Wall clock time and date at job start Tue Mar 31 2020 17:35:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38361 * 119.40958 * 2 1 4 4 C 1.38332 * 119.45860 * 180.02562 * 3 2 1 5 5 C 1.50702 * 120.82149 * 179.97438 * 4 3 2 6 6 C 1.39983 * 118.34919 * 0.02562 * 4 3 2 7 7 C 1.47530 * 120.59626 * 180.02562 * 6 4 3 8 8 O 1.21593 * 119.99650 * 89.99849 * 7 6 4 9 9 N 1.34773 * 120.00074 * 270.00114 * 7 6 4 10 10 C 1.48141 * 127.83857 * 359.97438 * 9 7 6 11 11 C 1.54384 * 104.61841 * 219.58494 * 10 9 7 12 12 H 1.09004 * 110.34379 * 217.26133 * 11 10 9 13 13 N 1.46502 * 110.34180 * 95.00654 * 11 10 9 14 14 C 1.36935 * 120.00188 * 89.46633 * 13 11 10 15 15 H 1.07994 * 120.00287 * 359.97438 * 14 13 11 16 16 C 1.38818 * 119.99657 * 180.02562 * 14 13 11 17 17 N 1.31608 * 120.00254 * 359.97438 * 16 14 13 18 18 Si 1.86807 * 119.99566 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.47072 * 89.99950 * 18 16 14 20 20 H 1.48502 * 109.46695 * 210.00013 * 18 16 14 21 21 H 1.48503 * 109.46976 * 329.99801 * 18 16 14 22 22 C 1.54286 * 104.96107 * 336.13319 * 11 10 9 23 23 C 1.52999 * 110.34277 * 118.87108 * 22 11 10 24 24 C 1.52996 * 110.34236 * 241.01965 * 22 11 10 25 25 C 1.48150 * 127.83762 * 179.97438 * 9 7 6 26 26 C 1.40276 * 118.80997 * 0.26892 * 6 4 3 27 27 O 1.35421 * 119.80057 * 179.72321 * 26 6 4 28 28 N 1.31882 * 119.40760 * 180.02562 * 2 1 3 29 29 H 1.08994 * 109.47771 * 89.99698 * 1 2 3 30 30 H 1.09005 * 109.46671 * 209.99753 * 1 2 3 31 31 H 1.09008 * 109.46894 * 329.99481 * 1 2 3 32 32 H 1.08001 * 120.26557 * 359.97438 * 3 2 1 33 33 H 1.09008 * 109.46995 * 270.02153 * 5 4 3 34 34 H 1.09000 * 109.47347 * 30.02439 * 5 4 3 35 35 H 1.09004 * 109.47058 * 150.02619 * 5 4 3 36 36 H 1.09006 * 110.41042 * 100.80325 * 10 9 7 37 37 H 1.09007 * 110.40752 * 338.37282 * 10 9 7 38 38 H 0.96999 * 119.99627 * 269.46330 * 13 11 10 39 39 H 0.97008 * 120.00174 * 180.02562 * 17 16 14 40 40 H 1.08997 * 109.47416 * 59.99713 * 23 22 11 41 41 H 1.08993 * 109.47391 * 180.02562 * 23 22 11 42 42 H 1.09004 * 109.46964 * 300.00027 * 23 22 11 43 43 H 1.09009 * 109.46932 * 60.00137 * 24 22 11 44 44 H 1.08997 * 109.47011 * 179.97438 * 24 22 11 45 45 H 1.08994 * 109.47814 * 300.00158 * 24 22 11 46 46 H 1.09001 * 110.40703 * 21.63048 * 25 9 7 47 47 H 1.08996 * 110.40508 * 259.19762 * 25 9 7 48 48 H 0.96703 * 113.99656 * 90.01040 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1864 1.2053 0.0000 4 6 3.5697 1.2065 -0.0005 5 6 4.3408 2.5013 -0.0011 6 6 4.2355 -0.0249 -0.0016 7 6 5.7097 -0.0815 -0.0017 8 8 6.3172 -0.1057 1.0514 9 7 6.3831 -0.1063 -1.1688 10 6 5.8247 -0.0841 -2.5408 11 6 6.7072 -1.0697 -3.3366 12 1 6.8687 -0.7009 -4.3495 13 7 6.0867 -2.3964 -3.3695 14 6 5.2160 -2.7204 -4.3755 15 1 4.9863 -1.9977 -5.1445 16 6 4.6277 -3.9773 -4.4063 17 7 4.9071 -4.8579 -3.4689 18 14 3.4393 -4.4190 -5.7783 19 1 4.1910 -5.0163 -6.9111 20 1 2.4431 -5.3980 -5.2741 21 1 2.7391 -3.1935 -6.2402 22 6 8.0424 -1.1210 -2.5652 23 6 8.3150 -2.5419 -2.0677 24 6 9.1900 -0.6411 -3.4560 25 6 7.8497 -0.1619 -1.3709 26 6 3.4758 -1.2041 -0.0079 27 8 4.0992 -2.4063 -0.0147 28 7 2.1546 -1.1489 -0.0005 29 1 -0.3634 0.0001 -1.0276 30 1 -0.3633 -0.8901 0.5138 31 1 -0.3633 0.8900 0.5140 32 1 1.6411 2.1375 -0.0004 33 1 4.5259 2.8135 -1.0290 34 1 3.7624 3.2689 0.5131 35 1 5.2918 2.3581 0.5120 36 1 5.8967 0.9177 -2.9644 37 1 4.7882 -0.4216 -2.5348 38 1 6.2927 -3.0454 -2.6786 39 1 4.4963 -5.7364 -3.4906 40 1 8.3698 -3.2206 -2.9188 41 1 9.2600 -2.5619 -1.5251 42 1 7.5089 -2.8555 -1.4043 43 1 9.0007 0.3851 -3.7711 44 1 10.1251 -0.6827 -2.8976 45 1 9.2617 -1.2833 -4.3337 46 1 8.3411 -0.5580 -0.4822 47 1 8.2379 0.8277 -1.6117 48 1 4.2803 -2.7603 0.8667 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996115306.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:35:48 Heat of formation + Delta-G solvation = -18.979797 kcal Electronic energy + Delta-G solvation = -30782.301024 eV Core-core repulsion = 26838.168837 eV Total energy + Delta-G solvation = -3944.132187 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.82750 -39.52548 -37.75882 -37.04776 -34.19820 -33.87497 -33.05825 -31.64944 -30.69581 -28.65426 -27.78327 -27.59448 -26.68122 -25.84208 -23.79052 -23.09240 -21.84742 -21.27921 -19.43490 -18.55763 -18.16602 -17.24119 -17.11667 -16.79634 -15.83255 -15.41395 -15.29093 -14.62051 -14.29660 -14.08747 -13.89882 -13.63579 -13.54083 -13.42074 -13.35266 -12.98345 -12.81905 -12.50222 -12.41225 -12.32966 -12.04898 -11.92649 -11.81791 -11.74337 -11.49927 -11.34426 -11.11847 -10.95104 -10.85656 -10.51756 -10.42542 -10.20075 -10.01800 -9.84639 -9.53632 -9.48494 -9.19527 -8.96556 -8.65572 -8.35192 -6.89633 -5.71699 -3.00380 0.91253 1.19491 2.77273 3.24262 3.45066 3.50049 3.52403 3.52800 3.83920 4.48509 4.51594 4.61278 4.70494 5.01189 5.02359 5.14263 5.18029 5.22658 5.30305 5.37222 5.42477 5.53818 5.56203 5.60789 5.66227 5.74769 5.77103 5.82721 5.85434 5.94805 5.95815 5.99820 6.01854 6.14067 6.25025 6.29650 6.33643 6.38151 6.46116 6.53685 6.58978 6.68314 6.87790 7.00996 7.72504 7.73080 7.85766 8.06033 8.36995 8.45837 9.58256 10.15299 10.50090 11.50004 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.008785 B = 0.006038 C = 0.004146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3186.337073 B = 4635.976594 C = 6751.784102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.166 3.834 3 C -0.194 4.194 4 C 0.005 3.995 5 C -0.120 4.120 6 C -0.195 4.195 7 C 0.600 3.400 8 O -0.552 6.552 9 N -0.596 5.596 10 C 0.072 3.928 11 C 0.176 3.824 12 H 0.067 0.933 13 N -0.711 5.711 14 C -0.248 4.248 15 H 0.067 0.933 16 C -0.004 4.004 17 N -0.921 5.921 18 Si 0.902 3.098 19 H -0.291 1.291 20 H -0.292 1.292 21 H -0.283 1.283 22 C -0.088 4.088 23 C -0.128 4.128 24 C -0.131 4.131 25 C 0.115 3.885 26 C 0.371 3.629 27 O -0.453 6.453 28 N -0.503 5.503 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.076 0.924 32 H 0.140 0.860 33 H 0.082 0.918 34 H 0.077 0.923 35 H 0.073 0.927 36 H 0.056 0.944 37 H 0.082 0.918 38 H 0.392 0.608 39 H 0.254 0.746 40 H 0.070 0.930 41 H 0.042 0.958 42 H 0.060 0.940 43 H 0.052 0.948 44 H 0.051 0.949 45 H 0.062 0.938 46 H 0.078 0.922 47 H 0.067 0.933 48 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.584 14.854 6.662 16.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.028 3.972 3 C -0.214 4.214 4 C -0.003 4.003 5 C -0.176 4.176 6 C -0.201 4.201 7 C 0.387 3.613 8 O -0.431 6.431 9 N -0.327 5.327 10 C -0.054 4.054 11 C 0.063 3.937 12 H 0.085 0.915 13 N -0.353 5.353 14 C -0.379 4.379 15 H 0.085 0.915 16 C -0.201 4.201 17 N -0.568 5.568 18 Si 0.733 3.267 19 H -0.218 1.218 20 H -0.218 1.218 21 H -0.209 1.209 22 C -0.089 4.089 23 C -0.185 4.185 24 C -0.188 4.188 25 C -0.008 4.008 26 C 0.191 3.809 27 O -0.259 6.259 28 N -0.224 5.224 29 H 0.101 0.899 30 H 0.098 0.902 31 H 0.095 0.905 32 H 0.158 0.842 33 H 0.100 0.900 34 H 0.096 0.904 35 H 0.092 0.908 36 H 0.074 0.926 37 H 0.101 0.899 38 H 0.230 0.770 39 H 0.064 0.936 40 H 0.089 0.911 41 H 0.061 0.939 42 H 0.079 0.921 43 H 0.071 0.929 44 H 0.070 0.930 45 H 0.081 0.919 46 H 0.096 0.904 47 H 0.085 0.915 48 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges -0.865 14.015 6.565 15.501 hybrid contribution -0.292 0.041 -0.186 0.348 sum -1.157 14.056 6.380 15.479 Atomic orbital electron populations 1.20777 0.88465 1.03510 1.03515 1.21148 0.96887 0.87205 0.91988 1.21661 0.93538 0.99383 1.06865 1.20164 0.93665 0.94006 0.92423 1.20885 1.00247 0.93240 1.03273 1.20778 0.94703 0.94166 1.10476 1.17278 0.85758 0.75754 0.82495 1.90768 1.69530 1.52166 1.30659 1.48780 1.07746 1.70288 1.05915 1.23625 1.01236 0.99500 0.81020 1.21143 0.89101 0.87742 0.95747 0.91486 1.42682 1.51705 1.09924 1.30982 1.19171 1.18368 0.97355 1.02992 0.91475 1.24689 1.00450 0.96672 0.98291 1.69654 1.46881 1.06116 1.34188 0.86289 0.80916 0.77886 0.81629 1.21808 1.21823 1.20914 1.21790 0.96570 0.95890 0.94696 1.21663 1.00014 0.95207 1.01628 1.21781 0.96888 1.00694 0.99473 1.22459 0.80770 0.98864 0.98669 1.19075 0.86159 0.84900 0.90717 1.84964 1.76239 1.31836 1.32902 1.67104 1.09394 1.30131 1.15743 0.89922 0.90209 0.90520 0.84212 0.89991 0.90433 0.90765 0.92580 0.89935 0.77030 0.93573 0.91092 0.93944 0.92140 0.92861 0.92970 0.91888 0.90357 0.91467 0.74326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.07 10.16 36.01 0.37 -0.71 16 2 C 0.17 2.35 6.78 -82.53 -0.56 1.79 16 3 C -0.19 -2.42 9.41 -39.50 -0.37 -2.79 16 4 C 0.01 0.08 5.95 -103.93 -0.62 -0.54 16 5 C -0.12 -1.32 9.69 36.01 0.35 -0.97 16 6 C -0.19 -3.39 4.56 -104.69 -0.48 -3.86 16 7 C 0.60 11.06 5.52 -12.47 -0.07 10.99 16 8 O -0.55 -11.32 17.37 5.28 0.09 -11.23 16 9 N -0.60 -10.34 3.32 -170.53 -0.57 -10.90 16 10 C 0.07 1.28 6.62 -2.41 -0.02 1.27 16 11 C 0.18 3.34 3.35 -66.53 -0.22 3.11 16 12 H 0.07 1.25 7.66 -51.93 -0.40 0.85 16 13 N -0.71 -17.22 4.57 -52.07 -0.24 -17.46 16 14 C -0.25 -6.74 9.96 -15.06 -0.15 -6.89 16 15 H 0.07 1.77 7.83 -52.49 -0.41 1.36 16 16 C 0.00 -0.11 5.50 -17.43 -0.10 -0.21 16 17 N -0.92 -27.82 13.06 55.49 0.72 -27.09 16 18 Si 0.90 22.60 29.55 -169.99 -5.02 17.57 16 19 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 20 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 21 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 22 C -0.09 -1.40 1.03 -153.11 -0.16 -1.56 16 23 C -0.13 -2.26 7.09 37.16 0.26 -2.00 16 24 C -0.13 -1.69 8.26 37.16 0.31 -1.39 16 25 C 0.11 1.77 6.14 -2.41 -0.01 1.75 16 26 C 0.37 7.03 7.77 -16.61 -0.13 6.90 16 27 O -0.45 -9.12 13.01 -17.95 -0.23 -9.35 16 28 N -0.50 -9.06 10.28 -9.21 -0.09 -9.15 16 29 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.08 0.55 8.07 -51.92 -0.42 0.13 16 32 H 0.14 1.22 8.06 -52.49 -0.42 0.79 16 33 H 0.08 0.82 8.14 -51.92 -0.42 0.40 16 34 H 0.08 0.64 8.10 -51.93 -0.42 0.22 16 35 H 0.07 0.92 7.19 -51.93 -0.37 0.55 16 36 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.08 1.74 7.35 -51.93 -0.38 1.36 16 38 H 0.39 10.28 5.11 -40.82 -0.21 10.08 16 39 H 0.25 7.52 8.31 -40.82 -0.34 7.18 16 40 H 0.07 1.39 7.76 -51.93 -0.40 0.99 16 41 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.06 1.24 6.98 -51.93 -0.36 0.88 16 43 H 0.05 0.61 8.10 -51.92 -0.42 0.19 16 44 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 46 H 0.08 1.25 7.60 -51.93 -0.39 0.86 16 47 H 0.07 0.87 7.84 -51.93 -0.41 0.47 16 48 H 0.40 6.07 9.06 45.56 0.41 6.48 16 LS Contribution 392.28 15.07 5.91 5.91 Total: -1.00 -34.65 392.28 -7.73 -42.38 By element: Atomic # 1 Polarization: 21.12 SS G_CDS: -6.70 Total: 14.41 kcal Atomic # 6 Polarization: 6.51 SS G_CDS: -1.60 Total: 4.91 kcal Atomic # 7 Polarization: -64.43 SS G_CDS: -0.17 Total: -64.61 kcal Atomic # 8 Polarization: -20.44 SS G_CDS: -0.14 Total: -20.58 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -5.02 Total: 17.57 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -34.65 -7.73 -42.38 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996115306.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.397 kcal (2) G-P(sol) polarization free energy of solvation -34.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds