Wall clock time and date at job start Tue Mar 31 2020 17:14:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38089 * 119.58200 * 2 1 4 4 C 1.38784 * 119.28687 * 180.25102 * 3 2 1 5 5 C 1.50703 * 120.75870 * 179.75225 * 4 3 2 6 6 C 1.38426 * 118.48558 * 359.47662 * 4 3 2 7 7 C 1.50691 * 120.44527 * 180.23367 * 6 4 3 8 8 C 1.50707 * 109.47529 * 89.99576 * 7 6 4 9 9 O 1.21283 * 119.99613 * 0.02562 * 8 7 6 10 10 N 1.34772 * 120.00130 * 179.97438 * 8 7 6 11 11 C 1.46501 * 119.99853 * 0.02562 * 10 8 7 12 12 C 1.46494 * 120.00173 * 180.02562 * 10 8 7 13 13 C 1.53776 * 113.61626 * 217.49874 * 12 10 8 14 14 C 1.53783 * 87.08387 * 220.01550 * 13 12 10 15 15 N 1.46496 * 113.69322 * 139.98899 * 14 13 12 16 16 C 1.36940 * 120.00018 * 107.46527 * 15 14 13 17 17 H 1.08002 * 119.99506 * 0.02562 * 16 15 14 18 18 C 1.38808 * 119.99924 * 179.97438 * 16 15 14 19 19 N 1.31616 * 120.00371 * 0.02562 * 18 16 15 20 20 Si 1.86806 * 119.99756 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.46995 * 60.00395 * 20 18 16 22 22 H 1.48502 * 109.47022 * 180.02562 * 20 18 16 23 23 H 1.48494 * 109.47197 * 300.00263 * 20 18 16 24 24 C 1.53778 * 113.61840 * 119.99654 * 12 10 8 25 25 C 1.38878 * 119.11097 * 0.25163 * 6 4 3 26 26 O 1.35676 * 119.68312 * 180.02562 * 25 6 4 27 27 N 1.31931 * 119.58324 * 179.71756 * 2 1 3 28 28 H 1.08997 * 109.47441 * 270.27931 * 1 2 3 29 29 H 1.08997 * 109.47127 * 30.28391 * 1 2 3 30 30 H 1.09002 * 109.46523 * 150.27853 * 1 2 3 31 31 H 1.08004 * 120.35814 * 359.97434 * 3 2 1 32 32 H 1.09002 * 109.47152 * 269.71689 * 5 4 3 33 33 H 1.09001 * 109.46980 * 149.71789 * 5 4 3 34 34 H 1.09004 * 109.47113 * 29.71770 * 5 4 3 35 35 H 1.09003 * 109.47361 * 209.99932 * 7 6 4 36 36 H 1.09009 * 109.47268 * 330.00050 * 7 6 4 37 37 H 1.08997 * 109.47461 * 90.00194 * 11 10 8 38 38 H 1.09001 * 109.47074 * 210.00308 * 11 10 8 39 39 H 1.09000 * 109.47375 * 329.99864 * 11 10 8 40 40 H 1.09006 * 112.84766 * 348.80784 * 12 10 8 41 41 H 1.08994 * 113.61675 * 334.56596 * 13 12 10 42 42 H 1.08998 * 113.61687 * 105.47042 * 13 12 10 43 43 H 1.09002 * 113.61470 * 270.88742 * 14 13 12 44 44 H 0.96998 * 120.00241 * 287.46803 * 15 14 13 45 45 H 0.97002 * 120.00283 * 179.97438 * 19 18 16 46 46 H 1.09000 * 113.61630 * 254.53366 * 24 12 10 47 47 H 1.09001 * 113.61026 * 25.43625 * 24 12 10 48 48 H 0.96693 * 114.00375 * 89.99770 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1888 1.2009 0.0000 4 6 3.5766 1.1937 -0.0053 5 6 4.3539 2.4848 -0.0111 6 6 4.2305 -0.0263 0.0007 7 6 5.7363 -0.0855 0.0006 8 6 6.2387 -0.0980 1.4214 9 8 5.4514 -0.0628 2.3433 10 7 7.5628 -0.1494 1.6675 11 6 8.5137 -0.1925 0.5539 12 6 8.0512 -0.1621 3.0486 13 6 9.3435 0.6460 3.2524 14 6 9.8087 -0.4828 4.1875 15 7 11.2272 -0.8193 4.0436 16 6 12.1182 -0.4620 5.0202 17 1 11.7750 0.0675 5.8967 18 6 13.4622 -0.7814 4.8842 19 7 13.8803 -1.4272 3.8163 20 14 14.6774 -0.2946 6.2168 21 1 14.2857 -0.9307 7.5002 22 1 16.0390 -0.7476 5.8345 23 1 14.6737 1.1820 6.3747 24 6 8.8717 -1.4141 3.4004 25 6 3.4803 -1.1950 0.0064 26 8 4.1093 -2.3971 0.0128 27 7 2.1584 -1.1473 0.0057 28 1 -0.3634 0.0050 1.0276 29 1 -0.3633 0.8874 -0.5182 30 1 -0.3632 -0.8925 -0.5095 31 1 1.6478 2.1357 -0.0004 32 1 4.5418 2.7912 -1.0401 33 1 5.3036 2.3394 0.5038 34 1 3.7787 3.2576 0.4989 35 1 6.0643 -0.9917 -0.5088 36 1 6.1342 0.7869 -0.5178 37 1 8.7903 0.8236 0.2727 38 1 9.4052 -0.7407 0.8584 39 1 8.0531 -0.6926 -0.2981 40 1 7.2718 0.0675 3.7753 41 1 9.9462 0.7410 2.3492 42 1 9.1879 1.5976 3.7607 43 1 9.5108 -0.3400 5.2262 44 1 11.5354 -1.2952 3.2566 45 1 14.8196 -1.6500 3.7210 46 1 8.3352 -2.1257 4.0280 47 1 9.3454 -1.8824 2.5375 48 1 4.2914 -2.7411 0.8980 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999286547.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:14:25 Heat of formation + Delta-G solvation = -10.015307 kcal Electronic energy + Delta-G solvation = -28579.791212 eV Core-core repulsion = 24636.047754 eV Total energy + Delta-G solvation = -3943.743457 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.15793 -39.99042 -38.07550 -37.44881 -35.00904 -34.83497 -33.16108 -32.14217 -30.62507 -29.85317 -28.02385 -27.02939 -26.38953 -25.17087 -24.36899 -23.10269 -22.27740 -21.09124 -19.39923 -18.82386 -18.52368 -17.50677 -17.24844 -17.12314 -16.32609 -15.84960 -15.52818 -15.39031 -14.60975 -14.50640 -14.41825 -13.87565 -13.78300 -13.50660 -13.45036 -13.21464 -13.04454 -12.96375 -12.83391 -12.60748 -12.36374 -12.24127 -12.11674 -12.02470 -11.86667 -11.79262 -11.66762 -11.27989 -10.91876 -10.62101 -10.51092 -10.31760 -10.06055 -9.89673 -9.67227 -9.65175 -9.51587 -8.93498 -8.82860 -8.49751 -7.03076 -5.83739 -3.12836 0.75147 0.96836 2.56273 2.97605 3.22172 3.40437 3.45221 3.45906 3.59440 4.19141 4.31797 4.52222 4.54870 4.57733 4.59805 4.91922 5.04369 5.05031 5.07723 5.10528 5.11296 5.16269 5.22468 5.28746 5.33664 5.36609 5.40946 5.46554 5.51802 5.57334 5.70781 5.76829 5.80760 5.81640 5.92111 6.02143 6.10556 6.24025 6.29148 6.30326 6.39969 6.51449 6.74877 6.98509 7.27759 7.45811 7.64723 7.74355 8.14531 8.34631 9.46003 10.02272 10.36932 11.38435 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.030028 B = 0.002111 C = 0.002081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.229298 B =13262.037441 C =13449.130169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.150 3.850 3 C -0.184 4.184 4 C -0.012 4.012 5 C -0.119 4.119 6 C -0.134 4.134 7 C -0.098 4.098 8 C 0.514 3.486 9 O -0.543 6.543 10 N -0.597 5.597 11 C 0.071 3.929 12 C 0.116 3.884 13 C -0.174 4.174 14 C 0.170 3.830 15 N -0.709 5.709 16 C -0.245 4.245 17 H 0.071 0.929 18 C -0.012 4.012 19 N -0.933 5.933 20 Si 0.908 3.092 21 H -0.285 1.285 22 H -0.291 1.291 23 H -0.286 1.286 24 C -0.163 4.163 25 C 0.332 3.668 26 O -0.483 6.483 27 N -0.508 5.508 28 H 0.079 0.921 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.137 0.863 32 H 0.080 0.920 33 H 0.072 0.928 34 H 0.075 0.925 35 H 0.111 0.889 36 H 0.104 0.896 37 H 0.058 0.942 38 H 0.083 0.917 39 H 0.070 0.930 40 H 0.113 0.887 41 H 0.083 0.917 42 H 0.059 0.941 43 H 0.079 0.921 44 H 0.385 0.615 45 H 0.256 0.744 46 H 0.063 0.937 47 H 0.081 0.919 48 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.022 5.832 -12.009 26.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.012 3.988 3 C -0.204 4.204 4 C -0.019 4.019 5 C -0.176 4.176 6 C -0.138 4.138 7 C -0.138 4.138 8 C 0.302 3.698 9 O -0.421 6.421 10 N -0.328 5.328 11 C -0.072 4.072 12 C 0.013 3.987 13 C -0.216 4.216 14 C 0.057 3.943 15 N -0.347 5.347 16 C -0.377 4.377 17 H 0.089 0.911 18 C -0.208 4.208 19 N -0.580 5.580 20 Si 0.739 3.261 21 H -0.212 1.212 22 H -0.217 1.217 23 H -0.212 1.212 24 C -0.203 4.203 25 C 0.153 3.847 26 O -0.290 6.290 27 N -0.227 5.227 28 H 0.098 0.902 29 H 0.095 0.905 30 H 0.096 0.904 31 H 0.155 0.845 32 H 0.098 0.902 33 H 0.091 0.909 34 H 0.094 0.906 35 H 0.129 0.871 36 H 0.122 0.878 37 H 0.077 0.923 38 H 0.102 0.898 39 H 0.088 0.912 40 H 0.130 0.870 41 H 0.102 0.898 42 H 0.078 0.922 43 H 0.097 0.903 44 H 0.219 0.781 45 H 0.066 0.934 46 H 0.082 0.918 47 H 0.100 0.900 48 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges -23.714 5.128 -11.954 27.048 hybrid contribution 1.511 0.682 0.815 1.848 sum -22.203 5.810 -11.140 25.511 Atomic orbital electron populations 1.20734 0.88558 1.03512 1.03277 1.20963 0.96699 0.87203 0.93898 1.21776 0.93876 0.99350 1.05368 1.20054 0.93718 0.94822 0.93348 1.20870 1.00330 0.93521 1.02834 1.20132 0.95513 0.92825 1.05322 1.20592 0.91703 1.05722 0.95761 1.20451 0.82204 0.76378 0.90798 1.90695 1.54955 1.50139 1.46278 1.47883 1.05360 1.72009 1.07569 1.21848 0.94345 1.02196 0.88768 1.22612 0.95526 0.98631 0.81958 1.24319 0.95024 0.99896 1.02375 1.21333 0.85173 0.91877 0.95943 1.42339 1.00940 1.67428 1.23995 1.19262 0.88562 1.30468 0.99369 0.91063 1.24765 0.97183 1.00944 0.97925 1.69641 1.15220 1.45025 1.28152 0.86253 0.80532 0.78098 0.81204 1.21191 1.21673 1.21217 1.23927 0.98269 0.97046 1.01038 1.18809 0.86577 0.84877 0.94409 1.84676 1.76510 1.33612 1.34225 1.66972 1.09513 1.30718 1.15544 0.90209 0.90530 0.90397 0.84514 0.90174 0.90872 0.90593 0.87108 0.87755 0.92327 0.89839 0.91184 0.86954 0.89840 0.92202 0.90320 0.78109 0.93377 0.91802 0.90041 0.73850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.72 10.17 36.01 0.37 -0.36 16 2 C 0.15 1.58 6.78 -82.60 -0.56 1.02 16 3 C -0.18 -1.73 9.44 -39.43 -0.37 -2.10 16 4 C -0.01 -0.12 5.91 -104.35 -0.62 -0.74 16 5 C -0.12 -0.92 9.28 36.01 0.33 -0.58 16 6 C -0.13 -1.54 4.40 -104.32 -0.46 -2.00 16 7 C -0.10 -0.97 3.51 -29.04 -0.10 -1.07 16 8 C 0.51 6.63 7.35 -10.98 -0.08 6.55 16 9 O -0.54 -8.89 15.52 5.55 0.09 -8.81 16 10 N -0.60 -7.53 3.08 -173.01 -0.53 -8.07 16 11 C 0.07 0.72 8.84 59.85 0.53 1.25 16 12 C 0.12 1.71 4.21 -67.13 -0.28 1.43 16 13 C -0.17 -2.84 7.31 -25.92 -0.19 -3.03 16 14 C 0.17 3.22 4.48 -67.12 -0.30 2.92 16 15 N -0.71 -17.07 5.40 -52.64 -0.28 -17.35 16 16 C -0.25 -6.63 9.97 -15.06 -0.15 -6.78 16 17 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 18 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 19 N -0.93 -27.40 13.06 55.49 0.72 -26.67 16 20 Si 0.91 21.95 29.55 -169.99 -5.02 16.93 16 21 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 22 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 23 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 24 C -0.16 -2.61 7.37 -25.92 -0.19 -2.80 16 25 C 0.33 4.25 7.72 -17.12 -0.13 4.12 16 26 O -0.48 -5.64 12.62 -18.73 -0.24 -5.88 16 27 N -0.51 -6.64 10.30 -9.55 -0.10 -6.74 16 28 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.08 0.36 8.08 -51.93 -0.42 -0.06 16 30 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.14 0.88 8.06 -52.48 -0.42 0.46 16 32 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.07 0.64 6.55 -51.93 -0.34 0.30 16 34 H 0.08 0.50 8.10 -51.93 -0.42 0.08 16 35 H 0.11 0.99 6.81 -51.93 -0.35 0.64 16 36 H 0.10 0.81 6.77 -51.92 -0.35 0.46 16 37 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 38 H 0.08 0.95 6.34 -51.93 -0.33 0.62 16 39 H 0.07 0.54 6.44 -51.93 -0.33 0.20 16 40 H 0.11 1.77 7.23 -51.93 -0.38 1.39 16 41 H 0.08 1.39 6.72 -51.93 -0.35 1.04 16 42 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 43 H 0.08 1.51 8.10 -51.93 -0.42 1.09 16 44 H 0.38 9.76 7.92 -40.82 -0.32 9.44 16 45 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 46 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 47 H 0.08 1.31 6.90 -51.93 -0.36 0.95 16 48 H 0.40 3.57 9.06 45.56 0.41 3.98 16 LS Contribution 391.18 15.07 5.89 5.89 Total: -1.00 -34.01 391.18 -8.24 -42.26 By element: Atomic # 1 Polarization: 17.52 SS G_CDS: -6.47 Total: 11.05 kcal Atomic # 6 Polarization: -0.30 SS G_CDS: -2.30 Total: -2.61 kcal Atomic # 7 Polarization: -58.64 SS G_CDS: -0.19 Total: -58.84 kcal Atomic # 8 Polarization: -14.53 SS G_CDS: -0.15 Total: -14.68 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -34.01 -8.24 -42.26 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999286547.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.241 kcal (2) G-P(sol) polarization free energy of solvation -34.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds