Wall clock time and date at job start Tue Mar 31 2020 17:35:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.37994 * 120.82164 * 2 1 4 4 C 1.39135 * 119.26377 * 179.97438 * 3 2 1 5 5 O 1.35497 * 119.52318 * 180.02562 * 4 3 2 6 6 N 1.32427 * 120.95027 * 359.97438 * 4 3 2 7 7 C 1.31642 * 121.80218 * 0.02562 * 6 4 3 8 8 C 1.50697 * 119.68648 * 179.97438 * 7 6 4 9 9 C 1.39556 * 120.62560 * 0.02562 * 7 6 4 10 10 C 1.47619 * 120.50377 * 179.97438 * 9 7 6 11 11 O 1.21579 * 119.99629 * 89.99741 * 10 9 7 12 12 N 1.34778 * 119.99612 * 270.00312 * 10 9 7 13 13 C 1.47018 * 125.65228 * 0.02562 * 12 10 9 14 14 C 1.54322 * 107.27356 * 181.02429 * 13 12 10 15 15 H 1.08995 * 110.72614 * 140.55565 * 14 13 12 16 16 N 1.46505 * 110.71979 * 263.82818 * 14 13 12 17 17 C 1.36933 * 119.99836 * 273.54528 * 16 14 13 18 18 H 1.08007 * 119.99973 * 359.97438 * 17 16 14 19 19 C 1.38813 * 120.00268 * 179.97438 * 17 16 14 20 20 N 1.31620 * 119.99711 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00328 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.46932 * 0.02562 * 21 19 17 23 23 H 1.48496 * 109.46765 * 120.00241 * 21 19 17 24 24 H 1.48502 * 109.46993 * 240.00404 * 21 19 17 25 25 C 1.55158 * 102.94244 * 22.19039 * 14 13 12 26 26 C 1.52991 * 111.00661 * 82.57301 * 25 14 13 27 27 C 1.53002 * 111.00523 * 206.39120 * 25 14 13 28 28 C 1.47423 * 125.64482 * 179.71324 * 12 10 9 29 29 H 1.09000 * 109.47259 * 89.99663 * 1 2 3 30 30 H 1.09003 * 109.47107 * 210.00162 * 1 2 3 31 31 H 1.09001 * 109.47015 * 329.99588 * 1 2 3 32 32 H 1.07994 * 120.36914 * 0.27897 * 3 2 1 33 33 H 0.96703 * 113.99869 * 90.00133 * 5 4 3 34 34 H 1.09004 * 109.47317 * 90.00529 * 8 7 6 35 35 H 1.09006 * 109.47222 * 209.99792 * 8 7 6 36 36 H 1.08996 * 109.47775 * 329.99985 * 8 7 6 37 37 H 1.09010 * 109.87998 * 300.43836 * 13 12 10 38 38 H 1.08998 * 109.88366 * 61.44748 * 13 12 10 39 39 H 0.96993 * 119.99883 * 93.54268 * 16 14 13 40 40 H 0.96998 * 120.00176 * 179.97438 * 20 19 17 41 41 H 1.09003 * 109.47084 * 60.00160 * 26 25 14 42 42 H 1.09000 * 109.47546 * 179.97438 * 26 25 14 43 43 H 1.09003 * 109.47412 * 300.00190 * 26 25 14 44 44 H 1.08997 * 109.47070 * 59.99887 * 27 25 14 45 45 H 1.08994 * 109.47108 * 179.97438 * 27 25 14 46 46 H 1.09000 * 109.46880 * 299.99641 * 27 25 14 47 47 H 1.09004 * 110.37013 * 274.74534 * 28 12 10 48 48 H 1.08999 * 110.36578 * 37.06481 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2140 1.1850 0.0000 4 6 3.6048 1.1472 0.0005 5 8 4.3043 2.3077 0.0011 6 7 4.2548 -0.0066 0.0016 7 6 3.6205 -1.1601 0.0016 8 6 4.4080 -2.4449 0.0022 9 6 2.2256 -1.2044 0.0000 10 6 1.5171 -2.4995 -0.0005 11 8 1.2242 -3.0325 1.0522 12 7 1.1951 -3.0909 -1.1680 13 6 1.4881 -2.5597 -2.5071 14 6 0.9124 -3.5590 -3.5326 15 1 0.4613 -3.0321 -4.3733 16 7 1.9510 -4.4829 -3.9952 17 6 2.7568 -4.1363 -5.0467 18 1 2.6264 -3.1819 -5.5353 19 6 3.7412 -5.0114 -5.4848 20 7 3.8997 -6.1747 -4.8898 21 14 4.8399 -4.5388 -6.9197 22 1 4.4604 -3.1895 -7.4102 23 1 6.2563 -4.5228 -6.4741 24 1 4.6766 -5.5282 -8.0150 25 6 -0.1682 -4.3134 -2.7137 26 6 -1.4752 -3.5194 -2.6679 27 6 -0.4021 -5.7169 -3.2762 28 6 0.4963 -4.3808 -1.3136 29 1 -0.3634 0.0001 -1.0277 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3633 0.8900 0.5139 32 1 1.6936 2.1313 0.0045 33 1 4.5070 2.6443 0.8847 34 1 4.5975 -2.7545 1.0300 35 1 3.8393 -3.2200 -0.5116 36 1 5.3569 -2.2898 -0.5113 37 1 1.0137 -1.5861 -2.6317 38 1 2.5658 -2.4666 -2.6414 39 1 2.0678 -5.3402 -3.5567 40 1 4.5873 -6.7864 -5.1962 41 1 -1.8458 -3.3707 -3.6822 42 1 -2.2154 -4.0710 -2.0883 43 1 -1.2958 -2.5508 -2.2011 44 1 0.5275 -6.2845 -3.2345 45 1 -1.1636 -6.2236 -2.6835 46 1 -0.7364 -5.6426 -4.3110 47 1 1.2082 -5.2051 -1.2683 48 1 -0.2624 -4.4908 -0.5388 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000996655287.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:35:35 Heat of formation + Delta-G solvation = -53.147866 kcal Electronic energy + Delta-G solvation = -30334.899067 eV Core-core repulsion = 26389.285242 eV Total energy + Delta-G solvation = -3945.613825 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.17741 -40.99540 -39.36759 -38.12123 -35.74219 -35.40307 -34.63188 -32.83974 -32.59904 -29.50477 -29.17738 -29.09197 -28.00013 -27.34411 -25.74743 -24.51935 -23.05912 -22.43131 -20.85452 -20.22652 -19.45809 -19.09757 -18.40457 -18.23733 -17.34158 -16.79077 -16.71587 -16.34194 -15.79687 -15.43542 -15.27225 -15.07035 -14.85478 -14.60847 -14.45500 -14.33196 -14.14055 -13.82141 -13.76699 -13.49647 -13.43380 -13.23453 -13.15647 -13.04815 -12.97386 -12.85276 -12.76443 -12.67365 -12.65172 -12.14677 -12.04030 -11.87143 -11.45980 -11.35509 -11.20600 -10.95686 -10.66281 -10.56119 -9.90640 -9.71686 -9.00984 -7.92832 -5.20343 -0.34486 0.02240 1.35508 1.47019 1.49169 1.56933 1.90285 2.28836 2.56207 2.57187 3.24170 3.33397 3.38735 3.45836 3.64387 3.79642 3.87301 3.95600 4.04853 4.15627 4.25755 4.30545 4.33101 4.46184 4.47037 4.49317 4.58643 4.61600 4.66019 4.76489 4.80236 4.88867 4.92151 4.92938 4.99976 5.03640 5.09642 5.11155 5.11909 5.23907 5.33177 5.39123 5.42462 5.54792 5.62002 6.28921 6.40382 6.53724 6.77652 6.94960 7.37183 8.10751 8.33798 9.30340 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.010055 B = 0.004612 C = 0.003638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2783.915619 B = 6070.030815 C = 7694.741723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.010 3.990 3 C -0.184 4.184 4 C 0.325 3.675 5 O -0.485 6.485 6 N -0.533 5.533 7 C 0.182 3.818 8 C -0.108 4.108 9 C -0.200 4.200 10 C 0.590 3.410 11 O -0.573 6.573 12 N -0.591 5.591 13 C 0.087 3.913 14 C 0.171 3.829 15 H 0.079 0.921 16 N -0.721 5.721 17 C -0.233 4.233 18 H 0.078 0.922 19 C -0.067 4.067 20 N -0.965 5.965 21 Si 0.960 3.040 22 H -0.266 1.266 23 H -0.301 1.301 24 H -0.295 1.295 25 C -0.074 4.074 26 C -0.123 4.123 27 C -0.120 4.120 28 C 0.119 3.881 29 H 0.098 0.902 30 H 0.060 0.940 31 H 0.109 0.891 32 H 0.183 0.817 33 H 0.424 0.576 34 H 0.093 0.907 35 H 0.060 0.940 36 H 0.084 0.916 37 H 0.078 0.922 38 H 0.044 0.956 39 H 0.377 0.623 40 H 0.249 0.751 41 H 0.069 0.931 42 H 0.072 0.928 43 H 0.058 0.942 44 H 0.037 0.963 45 H 0.072 0.928 46 H 0.057 0.943 47 H 0.048 0.952 48 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.795 14.745 10.390 21.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.002 3.998 3 C -0.204 4.204 4 C 0.147 3.853 5 O -0.296 6.296 6 N -0.253 5.253 7 C 0.044 3.956 8 C -0.165 4.165 9 C -0.205 4.205 10 C 0.378 3.622 11 O -0.454 6.454 12 N -0.321 5.321 13 C -0.038 4.038 14 C 0.061 3.939 15 H 0.096 0.904 16 N -0.361 5.361 17 C -0.364 4.364 18 H 0.095 0.905 19 C -0.260 4.260 20 N -0.616 5.616 21 Si 0.791 3.209 22 H -0.191 1.191 23 H -0.229 1.229 24 H -0.222 1.222 25 C -0.076 4.076 26 C -0.180 4.180 27 C -0.178 4.178 28 C -0.003 4.003 29 H 0.116 0.884 30 H 0.079 0.921 31 H 0.128 0.872 32 H 0.201 0.799 33 H 0.286 0.714 34 H 0.112 0.888 35 H 0.079 0.921 36 H 0.103 0.897 37 H 0.096 0.904 38 H 0.062 0.938 39 H 0.210 0.790 40 H 0.058 0.942 41 H 0.088 0.912 42 H 0.091 0.909 43 H 0.077 0.923 44 H 0.056 0.944 45 H 0.091 0.909 46 H 0.076 0.924 47 H 0.066 0.934 48 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -9.982 14.633 10.242 20.461 hybrid contribution 0.860 -0.511 -0.182 1.017 sum -9.122 14.121 10.060 19.591 Atomic orbital electron populations 1.20999 0.87304 1.04688 1.04554 1.20525 0.98359 0.90124 0.90777 1.22135 0.92912 1.00224 1.05171 1.19538 0.88011 0.84898 0.92890 1.84689 1.75914 1.32935 1.36049 1.66944 1.42780 0.98476 1.17135 1.20983 0.89603 0.93233 0.91766 1.20783 1.00412 0.91528 1.03811 1.20607 0.94705 0.94562 1.10657 1.17649 0.77990 0.84171 0.82367 1.90760 1.56627 1.66416 1.31612 1.48389 1.56124 1.22026 1.05590 1.23006 1.00155 0.98769 0.81897 1.21464 0.88504 0.90223 0.93727 0.90354 1.42580 1.37485 1.18786 1.37203 1.19590 1.09266 1.00714 1.06879 0.90451 1.25378 1.01485 0.96834 1.02273 1.69798 1.36825 1.10060 1.44898 0.85264 0.78443 0.77665 0.79558 1.19052 1.22888 1.22224 1.22006 0.95708 0.97217 0.92634 1.21650 0.94050 0.99413 1.02915 1.21510 1.01067 0.94299 1.00897 1.22388 0.95381 0.84526 0.98037 0.88381 0.92122 0.87199 0.79940 0.71403 0.88828 0.92102 0.89716 0.90361 0.93768 0.78951 0.94232 0.91162 0.90928 0.92291 0.94401 0.90890 0.92388 0.93369 0.89768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.97 