Wall clock time and date at job start Tue Mar 31 2020 17:35:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38355 * 119.40475 * 2 1 4 4 C 1.38344 * 119.45503 * 179.97438 * 3 2 1 5 5 C 1.50699 * 120.82238 * 180.02562 * 4 3 2 6 6 C 1.39979 * 118.35039 * 359.97438 * 4 3 2 7 7 C 1.47525 * 120.59889 * 179.97438 * 6 4 3 8 8 O 1.21584 * 120.00028 * 90.00034 * 7 6 4 9 9 N 1.34785 * 119.99747 * 270.00237 * 7 6 4 10 10 C 1.47018 * 125.64899 * 0.02562 * 9 7 6 11 11 C 1.54316 * 107.27144 * 181.02324 * 10 9 7 12 12 H 1.09005 * 110.72319 * 140.55686 * 11 10 9 13 13 N 1.46503 * 110.72365 * 263.83043 * 11 10 9 14 14 C 1.36939 * 119.99502 * 273.54660 * 13 11 10 15 15 H 1.07998 * 120.00325 * 359.97438 * 14 13 11 16 16 C 1.38813 * 119.99405 * 179.97438 * 14 13 11 17 17 N 1.31624 * 119.99900 * 179.97438 * 16 14 13 18 18 Si 1.86799 * 120.00341 * 0.02562 * 16 14 13 19 19 H 1.48505 * 109.47501 * 89.99600 * 18 16 14 20 20 H 1.48497 * 109.47296 * 209.99867 * 18 16 14 21 21 H 1.48506 * 109.46788 * 329.99923 * 18 16 14 22 22 C 1.55163 * 102.94256 * 22.19185 * 11 10 9 23 23 C 1.53006 * 111.00088 * 82.57286 * 22 11 10 24 24 C 1.53002 * 111.00384 * 206.38301 * 22 11 10 25 25 C 1.47422 * 125.64435 * 179.71453 * 9 7 6 26 26 C 1.40280 * 118.80751 * 0.02562 * 6 4 3 27 27 O 1.35423 * 119.80314 * 180.02562 * 26 6 4 28 28 N 1.31881 * 119.40826 * 179.72140 * 2 1 3 29 29 H 1.09001 * 109.46953 * 90.00034 * 1 2 3 30 30 H 1.09000 * 109.47318 * 209.99632 * 1 2 3 31 31 H 1.09000 * 109.47161 * 330.00262 * 1 2 3 32 32 H 1.08001 * 120.27202 * 359.97438 * 3 2 1 33 33 H 1.08996 * 109.47357 * 89.99981 * 5 4 3 34 34 H 1.09003 * 109.46873 * 209.99930 * 5 4 3 35 35 H 1.09000 * 109.47229 * 329.99917 * 5 4 3 36 36 H 1.09008 * 109.88319 * 300.44281 * 10 9 7 37 37 H 1.08997 * 109.88290 * 61.44967 * 10 9 7 38 38 H 0.96997 * 120.00159 * 93.54055 * 13 11 10 39 39 H 0.96997 * 120.00018 * 180.02562 * 17 16 14 40 40 H 1.08996 * 109.47079 * 60.00129 * 23 22 11 41 41 H 1.08998 * 109.46687 * 179.97438 * 23 22 11 42 42 H 1.08997 * 109.46838 * 300.00099 * 23 22 11 43 43 H 1.08995 * 109.46707 * 60.00100 * 24 22 11 44 44 H 1.08999 * 109.46659 * 180.02562 * 24 22 11 45 45 H 1.08995 * 109.47324 * 299.99711 * 24 22 11 46 46 H 1.08999 * 110.36538 * 274.74309 * 25 9 7 47 47 H 1.09000 * 110.36729 * 37.06831 * 25 9 7 48 48 H 0.96701 * 114.00383 * 90.00030 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1864 1.2053 0.0000 4 6 3.5698 1.2065 0.0005 5 6 4.3408 2.5013 0.0011 6 6 4.2356 -0.0248 0.0016 7 6 5.7097 -0.0814 0.0017 8 8 6.3172 -0.1038 1.0546 9 7 6.3831 -0.1082 -1.1656 10 6 5.7773 -0.0855 -2.5050 11 6 6.9288 -0.1571 -3.5299 12 1 6.6585 -0.7977 -4.3695 13 7 7.2928 1.1835 -3.9952 14 6 6.6234 1.7480 -5.0480 15 1 5.8275 1.2047 -5.5356 16 6 6.9680 3.0185 -5.4885 17 7 6.3250 3.5609 -6.5008 18 14 8.3451 3.9578 -4.6456 19 1 9.6359 3.6474 -5.3112 20 1 8.0787 5.4157 -4.7379 21 1 8.4157 3.5569 -3.2174 22 6 8.0857 -0.7864 -2.7094 23 6 7.9577 -2.3103 -2.6607 24 6 9.4464 -0.3710 -3.2724 25 6 7.8493 -0.1586 -1.3106 26 6 3.4758 -1.2040 0.0016 27 8 4.0992 -2.4063 0.0031 28 7 2.1546 -1.1489 0.0056 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5138 32 1 1.6411 2.1376 -0.0004 33 1 4.5263 2.8133 1.0289 34 1 5.2916 2.3583 -0.5124 35 1 3.7622 3.2690 -0.5128 36 1 5.1175 -0.9445 -2.6280 37 1 5.2135 0.8373 -2.6413 38 1 8.0078 1.6713 -3.5574 39 1 6.5660 4.4485 -6.8089 40 1 7.9902 -2.7102 -3.6741 41 1 8.7813 -2.7256 -2.0800 42 1 7.0107 -2.5806 -2.1936 43 1 9.5399 0.7142 -3.2329 44 1 10.2393 -0.8263 -2.6791 45 1 9.5292 -0.7054 -4.3065 46 1 8.2696 0.8462 -1.2673 47 1 8.2859 -0.7872 -0.5345 48 1 4.2792 -2.7549 0.8870 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000996115303.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:35:44 Heat of formation + Delta-G solvation = -50.277704 kcal Electronic energy + Delta-G solvation = -30397.983416 eV Core-core repulsion = 26452.494050 eV Total energy + Delta-G solvation = -3945.489366 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.19481 -41.02071 -39.29653 -38.45965 -35.87888 -35.39545 -34.53277 -33.06381 -32.80069 -29.89704 -29.73375 -28.64246 -28.12769 -27.24258 -25.55025 -24.38245 -23.18240 -22.53425 -20.80274 -20.57570 -19.55402 -19.42225 -18.47954 -18.29451 -17.36275 -16.88452 -16.69663 -16.29208 -16.11491 -15.46861 -15.32108 -15.07455 -14.95246 -14.61650 -14.43138 -14.30996 -14.08430 -14.00267 -13.84419 -13.66720 -13.53888 -13.30238 -13.23674 -13.00561 -12.94997 -12.85762 -12.82983 -12.76673 -12.66702 -12.26422 -11.97519 -11.93806 -11.63655 -11.48354 -11.31378 -11.03059 -10.66692 -10.55106 -9.89328 -9.79075 -9.36045 -8.02025 -5.35849 -0.33005 -0.01827 1.30097 1.36340 1.37863 1.44579 1.85040 2.26941 2.46572 2.57017 3.14229 3.26651 3.40087 3.47027 3.49757 3.61420 3.72138 3.90740 3.95743 4.12360 4.19441 4.22236 4.37722 4.44434 4.46453 4.50139 4.54577 4.56178 4.68667 4.79772 4.80195 4.85385 4.88616 4.90519 4.97793 5.02229 5.03297 5.06357 5.12754 5.15360 5.23416 5.34427 5.47371 5.48284 5.77904 6.21329 6.32451 6.38857 6.74794 6.88196 7.06494 7.80679 8.00073 9.19083 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.011329 B = 0.004567 C = 0.003815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2470.951075 B = 6129.962922 C = 7337.182236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.162 3.838 3 C -0.179 4.179 4 C 0.002 3.998 5 C -0.122 4.122 6 C -0.217 4.217 7 C 0.593 3.407 8 O -0.574 6.574 9 N -0.592 5.592 10 C 0.091 3.909 11 C 0.177 3.823 12 H 0.077 0.923 13 N -0.736 5.736 14 C -0.225 4.225 15 H 0.062 0.938 16 C -0.051 4.051 17 N -0.979 5.979 18 Si 0.940 3.060 19 H -0.275 1.275 20 H -0.299 1.299 21 H -0.259 1.259 22 C -0.077 4.077 23 C -0.124 4.124 24 C -0.126 4.126 25 C 0.116 3.884 26 C 0.345 3.655 27 O -0.484 6.484 28 N -0.525 5.525 29 H 0.092 0.908 30 H 0.081 0.919 31 H 0.108 0.892 32 H 0.179 0.821 33 H 0.095 0.905 34 H 0.047 0.953 35 H 0.100 0.900 36 H 0.063 0.937 37 H 0.052 0.948 38 H 0.366 0.634 39 H 0.257 0.743 40 H 0.069 0.931 41 H 0.076 0.924 42 H 0.049 0.951 43 H 0.041 0.959 44 H 0.080 0.920 45 H 0.063 0.937 46 H 0.058 0.942 47 H 0.085 0.915 48 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.420 -8.642 15.524 18.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.024 3.976 3 C -0.198 4.198 4 C -0.006 4.006 5 C -0.178 4.178 6 C -0.223 4.223 7 C 0.382 3.618 8 O -0.454 6.454 9 N -0.323 5.323 10 C -0.034 4.034 11 C 0.067 3.933 12 H 0.095 0.905 13 N -0.379 5.379 14 C -0.356 4.356 15 H 0.080 0.920 16 C -0.244 4.244 17 N -0.629 5.629 18 Si 0.768 3.232 19 H -0.201 1.201 20 H -0.225 1.225 21 H -0.184 1.184 22 C -0.079 4.079 23 C -0.181 4.181 24 C -0.183 4.183 25 C -0.006 4.006 26 C 0.165 3.835 27 O -0.294 6.294 28 N -0.245 5.245 29 H 0.111 0.889 30 H 0.100 0.900 31 H 0.126 0.874 32 H 0.196 0.804 33 H 0.114 0.886 34 H 0.066 0.934 35 H 0.119 0.881 36 H 0.081 0.919 37 H 0.071 0.929 38 H 0.201 0.799 39 H 0.066 0.934 40 H 0.088 0.912 41 H 0.095 0.905 42 H 0.068 0.932 43 H 0.060 0.940 44 H 0.099 0.901 45 H 0.082 0.918 46 H 0.076 0.924 47 H 0.104 0.896 48 H 0.279 0.721 Dipole moment (debyes) X Y Z Total from point charges -5.703 -9.387 15.356 18.880 hybrid contribution 1.227 1.561 0.454 2.036 sum -4.477 -7.827 15.810 18.200 Atomic orbital electron populations 1.20928 0.85244 1.05258 1.04581 1.21874 0.98787 0.86572 0.90324 1.22157 0.92710 1.01105 1.03853 1.20527 0.94910 0.93887 0.91254 1.20942 0.99399 0.93512 1.03945 1.20791 0.93836 0.95261 1.12458 1.17602 0.86587 0.75337 0.82321 1.90743 1.70291 1.52992 1.31422 1.48383 1.08041 1.70264 1.05569 1.22865 0.98113 1.00521 0.81930 1.21371 0.91940 0.86212 0.93757 0.90517 1.42734 1.41831 1.15891 1.37409 1.18977 1.12489 0.98300 1.05836 0.91968 1.25305 1.01767 0.98356 0.98922 1.69857 1.45608 1.17192 1.30266 0.85644 0.80361 0.77869 0.79281 1.20137 1.22548 1.18426 1.22057 0.95988 0.97050 0.92758 1.21639 1.02230 0.91359 1.02878 1.21603 0.94480 1.00675 1.01591 1.22457 0.79690 1.00506 0.97990 1.19027 0.86747 0.84334 0.93363 1.84645 1.76787 1.32471 1.35526 1.67127 1.08641 1.31657 1.17113 0.88931 0.90024 0.87391 0.80357 0.88612 0.93389 0.88081 0.91871 0.92912 0.79889 0.93398 0.91218 0.90494 0.93236 0.93951 0.90129 0.91762 0.92380 0.89647 0.72070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.37 10.16 71.24 0.72 -0.65 16 2 C 0.16 3.56 6.78 42.58 0.29 3.85 16 3 C -0.18 -3.79 9.41 22.32 0.21 -3.58 16 4 C 0.00 0.06 5.95 -19.42 -0.12 -0.06 16 5 C -0.12 -3.08 9.69 71.24 0.69 -2.39 16 6 C -0.22 -6.70 4.84 -19.91 -0.10 -6.80 16 7 C 0.59 20.29 5.45 86.69 0.47 20.76 16 8 O -0.57 -22.08 17.36 -3.98 -0.07 -22.15 16 9 N -0.59 -19.59 3.31 -815.13 -2.70 -22.29 16 10 C 0.09 3.20 5.89 86.73 0.51 3.71 16 11 C 0.18 6.26 2.86 46.18 0.13 6.40 16 12 H 0.08 2.78 8.03 -2.38 -0.02 2.76 16 13 N -0.74 -31.78 4.42 -317.32 -1.40 -33.18 16 14 C -0.23 -12.01 10.46 84.03 0.88 -11.13 16 15 H 0.06 3.64 8.06 -2.91 -0.02 3.62 16 16 C -0.05 -2.90 5.50 84.86 0.47 -2.43 16 17 N -0.98 -60.44 13.97 21.65 0.30 -60.13 16 18 Si 0.94 43.88 27.74 68.60 1.90 45.78 16 19 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 20 H -0.30 -14.29 7.11 99.48 0.71 -13.58 16 21 H -0.26 -11.12 6.52 99.48 0.65 -10.48 16 22 C -0.08 -2.15 0.83 -50.71 -0.04 -2.20 16 23 C -0.12 -2.84 8.59 71.98 0.62 -2.22 16 24 C -0.13 -3.31 8.22 71.98 0.59 -2.72 16 25 C 0.12 3.49 5.82 86.93 0.51 4.00 16 26 C 0.34 10.15 7.77 85.13 0.66 10.81 16 27 O -0.48 -12.99 13.01 -87.18 -1.13 -14.13 16 28 N -0.52 -14.44 10.28 -296.06 -3.04 -17.48 16 29 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.11 0.83 8.07 -2.39 -0.02 0.81 16 32 H 0.18 2.43 8.06 -2.91 -0.02 2.41 16 33 H 0.10 2.14 8.14 -2.39 -0.02 2.12 16 34 H 0.05 1.49 7.19 -2.39 -0.02 1.48 16 35 H 0.10 2.14 8.10 -2.39 -0.02 2.12 16 36 H 0.06 2.16 8.14 -2.38 -0.02 2.14 16 37 H 0.05 2.11 8.05 -2.39 -0.02 2.10 16 38 H 0.37 15.52 3.96 -92.71 -0.37 15.16 16 39 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 40 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 41 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 42 H 0.05 1.24 7.91 -2.39 -0.02 1.22 16 43 H 0.04 1.25 6.38 -2.39 -0.02 1.24 16 44 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 45 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 46 H 0.06 1.86 7.99 -2.39 -0.02 1.84 16 47 H 0.09 2.42 7.95 -2.39 -0.02 2.40 16 48 H 0.42 7.57 9.06 -74.06 -0.67 6.90 16 Total: -1.00 -73.11 391.29 0.24 -72.87 By element: Atomic # 1 Polarization: 35.46 SS G_CDS: -0.12 Total: 35.35 kcal Atomic # 6 Polarization: 8.85 SS G_CDS: 6.50 Total: 15.35 kcal Atomic # 7 Polarization: -126.24 SS G_CDS: -6.84 Total: -133.08 kcal Atomic # 8 Polarization: -35.07 SS G_CDS: -1.20 Total: -36.27 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 1.90 Total: 45.78 kcal Total: -73.11 0.24 -72.87 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996115303.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.597 kcal (2) G-P(sol) polarization free energy of solvation -73.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds