Wall clock time and date at job start Tue Mar 31 2020 18:07:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.40198 * 120.36582 * 2 1 4 4 C 1.35355 * 119.95095 * 179.97438 * 3 2 1 5 5 N 1.35766 * 120.70007 * 0.02562 * 4 3 2 6 6 C 1.46499 * 119.62499 * 179.97438 * 5 4 3 7 7 C 1.50699 * 109.47047 * 89.99694 * 6 5 4 8 8 O 1.21280 * 120.00226 * 0.02562 * 7 6 5 9 9 N 1.34774 * 119.99868 * 180.02562 * 7 6 5 10 10 C 1.47422 * 125.64970 * 359.69069 * 9 7 6 11 11 C 1.55134 * 104.72531 * 155.81820 * 10 9 7 12 12 H 1.08998 * 110.94062 * 155.28347 * 11 10 9 13 13 N 1.46493 * 111.19161 * 279.19452 * 11 10 9 14 14 C 1.36936 * 120.00128 * 267.18394 * 13 11 10 15 15 H 1.08006 * 119.99671 * 359.97438 * 14 13 11 16 16 C 1.38813 * 120.00408 * 180.02562 * 14 13 11 17 17 N 1.31621 * 120.00168 * 179.97438 * 16 14 13 18 18 Si 1.86796 * 119.99709 * 0.02562 * 16 14 13 19 19 H 1.48497 * 109.47224 * 90.00005 * 18 16 14 20 20 H 1.48504 * 109.47158 * 210.00000 * 18 16 14 21 21 H 1.48500 * 109.47361 * 330.00213 * 18 16 14 22 22 C 1.55162 * 101.48172 * 37.29848 * 11 10 9 23 23 C 1.53006 * 110.71803 * 205.97331 * 22 11 10 24 24 C 1.52992 * 110.72571 * 82.69708 * 22 11 10 25 25 C 1.47029 * 125.64651 * 180.02562 * 9 7 6 26 26 C 1.34667 * 120.74977 * 359.97438 * 5 4 3 27 27 O 1.22061 * 119.98316 * 179.97438 * 26 5 4 28 28 C 1.36399 * 120.37358 * 179.97438 * 2 1 3 29 29 H 1.09000 * 109.47285 * 89.99891 * 1 2 3 30 30 H 1.08996 * 109.46920 * 209.99625 * 1 2 3 31 31 H 1.08994 * 109.47652 * 329.99810 * 1 2 3 32 32 H 1.08000 * 120.02476 * 0.02562 * 3 2 1 33 33 H 1.07993 * 119.64972 * 179.72010 * 4 3 2 34 34 H 1.08995 * 109.46903 * 209.99683 * 6 5 4 35 35 H 1.08998 * 109.47261 * 329.99699 * 6 5 4 36 36 H 1.09002 * 110.36741 * 274.74837 * 10 9 7 37 37 H 1.08997 * 110.36957 * 37.06784 * 10 9 7 38 38 H 0.97006 * 120.00342 * 87.18368 * 13 11 10 39 39 H 0.96999 * 119.99743 * 180.02562 * 17 16 14 40 40 H 1.08998 * 109.47332 * 174.97344 * 23 22 11 41 41 H 1.08999 * 109.46768 * 294.97250 * 23 22 11 42 42 H 1.09001 * 109.46943 * 54.97290 * 23 22 11 43 43 H 1.09003 * 109.47360 * 305.02511 * 24 22 11 44 44 H 1.09002 * 109.47107 * 65.01777 * 24 22 11 45 45 H 1.09001 * 109.47761 * 185.02321 * 24 22 11 46 46 H 1.08998 * 109.88118 * 300.43672 * 25 9 7 47 47 H 1.09000 * 109.88553 * 61.44601 * 25 9 7 48 48 H 1.08007 * 120.34264 * 0.03640 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2157 1.2097 0.0000 4 6 3.5692 1.1999 0.0005 5 7 4.2539 0.0275 0.0005 6 6 5.7188 0.0444 0.0005 7 6 6.2210 0.0502 1.4213 8 8 5.4330 0.0407 2.3432 9 7 7.5460 0.0660 1.6676 10 6 8.6096 0.0724 0.6468 11 6 9.8350 0.7042 1.3581 12 1 10.7656 0.3816 0.8911 13 7 9.7399 2.1659 1.3786 14 6 10.3203 2.9038 0.3816 15 1 10.8484 2.4081 -0.4195 16 6 10.2307 4.2889 0.4012 17 7 10.7889 4.9981 -0.5567 18 14 9.3190 5.1462 1.7880 19 1 10.2644 5.4397 2.8948 20 1 8.7351 6.4160 1.2859 21 1 8.2326 4.2645 2.2857 22 6 9.6982 0.1178 2.7882 23 6 10.3597 1.0381 3.8161 24 6 10.2952 -1.2892 2.8558 25 6 8.1701 0.0728 2.9989 26 6 3.6017 -1.1507 0.0005 27 8 4.2313 -2.1964 0.0001 28 6 2.1966 -1.1768 0.0005 29 1 -0.3634 0.0000 -1.0277 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3634 0.8899 0.5138 32 1 1.6821 2.1486 0.0004 33 1 4.1102 2.1345 -0.0041 34 1 6.0923 -0.8414 -0.5132 35 1 6.0718 0.9384 -0.5133 36 1 8.8359 -0.9453 0.3284 37 1 8.3121 0.6806 -0.2073 38 1 9.2659 2.6111 2.0983 39 1 10.7266 5.9660 -0.5428 40 1 10.1751 0.6543 4.8194 41 1 11.4336 1.0748 3.6329 42 1 9.9416 2.0409 3.7281 43 1 9.8320 -1.9174 2.0949 44 1 11.3695 -1.2370 2.6790 45 1 10.1095 -1.7158 3.8415 46 1 7.8466 0.9525 3.5554 47 1 7.8947 -0.8312 3.5420 48 1 1.6683 -2.1188 0.0004 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996369617.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:07:33 Heat of formation + Delta-G solvation = -16.143269 kcal Electronic energy + Delta-G solvation = -29651.670979 eV Core-core repulsion = 25707.661794 eV Total energy + Delta-G solvation = -3944.009186 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 2.53 seconds Orbital eigenvalues (eV) -41.53501 -40.03024 -38.07494 -37.05211 -35.30232 -34.12204 -33.44054 -31.18217 -30.65180 -29.56824 -28.45230 -27.67607 -26.91842 -25.46499 -23.78258 -23.73958 -21.83076 -21.46636 -19.48914 -19.13165 -17.76104 -17.61731 -17.42035 -16.96792 -16.13451 -15.94444 -15.56527 -15.03609 -14.57141 -14.49951 -14.30619 -14.08253 -13.89870 -13.88085 -13.56078 -13.27393 -12.87060 -12.79232 -12.55845 -12.50620 -12.41619 -12.24286 -12.11303 -11.83832 -11.80195 -11.75722 -11.59052 -11.37966 -11.09539 -10.69940 -10.64274 -10.35731 -10.25450 -10.04931 -9.97505 -9.71060 -9.58025 -9.15697 -8.45748 -8.03206 -7.44409 -5.93246 -3.30294 0.74361 1.82466 2.40742 2.66993 3.16457 3.24900 3.28603 3.34578 3.63969 4.42677 4.43118 4.43976 4.49506 4.64851 4.78056 4.86153 4.90131 4.94529 5.08054 5.10012 5.19749 5.25537 5.29213 5.39452 5.40564 5.48131 5.58196 5.58972 5.73258 5.78894 5.84029 5.86031 5.95592 5.96505 6.00334 6.08371 6.14725 6.17252 6.25371 6.35398 6.41049 6.45286 6.56249 6.62492 7.01933 7.64260 7.81448 8.00961 8.20792 8.25855 9.02508 9.75122 9.93926 11.24288 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.012291 B = 0.003681 C = 0.003126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2277.524588 B = 7605.537779 C = 8955.168938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.016 3.984 3 C -0.234 4.234 4 C 0.151 3.849 5 N -0.479 5.479 6 C 0.074 3.926 7 C 0.518 3.482 8 O -0.542 6.542 9 N -0.600 5.600 10 C 0.063 3.937 11 C 0.185 3.815 12 H 0.086 0.914 13 N -0.733 5.733 14 C -0.251 4.251 15 H 0.094 0.906 16 C 0.012 3.988 17 N -0.928 5.928 18 Si 0.877 3.123 19 H -0.282 1.282 20 H -0.290 1.290 21 H -0.278 1.278 22 C -0.092 4.092 23 C -0.127 4.127 24 C -0.132 4.132 25 C 0.122 3.878 26 C 0.522 3.478 27 O -0.555 6.555 28 C -0.252 4.252 29 H 0.080 0.920 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.145 0.855 33 H 0.162 0.838 34 H 0.129 0.871 35 H 0.126 0.874 36 H 0.065 0.935 37 H 0.083 0.917 38 H 0.364 0.636 39 H 0.261 0.739 40 H 0.048 0.952 41 H 0.064 0.936 42 H 0.060 0.940 43 H 0.056 0.944 44 H 0.062 0.938 45 H 0.054 0.946 46 H 0.064 0.936 47 H 0.064 0.936 48 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.120 -9.328 1.891 16.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.013 3.987 3 C -0.257 4.257 4 C 0.023 3.977 5 N -0.189 5.189 6 C -0.051 4.051 7 C 0.304 3.696 8 O -0.420 6.420 9 N -0.333 5.333 10 C -0.063 4.063 11 C 0.073 3.927 12 H 0.104 0.896 13 N -0.375 5.375 14 C -0.381 4.381 15 H 0.111 0.889 16 C -0.184 4.184 17 N -0.574 5.574 18 Si 0.707 3.293 19 H -0.208 1.208 20 H -0.216 1.216 21 H -0.205 1.205 22 C -0.094 4.094 23 C -0.185 4.185 24 C -0.189 4.189 25 C -0.001 4.001 26 C 0.325 3.675 27 O -0.438 6.438 28 C -0.273 4.273 29 H 0.098 0.902 30 H 0.091 0.909 31 H 0.092 0.908 32 H 0.163 0.837 33 H 0.180 0.820 34 H 0.147 0.853 35 H 0.143 0.857 36 H 0.084 0.916 37 H 0.102 0.898 38 H 0.198 0.802 39 H 0.071 0.929 40 H 0.067 0.933 41 H 0.083 0.917 42 H 0.079 0.921 43 H 0.075 0.925 44 H 0.081 0.919 45 H 0.073 0.927 46 H 0.082 0.918 47 H 0.082 0.918 48 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -13.033 -9.893 2.145 16.503 hybrid contribution -0.651 0.956 0.930 1.484 sum -13.685 -8.937 3.075 16.631 Atomic orbital electron populations 1.20913 0.90453 1.03472 1.02983 1.20190 0.96671 0.92692 0.89196 1.20502 0.92290 0.98899 1.14050 1.21980 0.93668 0.89692 0.92331 1.45076 1.07411 1.07264 1.59163 1.21801 0.79143 1.07578 0.96562 1.20177 0.81391 0.77051 0.90936 1.90714 1.54629 1.50755 1.45903 1.48283 1.04530 1.71595 1.08909 1.23553 0.89911 1.00405 0.92397 1.21352 0.95164 0.84738 0.91450 0.89643 1.42738 1.65342 1.00185 1.29187 1.19058 1.27836 0.88895 1.02276 0.88871 1.24639 1.00099 0.96084 0.97611 1.69687 1.48511 1.05796 1.33431 0.86683 0.80069 0.79588 0.82945 1.20813 1.21596 1.20456 1.21972 0.93030 0.96458 0.97921 1.21646 1.01211 0.99046 0.96582 1.21755 1.00943 0.94629 1.01613 1.22016 0.92167 1.01472 0.84423 1.17072 0.89329 0.82437 0.78659 1.90937 1.69210 1.30311 1.53330 1.21873 0.92257 0.99446 1.13771 0.90158 0.90915 0.90798 0.83741 0.82027 0.85336 0.85659 0.91642 0.89816 0.80213 0.92874 0.93290 0.91655 0.92112 0.92488 0.91940 0.92667 0.91776 0.91819 0.83693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.83 10.03 36.00 0.36 -0.47 16 2 C 0.02 0.17 5.89 -104.55 -0.62 -0.45 16 3 C -0.23 -2.32 9.71 -39.87 -0.39 -2.71 16 4 C 0.15 1.72 10.28 -16.84 -0.17 1.54 16 5 N -0.48 -6.79 2.07 -121.07 -0.25 -7.04 16 6 C 0.07 1.03 4.82 -5.20 -0.03 1.01 16 7 C 0.52 8.82 7.91 -10.99 -0.09 8.73 16 8 O -0.54 -11.03 16.76 5.56 0.09 -10.93 16 9 N -0.60 -9.60 3.32 -170.37 -0.57 -10.17 16 10 C 0.06 0.94 6.08 -2.41 -0.01 0.92 16 11 C 0.19 3.04 2.96 -65.66 -0.19 2.84 16 12 H 0.09 1.40 7.99 -51.93 -0.41 0.98 16 13 N -0.73 -15.22 4.37 -51.23 -0.22 -15.45 16 14 C -0.25 -6.32 10.44 -15.06 -0.16 -6.48 16 15 H 0.09 2.50 8.06 -52.48 -0.42 2.08 16 16 C 0.01 0.33 5.50 -17.43 -0.10 0.24 16 17 N -0.93 -27.25 13.97 55.49 0.78 -26.47 16 18 Si 0.88 20.83 27.74 -169.99 -4.71 16.11 16 19 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 20 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 21 H -0.28 -6.35 6.52 56.52 0.37 -5.98 16 22 C -0.09 -1.29 0.80 -152.67 -0.12 -1.42 16 23 C -0.13 -1.80 8.16 37.16 0.30 -1.50 16 24 C -0.13 -1.52 8.44 37.15 0.31 -1.20 16 25 C 0.12 1.88 6.03 -3.06 -0.02 1.86 16 26 C 0.52 8.42 7.40 -15.44 -0.11 8.31 16 27 O -0.56 -10.79 16.64 4.86 0.08 -10.71 16 28 C -0.25 -3.28 9.65 -39.38 -0.38 -3.66 16 29 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.07 0.46 8.09 -51.93 -0.42 0.04 16 31 H 0.07 0.42 8.10 -51.93 -0.42 0.00 16 32 H 0.14 1.02 8.06 -52.49 -0.42 0.60 16 33 H 0.16 1.46 8.03 -52.49 -0.42 1.04 16 34 H 0.13 1.73 7.39 -51.93 -0.38 1.35 16 35 H 0.13 1.42 7.72 -51.93 -0.40 1.02 16 36 H 0.07 0.84 7.70 -51.93 -0.40 0.44 16 37 H 0.08 1.28 7.48 -51.93 -0.39 0.89 16 38 H 0.36 7.78 4.18 -40.82 -0.17 7.61 16 39 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 40 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 42 H 0.06 0.99 6.34 -51.93 -0.33 0.66 16 43 H 0.06 0.64 7.42 -51.93 -0.39 0.26 16 44 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 45 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 46 H 0.06 1.07 7.82 -51.93 -0.41 0.67 16 47 H 0.06 0.96 7.85 -51.93 -0.41 0.55 16 48 H 0.15 1.69 8.06 -52.48 -0.42 1.27 16 LS Contribution 389.03 15.07 5.86 5.86 Total: -1.00 -34.70 389.03 -7.85 -42.55 By element: Atomic # 1 Polarization: 16.17 SS G_CDS: -7.50 Total: 8.68 kcal Atomic # 6 Polarization: 8.97 SS G_CDS: -1.41 Total: 7.57 kcal Atomic # 7 Polarization: -58.86 SS G_CDS: -0.27 Total: -59.12 kcal Atomic # 8 Polarization: -21.82 SS G_CDS: 0.17 Total: -21.64 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -4.71 Total: 16.11 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -34.70 -7.85 -42.55 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996369617.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.404 kcal (2) G-P(sol) polarization free energy of solvation -34.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.53 seconds