 0.92083 0.92709 0.92370 0.92317 0.93098 0.91522 0.91495 0.90745 0.73876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.85 10.16 36.01 0.37 -0.49 16 2 C 0.16 1.97 6.78 -82.53 -0.56 1.41 16 3 C -0.18 -2.14 9.41 -39.50 -0.37 -2.52 16 4 C 0.02 0.21 5.95 -103.93 -0.62 -0.41 16 5 C -0.13 -1.63 9.69 36.01 0.35 -1.28 16 6 C -0.19 -2.95 4.84 -104.69 -0.51 -3.45 16 7 C 0.59 10.07 5.45 -12.47 -0.07 10.00 16 8 O -0.55 -10.55 17.36 5.29 0.09 -10.46 16 9 N -0.59 -9.87 3.31 -171.62 -0.57 -10.44 16 10 C 0.07 1.29 5.89 -3.07 -0.02 1.28 16 11 C 0.19 3.31 2.86 -66.10 -0.19 3.13 16 12 H 0.08 1.44 8.03 -51.93 -0.42 1.03 16 13 N -0.74 -15.97 4.42 -51.65 -0.23 -16.19 16 14 C -0.25 -6.51 10.46 -15.06 -0.16 -6.67 16 15 H 0.09 2.59 8.06 -52.49 -0.42 2.17 16 16 C 0.01 0.32 5.50 -17.43 -0.10 0.23 16 17 N -0.93 -27.94 13.97 55.49 0.78 -27.17 16 18 Si 0.88 21.14 27.74 -169.99 -4.71 16.42 16 19 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 20 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 21 H -0.28 -6.33 6.52 56.52 0.37 -5.96 16 22 C -0.09 -1.34 0.83 -152.23 -0.13 -1.47 16 23 C -0.13 -1.65 8.59 37.16 0.32 -1.33 16 24 C -0.13 -1.81 8.22 37.16 0.31 -1.51 16 25 C 0.12 1.86 5.82 -2.41 -0.01 1.85 16 26 C 0.35 5.24 7.77 -16.61 -0.13 5.11 16 27 O -0.47 -6.42 13.01 -17.96 -0.23 -6.65 16 28 N -0.51 -7.22 10.28 -9.21 -0.09 -7.31 16 29 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.08 0.46 8.07 -51.93 -0.42 0.04 16 32 H 0.14 1.24 8.06 -52.49 -0.42 0.82 16 33 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.08 1.20 7.19 -51.93 -0.37 0.82 16 35 H 0.08 0.94 8.10 -51.93 -0.42 0.52 16 36 H 0.06 1.00 8.14 -51.92 -0.42 0.58 16 37 H 0.08 1.52 8.05 -51.93 -0.42 1.10 16 38 H 0.36 7.87 3.96 -40.82 -0.16 7.71 16 39 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 40 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 42 H 0.06 0.78 7.91 -51.93 -0.41 0.37 16 43 H 0.06 0.93 6.38 -51.93 -0.33 0.60 16 44 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 45 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 46 H 0.07 1.11 7.99 -51.93 -0.41 0.69 16 47 H 0.07 1.12 7.95 -51.93 -0.41 0.71 16 48 H 0.40 3.69 9.06 45.56 0.41 4.10 16 LS Contribution 391.29 15.07 5.90 5.90 Total: -1.00 -33.11 391.29 -7.35 -40.46 By element: Atomic # 1 Polarization: 18.32 SS G_CDS: -6.76 Total: 11.56 kcal Atomic # 6 Polarization: 5.40 SS G_CDS: -1.52 Total: 3.88 kcal Atomic # 7 Polarization: -60.99 SS G_CDS: -0.12 Total: -61.11 kcal Atomic # 8 Polarization: -16.97 SS G_CDS: -0.14 Total: -17.12 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -4.71 Total: 16.42 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -33.11 -7.35 -40.46 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996115303.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.057 kcal (2) G-P(sol) polarization free energy of solvation -33.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds