Wall clock time and date at job start Tue Mar 31 2020 18:07:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.40198 * 120.36582 * 2 1 4 4 C 1.35355 * 119.95095 * 179.97438 * 3 2 1 5 5 N 1.35766 * 120.70007 * 0.02562 * 4 3 2 6 6 C 1.46499 * 119.62499 * 179.97438 * 5 4 3 7 7 C 1.50699 * 109.47047 * 89.99694 * 6 5 4 8 8 O 1.21280 * 120.00226 * 0.02562 * 7 6 5 9 9 N 1.34774 * 119.99868 * 180.02562 * 7 6 5 10 10 C 1.47422 * 125.64970 * 359.69069 * 9 7 6 11 11 C 1.55134 * 104.72531 * 155.81820 * 10 9 7 12 12 H 1.08998 * 110.94062 * 155.28347 * 11 10 9 13 13 N 1.46493 * 111.19161 * 279.19452 * 11 10 9 14 14 C 1.36936 * 120.00128 * 267.18394 * 13 11 10 15 15 H 1.08006 * 119.99671 * 359.97438 * 14 13 11 16 16 C 1.38813 * 120.00408 * 180.02562 * 14 13 11 17 17 N 1.31621 * 120.00168 * 179.97438 * 16 14 13 18 18 Si 1.86796 * 119.99709 * 0.02562 * 16 14 13 19 19 H 1.48497 * 109.47224 * 90.00005 * 18 16 14 20 20 H 1.48504 * 109.47158 * 210.00000 * 18 16 14 21 21 H 1.48500 * 109.47361 * 330.00213 * 18 16 14 22 22 C 1.55162 * 101.48172 * 37.29848 * 11 10 9 23 23 C 1.53006 * 110.71803 * 205.97331 * 22 11 10 24 24 C 1.52992 * 110.72571 * 82.69708 * 22 11 10 25 25 C 1.47029 * 125.64651 * 180.02562 * 9 7 6 26 26 C 1.34667 * 120.74977 * 359.97438 * 5 4 3 27 27 O 1.22061 * 119.98316 * 179.97438 * 26 5 4 28 28 C 1.36399 * 120.37358 * 179.97438 * 2 1 3 29 29 H 1.09000 * 109.47285 * 89.99891 * 1 2 3 30 30 H 1.08996 * 109.46920 * 209.99625 * 1 2 3 31 31 H 1.08994 * 109.47652 * 329.99810 * 1 2 3 32 32 H 1.08000 * 120.02476 * 0.02562 * 3 2 1 33 33 H 1.07993 * 119.64972 * 179.72010 * 4 3 2 34 34 H 1.08995 * 109.46903 * 209.99683 * 6 5 4 35 35 H 1.08998 * 109.47261 * 329.99699 * 6 5 4 36 36 H 1.09002 * 110.36741 * 274.74837 * 10 9 7 37 37 H 1.08997 * 110.36957 * 37.06784 * 10 9 7 38 38 H 0.97006 * 120.00342 * 87.18368 * 13 11 10 39 39 H 0.96999 * 119.99743 * 180.02562 * 17 16 14 40 40 H 1.08998 * 109.47332 * 174.97344 * 23 22 11 41 41 H 1.08999 * 109.46768 * 294.97250 * 23 22 11 42 42 H 1.09001 * 109.46943 * 54.97290 * 23 22 11 43 43 H 1.09003 * 109.47360 * 305.02511 * 24 22 11 44 44 H 1.09002 * 109.47107 * 65.01777 * 24 22 11 45 45 H 1.09001 * 109.47761 * 185.02321 * 24 22 11 46 46 H 1.08998 * 109.88118 * 300.43672 * 25 9 7 47 47 H 1.09000 * 109.88553 * 61.44601 * 25 9 7 48 48 H 1.08007 * 120.34264 * 0.03640 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2157 1.2097 0.0000 4 6 3.5692 1.1999 0.0005 5 7 4.2539 0.0275 0.0005 6 6 5.7188 0.0444 0.0005 7 6 6.2210 0.0502 1.4213 8 8 5.4330 0.0407 2.3432 9 7 7.5460 0.0660 1.6676 10 6 8.6096 0.0724 0.6468 11 6 9.8350 0.7042 1.3581 12 1 10.7656 0.3816 0.8911 13 7 9.7399 2.1659 1.3786 14 6 10.3203 2.9038 0.3816 15 1 10.8484 2.4081 -0.4195 16 6 10.2307 4.2889 0.4012 17 7 10.7889 4.9981 -0.5567 18 14 9.3190 5.1462 1.7880 19 1 10.2644 5.4397 2.8948 20 1 8.7351 6.4160 1.2859 21 1 8.2326 4.2645 2.2857 22 6 9.6982 0.1178 2.7882 23 6 10.3597 1.0381 3.8161 24 6 10.2952 -1.2892 2.8558 25 6 8.1701 0.0728 2.9989 26 6 3.6017 -1.1507 0.0005 27 8 4.2313 -2.1964 0.0001 28 6 2.1966 -1.1768 0.0005 29 1 -0.3634 0.0000 -1.0277 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3634 0.8899 0.5138 32 1 1.6821 2.1486 0.0004 33 1 4.1102 2.1345 -0.0041 34 1 6.0923 -0.8414 -0.5132 35 1 6.0718 0.9384 -0.5133 36 1 8.8359 -0.9453 0.3284 37 1 8.3121 0.6806 -0.2073 38 1 9.2659 2.6111 2.0983 39 1 10.7266 5.9660 -0.5428 40 1 10.1751 0.6543 4.8194 41 1 11.4336 1.0748 3.6329 42 1 9.9416 2.0409 3.7281 43 1 9.8320 -1.9174 2.0949 44 1 11.3695 -1.2370 2.6790 45 1 10.1095 -1.7158 3.8415 46 1 7.8466 0.9525 3.5554 47 1 7.8947 -0.8312 3.5420 48 1 1.6683 -2.1188 0.0004 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000996369617.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:07:32 Heat of formation + Delta-G solvation = -38.236317 kcal Electronic energy + Delta-G solvation = -29652.629006 eV Core-core repulsion = 25707.661794 eV Total energy + Delta-G solvation = -3944.967212 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.54 seconds Orbital eigenvalues (eV) -42.59786 -41.29303 -39.40074 -38.14382 -36.28265 -35.82794 -34.76279 -33.02862 -31.54713 -30.56345 -29.83633 -28.62765 -28.07876 -26.58275 -25.42393 -24.71213 -23.12256 -22.60290 -20.73979 -20.53800 -19.42121 -18.62919 -18.60737 -18.13942 -17.34962 -17.03456 -16.83862 -16.53004 -16.17674 -15.71524 -15.32725 -15.21680 -15.07836 -14.98691 -14.74669 -14.41286 -14.18523 -13.94309 -13.70250 -13.66434 -13.53178 -13.38336 -13.15895 -13.09132 -12.93077 -12.87779 -12.84644 -12.67366 -12.49583 -12.25861 -11.93346 -11.90252 -11.60561 -11.40970 -11.30690 -11.13549 -11.00810 -10.62782 -9.84355 -9.25619 -9.04547 -8.00632 -5.32879 -0.17307 0.86010 1.35688 1.36205 1.36336 1.37587 1.43500 1.98081 2.46771 2.61718 3.22295 3.28527 3.50098 3.53632 3.62972 3.65824 3.75632 3.81604 3.95228 4.00311 4.08684 4.23509 4.27961 4.33422 4.38014 4.53220 4.63528 4.70904 4.74453 4.82796 4.83260 4.85599 4.86403 4.92183 5.00796 5.05458 5.07400 5.19183 5.23664 5.25274 5.37196 5.44053 5.49009 5.60831 5.81499 6.00987 6.23652 6.35096 6.86353 6.93873 7.08381 7.84319 8.01994 9.20322 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.012291 B = 0.003681 C = 0.003126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2277.524588 B = 7605.537779 C = 8955.168938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.033 3.967 3 C -0.224 4.224 4 C 0.130 3.870 5 N -0.483 5.483 6 C 0.078 3.922 7 C 0.512 3.488 8 O -0.581 6.581 9 N -0.601 5.601 10 C 0.070 3.930 11 C 0.174 3.826 12 H 0.091 0.909 13 N -0.736 5.736 14 C -0.219 4.219 15 H 0.072 0.928 16 C -0.051 4.051 17 N -0.978 5.978 18 Si 0.936 3.064 19 H -0.282 1.282 20 H -0.299 1.299 21 H -0.265 1.265 22 C -0.079 4.079 23 C -0.127 4.127 24 C -0.127 4.127 25 C 0.119 3.881 26 C 0.503 3.497 27 O -0.609 6.609 28 C -0.285 4.285 29 H 0.099 0.901 30 H 0.076 0.924 31 H 0.093 0.907 32 H 0.182 0.818 33 H 0.186 0.814 34 H 0.129 0.871 35 H 0.151 0.849 36 H 0.094 0.906 37 H 0.080 0.920 38 H 0.362 0.638 39 H 0.256 0.744 40 H 0.071 0.929 41 H 0.065 0.935 42 H 0.037 0.963 43 H 0.060 0.940 44 H 0.072 0.928 45 H 0.069 0.931 46 H 0.049 0.951 47 H 0.069 0.931 48 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.660 -9.455 2.634 17.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.029 3.971 3 C -0.246 4.246 4 C 0.004 3.996 5 N -0.192 5.192 6 C -0.047 4.047 7 C 0.300 3.700 8 O -0.462 6.462 9 N -0.333 5.333 10 C -0.055 4.055 11 C 0.064 3.936 12 H 0.108 0.892 13 N -0.377 5.377 14 C -0.349 4.349 15 H 0.090 0.910 16 C -0.244 4.244 17 N -0.628 5.628 18 Si 0.766 3.234 19 H -0.208 1.208 20 H -0.226 1.226 21 H -0.191 1.191 22 C -0.080 4.080 23 C -0.185 4.185 24 C -0.184 4.184 25 C -0.003 4.003 26 C 0.309 3.691 27 O -0.497 6.497 28 C -0.306 4.306 29 H 0.118 0.882 30 H 0.095 0.905 31 H 0.112 0.888 32 H 0.199 0.801 33 H 0.203 0.797 34 H 0.147 0.853 35 H 0.169 0.831 36 H 0.112 0.888 37 H 0.098 0.902 38 H 0.196 0.804 39 H 0.065 0.935 40 H 0.090 0.910 41 H 0.084 0.916 42 H 0.056 0.944 43 H 0.079 0.921 44 H 0.091 0.909 45 H 0.088 0.912 46 H 0.067 0.933 47 H 0.087 0.913 48 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -14.588 -10.046 2.907 17.950 hybrid contribution -0.205 0.957 0.698 1.202 sum -14.794 -9.089 3.605 17.733 Atomic orbital electron populations 1.21033 0.87486 1.04694 1.04483 1.20649 0.98734 0.91783 0.85904 1.21047 0.91893 1.00204 1.11492 1.22574 0.94721 0.89539 0.92724 1.45099 1.07502 1.07715 1.58872 1.21850 0.79467 1.08730 0.94693 1.20706 0.81318 0.76211 0.91772 1.90683 1.55546 1.52648 1.47301 1.48390 1.04588 1.70900 1.09404 1.23491 0.88535 1.01778 0.91662 1.21616 0.95985 0.82376 0.93629 0.89155 1.42724 1.64993 1.01946 1.28050 1.19047 1.25309 0.88880 1.01709 0.91020 1.25240 1.02115 0.97072 0.99924 1.69836 1.51428 1.05671 1.35896 0.85707 0.79212 0.78227 0.80274 1.20818 1.22565 1.19063 1.21922 0.92198 0.97924 0.96003 1.21643 1.00987 0.97860 0.97960 1.21735 1.01388 0.92599 1.02713 1.22088 0.92988 1.01023 0.84241 1.17584 0.90465 0.82366 0.78700 1.90880 1.70249 1.31973 1.56587 1.21926 0.91140 1.00978 1.16597 0.88244 0.90470 0.88840 0.80091 0.79735 0.85318 0.83140 0.88839 0.90210 0.80379 0.93482 0.91032 0.91556 0.94432 0.92090 0.90879 0.91217 0.93303 0.91293 0.83425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.23 10.03 71.23 0.71 -0.52 16 2 C 0.03 0.62 5.89 -19.82 -0.12 0.50 16 3 C -0.22 -3.77 9.71 22.08 0.21 -3.56 16 4 C 0.13 2.73 10.28 83.42 0.86 3.59 16 5 N -0.48 -13.49 2.07 -655.07 -1.36 -14.84 16 6 C 0.08 2.11 4.82 85.63 0.41 2.53 16 7 C 0.51 17.19 7.91 87.66 0.69 17.88 16 8 O -0.58 -23.69 16.76 -3.03 -0.05 -23.74 16 9 N -0.60 -18.52 3.32 -811.33 -2.70 -21.21 16 10 C 0.07 1.96 6.08 86.93 0.53 2.49 16 11 C 0.17 5.41 2.96 46.47 0.14 5.55 16 12 H 0.09 2.77 7.99 -2.39 -0.02 2.76 16 13 N -0.74 -29.74 4.37 -316.01 -1.38 -31.12 16 14 C -0.22 -10.96 10.44 84.03 0.88 -10.08 16 15 H 0.07 3.88 8.06 -2.91 -0.02 3.86 16 16 C -0.05 -2.80 5.50 84.86 0.47 -2.33 16 17 N -0.98 -58.57 13.97 21.65 0.30 -58.27 16 18 Si 0.94 43.24 27.74 68.60 1.90 45.14 16 19 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 20 H -0.30 -14.14 7.11 99.48 0.71 -13.43 16 21 H -0.27 -11.46 6.52 99.48 0.65 -10.81 16 22 C -0.08 -2.05 0.80 -50.99 -0.04 -2.09 16 23 C -0.13 -3.35 8.16 71.98 0.59 -2.76 16 24 C -0.13 -2.53 8.44 71.98 0.61 -1.93 16 25 C 0.12 3.51 6.03 86.73 0.52 4.04 16 26 C 0.50 16.59 7.40 84.82 0.63 17.22 16 27 O -0.61 -24.79 16.64 -5.51 -0.09 -24.88 16 28 C -0.29 -7.40 9.65 22.40 0.22 -7.19 16 29 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.08 0.77 8.09 -2.39 -0.02 0.75 16 31 H 0.09 0.65 8.10 -2.39 -0.02 0.63 16 32 H 0.18 1.70 8.06 -2.91 -0.02 1.68 16 33 H 0.19 2.87 8.03 -2.91 -0.02 2.85 16 34 H 0.13 3.49 7.39 -2.39 -0.02 3.47 16 35 H 0.15 3.21 7.72 -2.39 -0.02 3.19 16 36 H 0.09 2.15 7.70 -2.39 -0.02 2.13 16 37 H 0.08 2.32 7.48 -2.39 -0.02 2.30 16 38 H 0.36 15.03 4.18 -92.70 -0.39 14.64 16 39 H 0.26 14.83 8.31 -92.71 -0.77 14.06 16 40 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 41 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 42 H 0.04 1.16 6.34 -2.39 -0.02 1.15 16 43 H 0.06 1.19 7.42 -2.39 -0.02 1.17 16 44 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 45 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 46 H 0.05 1.59 7.82 -2.39 -0.02 1.57 16 47 H 0.07 1.97 7.85 -2.39 -0.02 1.95 16 48 H 0.15 3.55 8.06 -2.91 -0.02 3.53 16 Total: -1.00 -78.30 389.03 4.45 -73.86 By element: Atomic # 1 Polarization: 31.22 SS G_CDS: 0.51 Total: 31.74 kcal Atomic # 6 Polarization: 16.03 SS G_CDS: 7.31 Total: 23.34 kcal Atomic # 7 Polarization: -120.31 SS G_CDS: -5.14 Total: -125.45 kcal Atomic # 8 Polarization: -48.48 SS G_CDS: -0.14 Total: -48.62 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 1.90 Total: 45.14 kcal Total: -78.30 4.45 -73.86 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996369617.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.619 kcal (2) G-P(sol) polarization free energy of solvation -78.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.54 seconds