9.69 71.23 0.69 -1.28 16 2 C 0.01 0.23 5.95 -19.43 -0.12 0.12 16 3 C -0.18 -3.60 9.73 22.43 0.22 -3.38 16 4 C 0.33 7.92 7.74 84.82 0.66 8.58 16 5 O -0.49 -9.33 13.55 -87.98 -1.19 -10.52 16 6 N -0.53 -16.39 10.28 -295.90 -3.04 -19.43 16 7 C 0.18 5.85 6.82 42.90 0.29 6.14 16 8 C -0.11 -3.50 9.78 71.23 0.70 -2.80 16 9 C -0.20 -6.03 4.83 -19.99 -0.10 -6.12 16 10 C 0.59 19.73 4.36 86.72 0.38 20.11 16 11 O -0.57 -22.26 17.36 -3.96 -0.07 -22.33 16 12 N -0.59 -18.94 3.31 -815.00 -2.70 -21.64 16 13 C 0.09 2.87 5.89 86.73 0.51 3.38 16 14 C 0.17 5.91 2.86 46.18 0.13 6.05 16 15 H 0.08 2.61 8.03 -2.39 -0.02 2.59 16 16 N -0.72 -32.95 4.61 -317.32 -1.46 -34.42 16 17 C -0.23 -12.02 9.98 84.03 0.84 -11.18 16 18 H 0.08 3.84 7.83 -2.91 -0.02 3.82 16 19 C -0.07 -3.69 5.50 84.86 0.47 -3.23 16 20 N -0.97 -57.18 13.06 21.65 0.28 -56.90 16 21 Si 0.96 45.19 29.55 68.60 2.03 47.22 16 22 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 23 H -0.30 -14.53 7.11 99.48 0.71 -13.82 16 24 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 25 C -0.07 -2.08 0.83 -50.71 -0.04 -2.12 16 26 C -0.12 -2.53 8.58 71.98 0.62 -1.91 16 27 C -0.12 -3.51 8.22 71.98 0.59 -2.92 16 28 C 0.12 3.70 5.82 86.93 0.51 4.20 16 29 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 30 H 0.06 1.24 7.19 -2.39 -0.02 1.23 16 31 H 0.11 1.12 8.10 -2.39 -0.02 1.10 16 32 H 0.18 2.11 8.06 -2.91 -0.02 2.09 16 33 H 0.42 3.43 9.06 -74.06 -0.67 2.76 16 34 H 0.09 2.74 8.14 -2.39 -0.02 2.72 16 35 H 0.06 2.21 7.07 -2.38 -0.02 2.19 16 36 H 0.08 2.69 8.14 -2.39 -0.02 2.67 16 37 H 0.08 2.17 8.14 -2.38 -0.02 2.15 16 38 H 0.04 1.76 8.05 -2.39 -0.02 1.74 16 39 H 0.38 18.88 6.10 -92.71 -0.57 18.31 16 40 H 0.25 14.48 8.31 -92.71 -0.77 13.71 16 41 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 42 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 43 H 0.06 1.16 7.91 -2.39 -0.02 1.14 16 44 H 0.04 1.35 6.38 -2.39 -0.02 1.34 16 45 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 46 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 47 H 0.05 1.73 7.99 -2.38 -0.02 1.71 16 48 H 0.08 2.42 7.95 -2.39 -0.02 2.40 16 Total: -1.00 -71.38 392.77 -0.07 -71.45 By element: Atomic # 1 Polarization: 33.19 SS G_CDS: -0.25 Total: 32.94 kcal Atomic # 6 Polarization: 7.29 SS G_CDS: 6.34 Total: 13.63 kcal Atomic # 7 Polarization: -125.47 SS G_CDS: -6.92 Total: -132.39 kcal Atomic # 8 Polarization: -31.59 SS G_CDS: -1.26 Total: -32.85 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.22 kcal Total: -71.38 -0.07 -71.45 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996655287.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.302 kcal (2) G-P(sol) polarization free energy of solvation -71.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds