Wall clock time and date at job start Tue Mar 31 2020 18:07:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.40193 * 120.36690 * 2 1 4 4 C 1.35351 * 119.94598 * 179.97438 * 3 2 1 5 5 N 1.35764 * 120.69947 * 359.97438 * 4 3 2 6 6 C 1.46505 * 119.61995 * 180.02562 * 5 4 3 7 7 C 1.50703 * 109.47064 * 90.00198 * 6 5 4 8 8 O 1.21278 * 119.99985 * 359.97438 * 7 6 5 9 9 N 1.34777 * 120.00161 * 180.02562 * 7 6 5 10 10 C 1.47423 * 125.64665 * 359.68696 * 9 7 6 11 11 C 1.55123 * 104.72450 * 155.81937 * 10 9 7 12 12 H 1.09002 * 111.19286 * 279.19624 * 11 10 9 13 13 N 1.46506 * 110.90753 * 155.27645 * 11 10 9 14 14 C 1.36930 * 119.99785 * 92.98040 * 13 11 10 15 15 H 1.07999 * 120.00748 * 359.97438 * 14 13 11 16 16 C 1.38817 * 119.99595 * 179.97438 * 14 13 11 17 17 N 1.31616 * 120.00342 * 0.02562 * 16 14 13 18 18 Si 1.86806 * 119.99910 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47085 * 0.02562 * 18 16 14 20 20 H 1.48498 * 109.46945 * 119.99870 * 18 16 14 21 21 H 1.48500 * 109.47084 * 240.00129 * 18 16 14 22 22 C 1.55154 * 101.48369 * 37.29852 * 11 10 9 23 23 C 1.53007 * 110.72156 * 205.97204 * 22 11 10 24 24 C 1.53001 * 110.72332 * 82.69456 * 22 11 10 25 25 C 1.47018 * 125.65319 * 180.02562 * 9 7 6 26 26 C 1.34656 * 120.75613 * 0.29634 * 5 4 3 27 27 O 1.22061 * 119.98888 * 179.70197 * 26 5 4 28 28 C 1.36404 * 120.36279 * 179.97438 * 2 1 3 29 29 H 1.09000 * 109.47344 * 89.99808 * 1 2 3 30 30 H 1.08997 * 109.47152 * 210.00164 * 1 2 3 31 31 H 1.09003 * 109.47221 * 329.99603 * 1 2 3 32 32 H 1.08002 * 120.02804 * 0.02562 * 3 2 1 33 33 H 1.07993 * 119.64776 * 179.97438 * 4 3 2 34 34 H 1.09002 * 109.47068 * 210.00166 * 6 5 4 35 35 H 1.09001 * 109.47372 * 330.00254 * 6 5 4 36 36 H 1.09003 * 110.37092 * 274.75069 * 10 9 7 37 37 H 1.08999 * 110.36866 * 37.07050 * 10 9 7 38 38 H 0.96997 * 119.99430 * 272.97491 * 13 11 10 39 39 H 0.97000 * 120.00570 * 180.02562 * 17 16 14 40 40 H 1.09000 * 109.47281 * 174.97840 * 23 22 11 41 41 H 1.08999 * 109.46817 * 294.97260 * 23 22 11 42 42 H 1.09000 * 109.46973 * 54.97390 * 23 22 11 43 43 H 1.08994 * 109.47043 * 305.02569 * 24 22 11 44 44 H 1.09000 * 109.47021 * 65.02854 * 24 22 11 45 45 H 1.08997 * 109.47272 * 185.02490 * 24 22 11 46 46 H 1.09008 * 109.87927 * 300.43574 * 25 9 7 47 47 H 1.09004 * 109.88432 * 61.44111 * 25 9 7 48 48 H 1.07991 * 120.35004 * 0.04197 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2158 1.2096 0.0000 4 6 3.5692 1.1997 0.0005 5 7 4.2538 0.0272 0.0016 6 6 5.7187 0.0441 0.0027 7 6 6.2199 0.0504 1.4239 8 8 5.4312 0.0422 2.3451 9 7 7.5447 0.0663 1.6713 10 6 8.6091 0.0721 0.6513 11 6 9.8339 0.7041 1.3632 12 1 9.7632 1.7917 1.3780 13 7 11.0847 0.2697 0.7362 14 6 11.6527 1.0257 -0.2542 15 1 11.1785 1.9420 -0.5734 16 6 12.8381 0.6143 -0.8479 17 7 13.4159 -0.5025 -0.4593 18 14 13.6126 1.6453 -2.1996 19 1 12.7728 2.8440 -2.4507 20 1 14.9712 2.0727 -1.7791 21 1 13.7099 0.8391 -3.4429 22 6 9.6961 0.1184 2.7933 23 6 10.3568 1.0391 3.8214 24 6 10.2929 -1.2887 2.8619 25 6 8.1678 0.0735 3.0028 26 6 3.6017 -1.1509 -0.0039 27 8 4.2312 -2.1967 -0.0083 28 6 2.1965 -1.1769 0.0005 29 1 -0.3634 0.0000 -1.0277 30 1 -0.3633 -0.8899 0.5138 31 1 -0.3634 0.8900 0.5139 32 1 1.6822 2.1486 0.0004 33 1 4.1103 2.1343 0.0001 34 1 6.0927 -0.8419 -0.5105 35 1 6.0722 0.9379 -0.5112 36 1 8.8357 -0.9456 0.3334 37 1 8.3123 0.6801 -0.2033 38 1 11.5105 -0.5534 1.0227 39 1 14.2444 -0.7898 -0.8740 40 1 10.1715 0.6555 4.8247 41 1 11.4308 1.0756 3.6391 42 1 9.9389 2.0418 3.7327 43 1 9.8302 -1.9171 2.1010 44 1 11.3674 -1.2366 2.6861 45 1 10.1064 -1.7149 3.8477 46 1 7.8440 0.9535 3.5588 47 1 7.8919 -0.8303 3.5462 48 1 1.6683 -2.1188 0.0003 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996369618.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:07:40 Heat of formation + Delta-G solvation = -20.045187 kcal Electronic energy + Delta-G solvation = -29133.323535 eV Core-core repulsion = 25189.145149 eV Total energy + Delta-G solvation = -3944.178386 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.64 seconds Orbital eigenvalues (eV) -41.58846 -39.96663 -38.04298 -37.10211 -35.36149 -34.24339 -33.28359 -30.91468 -30.68813 -29.62330 -27.79279 -27.53675 -27.04838 -25.45317 -23.99743 -23.84799 -21.92523 -21.49188 -19.50987 -18.71536 -17.68932 -17.61424 -17.32399 -17.00126 -16.17264 -15.88069 -15.66689 -14.85834 -14.70241 -14.41049 -14.26508 -14.08844 -13.95610 -13.74767 -13.58341 -13.15761 -12.96595 -12.87678 -12.80425 -12.50007 -12.27090 -12.10073 -12.02107 -11.86193 -11.80133 -11.60278 -11.34387 -11.09077 -10.98234 -10.64761 -10.53166 -10.30264 -10.24832 -10.02189 -9.95314 -9.77025 -9.62279 -9.08192 -8.46237 -8.08642 -7.15293 -5.91891 -3.22652 0.68336 1.76582 2.34452 2.60002 3.11621 3.34249 3.40044 3.42631 3.59047 4.32477 4.39015 4.42528 4.51386 4.58067 4.79501 4.88171 4.98152 5.01404 5.03789 5.11833 5.22981 5.24633 5.34388 5.43264 5.53644 5.54760 5.58876 5.73320 5.77353 5.81297 5.89722 5.93398 5.98589 6.08509 6.10883 6.19622 6.26416 6.27230 6.33640 6.37831 6.49271 6.58879 6.66930 6.82505 6.95940 7.56547 7.62157 7.97303 8.15362 8.26044 9.38327 9.91807 10.26900 11.30040 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.015375 B = 0.002792 C = 0.002553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1820.652864 B =10026.140311 C =10966.466714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.014 3.986 3 C -0.234 4.234 4 C 0.148 3.852 5 N -0.480 5.480 6 C 0.074 3.926 7 C 0.515 3.485 8 O -0.542 6.542 9 N -0.606 5.606 10 C 0.066 3.934 11 C 0.183 3.817 12 H 0.070 0.930 13 N -0.709 5.709 14 C -0.250 4.250 15 H 0.072 0.928 16 C -0.007 4.007 17 N -0.928 5.928 18 Si 0.907 3.093 19 H -0.280 1.280 20 H -0.291 1.291 21 H -0.291 1.291 22 C -0.087 4.087 23 C -0.128 4.128 24 C -0.135 4.135 25 C 0.122 3.878 26 C 0.521 3.479 27 O -0.550 6.550 28 C -0.248 4.248 29 H 0.080 0.920 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.144 0.856 33 H 0.161 0.839 34 H 0.131 0.869 35 H 0.122 0.878 36 H 0.074 0.926 37 H 0.070 0.930 38 H 0.390 0.610 39 H 0.257 0.743 40 H 0.049 0.951 41 H 0.068 0.932 42 H 0.052 0.948 43 H 0.055 0.945 44 H 0.073 0.927 45 H 0.049 0.951 46 H 0.065 0.935 47 H 0.064 0.936 48 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.311 5.049 2.485 21.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.010 3.990 3 C -0.257 4.257 4 C 0.021 3.979 5 N -0.190 5.190 6 C -0.051 4.051 7 C 0.301 3.699 8 O -0.420 6.420 9 N -0.340 5.340 10 C -0.060 4.060 11 C 0.070 3.930 12 H 0.088 0.912 13 N -0.350 5.350 14 C -0.381 4.381 15 H 0.090 0.910 16 C -0.204 4.204 17 N -0.575 5.575 18 Si 0.738 3.262 19 H -0.205 1.205 20 H -0.218 1.218 21 H -0.218 1.218 22 C -0.089 4.089 23 C -0.186 4.186 24 C -0.193 4.193 25 C -0.001 4.001 26 C 0.323 3.677 27 O -0.432 6.432 28 C -0.270 4.270 29 H 0.098 0.902 30 H 0.091 0.909 31 H 0.092 0.908 32 H 0.162 0.838 33 H 0.178 0.822 34 H 0.148 0.852 35 H 0.140 0.860 36 H 0.092 0.908 37 H 0.088 0.912 38 H 0.227 0.773 39 H 0.067 0.933 40 H 0.068 0.932 41 H 0.087 0.913 42 H 0.071 0.929 43 H 0.075 0.925 44 H 0.091 0.909 45 H 0.068 0.932 46 H 0.084 0.916 47 H 0.082 0.918 48 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -20.258 4.467 2.816 20.935 hybrid contribution 0.662 0.290 -0.750 1.042 sum -19.596 4.757 2.066 20.270 Atomic orbital electron populations 1.20915 0.90441 1.03489 1.02982 1.20186 0.96684 0.92689 0.89405 1.20486 0.92299 0.98861 1.14034 1.21907 0.93614 0.89572 0.92794 1.45081 1.07373 1.07279 1.59310 1.21798 0.79163 1.07555 0.96589 1.20215 0.81477 0.77265 0.90895 1.90715 1.54601 1.50755 1.45921 1.48425 1.04534 1.71527 1.09502 1.23706 0.88612 1.02282 0.91402 1.21364 0.86110 0.96762 0.88802 0.91222 1.42465 1.21861 1.27889 1.42787 1.19281 1.04027 1.03545 1.11239 0.90967 1.24766 0.97980 0.97534 1.00099 1.69657 1.20102 1.22880 1.44844 0.86128 0.79144 0.79297 0.81613 1.20491 1.21780 1.21768 1.21886 0.92210 0.97123 0.97670 1.21681 1.01693 0.98106 0.97097 1.21727 1.02214 0.94460 1.00861 1.22062 0.92326 1.01571 0.84114 1.17096 0.89349 0.82480 0.78731 1.90967 1.69147 1.30263 1.52868 1.21901 0.92242 0.99514 1.13354 0.90174 0.90884 0.90820 0.83791 0.82191 0.85159 0.86015 0.90781 0.91177 0.77273 0.93308 0.93165 0.91298 0.92859 0.92542 0.90850 0.93213 0.91626 0.91785 0.83640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.73 10.03 36.01 0.36 -0.37 16 2 C 0.01 0.13 5.89 -104.55 -0.62 -0.48 16 3 C -0.23 -1.96 9.71 -39.88 -0.39 -2.35 16 4 C 0.15 1.41 10.28 -16.84 -0.17 1.24 16 5 N -0.48 -6.23 2.07 -121.06 -0.25 -6.48 16 6 C 0.07 0.94 4.82 -5.19 -0.03 0.92 16 7 C 0.52 8.16 7.92 -10.98 -0.09 8.07 16 8 O -0.54 -10.31 16.76 5.56 0.09 -10.22 16 9 N -0.61 -9.34 3.32 -170.38 -0.57 -9.90 16 10 C 0.07 1.05 6.07 -2.41 -0.01 1.03 16 11 C 0.18 3.21 2.97 -65.66 -0.19 3.02 16 12 H 0.07 1.24 7.99 -51.93 -0.41 0.83 16 13 N -0.71 -15.76 5.15 -51.24 -0.26 -16.03 16 14 C -0.25 -6.28 9.96 -15.06 -0.15 -6.43 16 15 H 0.07 1.75 7.83 -52.49 -0.41 1.34 16 16 C -0.01 -0.18 5.50 -17.43 -0.10 -0.28 16 17 N -0.93 -26.25 13.06 55.49 0.72 -25.52 16 18 Si 0.91 21.02 29.55 -169.99 -5.02 16.00 16 19 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 20 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 21 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 22 C -0.09 -1.33 0.85 -152.67 -0.13 -1.46 16 23 C -0.13 -1.79 8.49 37.16 0.32 -1.47 16 24 C -0.14 -2.12 7.55 37.16 0.28 -1.84 16 25 C 0.12 1.83 6.04 -3.07 -0.02 1.81 16 26 C 0.52 8.11 7.40 -15.45 -0.11 8.00 16 27 O -0.55 -10.71 16.64 4.86 0.08 -10.63 16 28 C -0.25 -3.08 9.65 -39.38 -0.38 -3.46 16 29 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.07 0.41 8.09 -51.93 -0.42 -0.01 16 31 H 0.07 0.35 8.10 -51.93 -0.42 -0.08 16 32 H 0.14 0.77 8.06 -52.49 -0.42 0.35 16 33 H 0.16 0.99 8.04 -52.49 -0.42 0.57 16 34 H 0.13 1.77 7.38 -51.93 -0.38 1.38 16 35 H 0.12 1.09 7.72 -51.93 -0.40 0.69 16 36 H 0.07 1.28 7.69 -51.93 -0.40 0.88 16 37 H 0.07 1.01 7.48 -51.93 -0.39 0.62 16 38 H 0.39 9.28 5.45 -40.82 -0.22 9.05 16 39 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 40 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 42 H 0.05 0.70 8.13 -51.93 -0.42 0.27 16 43 H 0.06 0.93 7.42 -51.93 -0.39 0.54 16 44 H 0.07 1.28 6.75 -51.93 -0.35 0.93 16 45 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 46 H 0.07 0.95 7.82 -51.92 -0.41 0.54 16 47 H 0.06 0.99 7.85 -51.93 -0.41 0.58 16 48 H 0.15 1.64 8.06 -52.49 -0.42 1.22 16 LS Contribution 391.72 15.07 5.90 5.90 Total: -1.00 -33.90 391.72 -8.26 -42.16 By element: Atomic # 1 Polarization: 16.31 SS G_CDS: -7.53 Total: 8.78 kcal Atomic # 6 Polarization: 7.38 SS G_CDS: -1.43 Total: 5.95 kcal Atomic # 7 Polarization: -57.58 SS G_CDS: -0.36 Total: -57.94 kcal Atomic # 8 Polarization: -21.02 SS G_CDS: 0.17 Total: -20.85 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -33.90 -8.26 -42.16 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996369618.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.111 kcal (2) G-P(sol) polarization free energy of solvation -33.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.64 seconds