Wall clock time and date at job start Tue Mar 31 2020 17:14:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38089 * 119.58200 * 2 1 4 4 C 1.38784 * 119.28687 * 180.25102 * 3 2 1 5 5 C 1.50703 * 120.75870 * 179.75225 * 4 3 2 6 6 C 1.38426 * 118.48558 * 359.47662 * 4 3 2 7 7 C 1.50691 * 120.44527 * 180.23367 * 6 4 3 8 8 C 1.50707 * 109.47529 * 89.99576 * 7 6 4 9 9 O 1.21283 * 119.99613 * 0.02562 * 8 7 6 10 10 N 1.34772 * 120.00130 * 179.97438 * 8 7 6 11 11 C 1.46501 * 119.99853 * 0.02562 * 10 8 7 12 12 C 1.46494 * 120.00173 * 180.02562 * 10 8 7 13 13 C 1.53776 * 113.61626 * 217.49874 * 12 10 8 14 14 C 1.53783 * 87.08387 * 220.01550 * 13 12 10 15 15 N 1.46496 * 113.69322 * 139.98899 * 14 13 12 16 16 C 1.36940 * 120.00018 * 107.46527 * 15 14 13 17 17 H 1.08002 * 119.99506 * 0.02562 * 16 15 14 18 18 C 1.38808 * 119.99924 * 179.97438 * 16 15 14 19 19 N 1.31616 * 120.00371 * 0.02562 * 18 16 15 20 20 Si 1.86806 * 119.99756 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.46995 * 60.00395 * 20 18 16 22 22 H 1.48502 * 109.47022 * 180.02562 * 20 18 16 23 23 H 1.48494 * 109.47197 * 300.00263 * 20 18 16 24 24 C 1.53778 * 113.61840 * 119.99654 * 12 10 8 25 25 C 1.38878 * 119.11097 * 0.25163 * 6 4 3 26 26 O 1.35676 * 119.68312 * 180.02562 * 25 6 4 27 27 N 1.31931 * 119.58324 * 179.71756 * 2 1 3 28 28 H 1.08997 * 109.47441 * 270.27931 * 1 2 3 29 29 H 1.08997 * 109.47127 * 30.28391 * 1 2 3 30 30 H 1.09002 * 109.46523 * 150.27853 * 1 2 3 31 31 H 1.08004 * 120.35814 * 359.97434 * 3 2 1 32 32 H 1.09002 * 109.47152 * 269.71689 * 5 4 3 33 33 H 1.09001 * 109.46980 * 149.71789 * 5 4 3 34 34 H 1.09004 * 109.47113 * 29.71770 * 5 4 3 35 35 H 1.09003 * 109.47361 * 209.99932 * 7 6 4 36 36 H 1.09009 * 109.47268 * 330.00050 * 7 6 4 37 37 H 1.08997 * 109.47461 * 90.00194 * 11 10 8 38 38 H 1.09001 * 109.47074 * 210.00308 * 11 10 8 39 39 H 1.09000 * 109.47375 * 329.99864 * 11 10 8 40 40 H 1.09006 * 112.84766 * 348.80784 * 12 10 8 41 41 H 1.08994 * 113.61675 * 334.56596 * 13 12 10 42 42 H 1.08998 * 113.61687 * 105.47042 * 13 12 10 43 43 H 1.09002 * 113.61470 * 270.88742 * 14 13 12 44 44 H 0.96998 * 120.00241 * 287.46803 * 15 14 13 45 45 H 0.97002 * 120.00283 * 179.97438 * 19 18 16 46 46 H 1.09000 * 113.61630 * 254.53366 * 24 12 10 47 47 H 1.09001 * 113.61026 * 25.43625 * 24 12 10 48 48 H 0.96693 * 114.00375 * 89.99770 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1888 1.2009 0.0000 4 6 3.5766 1.1937 -0.0053 5 6 4.3539 2.4848 -0.0111 6 6 4.2305 -0.0263 0.0007 7 6 5.7363 -0.0855 0.0006 8 6 6.2387 -0.0980 1.4214 9 8 5.4514 -0.0628 2.3433 10 7 7.5628 -0.1494 1.6675 11 6 8.5137 -0.1925 0.5539 12 6 8.0512 -0.1621 3.0486 13 6 9.3435 0.6460 3.2524 14 6 9.8087 -0.4828 4.1875 15 7 11.2272 -0.8193 4.0436 16 6 12.1182 -0.4620 5.0202 17 1 11.7750 0.0675 5.8967 18 6 13.4622 -0.7814 4.8842 19 7 13.8803 -1.4272 3.8163 20 14 14.6774 -0.2946 6.2168 21 1 14.2857 -0.9307 7.5002 22 1 16.0390 -0.7476 5.8345 23 1 14.6737 1.1820 6.3747 24 6 8.8717 -1.4141 3.4004 25 6 3.4803 -1.1950 0.0064 26 8 4.1093 -2.3971 0.0128 27 7 2.1584 -1.1473 0.0057 28 1 -0.3634 0.0050 1.0276 29 1 -0.3633 0.8874 -0.5182 30 1 -0.3632 -0.8925 -0.5095 31 1 1.6478 2.1357 -0.0004 32 1 4.5418 2.7912 -1.0401 33 1 5.3036 2.3394 0.5038 34 1 3.7787 3.2576 0.4989 35 1 6.0643 -0.9917 -0.5088 36 1 6.1342 0.7869 -0.5178 37 1 8.7903 0.8236 0.2727 38 1 9.4052 -0.7407 0.8584 39 1 8.0531 -0.6926 -0.2981 40 1 7.2718 0.0675 3.7753 41 1 9.9462 0.7410 2.3492 42 1 9.1879 1.5976 3.7607 43 1 9.5108 -0.3400 5.2262 44 1 11.5354 -1.2952 3.2566 45 1 14.8196 -1.6500 3.7210 46 1 8.3352 -2.1257 4.0280 47 1 9.3454 -1.8824 2.5375 48 1 4.2914 -2.7411 0.8980 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000999286547.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:14:24 Heat of formation + Delta-G solvation = -35.209489 kcal Electronic energy + Delta-G solvation = -28580.883713 eV Core-core repulsion = 24636.047754 eV Total energy + Delta-G solvation = -3944.835959 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.99449 -41.07529 -39.34606 -38.26281 -36.19009 -35.78496 -34.85072 -32.91487 -32.03172 -31.07271 -28.67022 -27.98706 -27.26288 -26.54650 -26.06381 -24.17628 -23.42930 -21.93157 -20.68586 -20.03162 -19.34702 -19.03784 -18.30964 -18.28339 -17.44315 -16.70262 -16.54770 -16.48003 -16.04351 -16.02544 -15.16539 -15.08235 -14.97304 -14.54262 -14.27256 -14.21757 -14.02056 -13.85131 -13.76144 -13.52785 -13.27717 -13.20365 -13.13233 -13.08188 -12.92284 -12.81280 -12.74217 -12.52103 -12.44976 -12.27463 -12.14704 -11.97896 -11.67305 -11.42036 -10.93958 -10.85949 -10.44431 -10.35165 -9.61659 -9.59097 -8.98799 -7.94582 -5.22705 -0.02782 0.20514 1.48626 1.50602 1.56512 1.56753 1.99368 2.43495 2.57342 2.82763 3.36896 3.45435 3.59197 3.67352 3.79144 3.80849 3.85222 3.90079 3.95164 4.21440 4.25336 4.28400 4.32354 4.39873 4.43735 4.54511 4.62338 4.71780 4.72932 4.74482 4.79239 4.81646 4.85327 4.88599 4.99366 5.00735 5.08166 5.12207 5.14354 5.21411 5.31496 5.43355 5.51779 5.63124 5.66986 6.27284 6.42708 6.49890 6.96072 7.13379 7.34204 8.09291 8.33269 9.28051 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.030028 B = 0.002111 C = 0.002081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.229298 B =13262.037441 C =13449.130169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.134 3.866 3 C -0.184 4.184 4 C -0.021 4.021 5 C -0.116 4.116 6 C -0.149 4.149 7 C -0.087 4.087 8 C 0.516 3.484 9 O -0.581 6.581 10 N -0.596 5.596 11 C 0.066 3.934 12 C 0.133 3.867 13 C -0.159 4.159 14 C 0.151 3.849 15 N -0.722 5.722 16 C -0.245 4.245 17 H 0.075 0.925 18 C -0.074 4.074 19 N -0.967 5.967 20 Si 0.971 3.029 21 H -0.280 1.280 22 H -0.296 1.296 23 H -0.278 1.278 24 C -0.151 4.151 25 C 0.308 3.692 26 O -0.491 6.491 27 N -0.541 5.541 28 H 0.086 0.914 29 H 0.104 0.896 30 H 0.071 0.929 31 H 0.168 0.832 32 H 0.103 0.897 33 H 0.062 0.938 34 H 0.087 0.913 35 H 0.122 0.878 36 H 0.131 0.869 37 H 0.073 0.927 38 H 0.069 0.931 39 H 0.098 0.902 40 H 0.105 0.895 41 H 0.083 0.917 42 H 0.063 0.937 43 H 0.075 0.925 44 H 0.375 0.625 45 H 0.251 0.749 46 H 0.066 0.934 47 H 0.082 0.918 48 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.192 7.631 -12.824 28.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.003 4.003 3 C -0.203 4.203 4 C -0.028 4.028 5 C -0.173 4.173 6 C -0.153 4.153 7 C -0.126 4.126 8 C 0.306 3.694 9 O -0.461 6.461 10 N -0.327 5.327 11 C -0.076 4.076 12 C 0.029 3.971 13 C -0.200 4.200 14 C 0.041 3.959 15 N -0.360 5.360 16 C -0.377 4.377 17 H 0.093 0.907 18 C -0.266 4.266 19 N -0.617 5.617 20 Si 0.800 3.200 21 H -0.206 1.206 22 H -0.222 1.222 23 H -0.204 1.204 24 C -0.191 4.191 25 C 0.129 3.871 26 O -0.300 6.300 27 N -0.262 5.262 28 H 0.105 0.895 29 H 0.122 0.878 30 H 0.090 0.910 31 H 0.186 0.814 32 H 0.121 0.879 33 H 0.081 0.919 34 H 0.106 0.894 35 H 0.140 0.860 36 H 0.149 0.851 37 H 0.092 0.908 38 H 0.087 0.913 39 H 0.117 0.883 40 H 0.123 0.877 41 H 0.101 0.899 42 H 0.081 0.919 43 H 0.093 0.907 44 H 0.208 0.792 45 H 0.060 0.940 46 H 0.084 0.916 47 H 0.101 0.899 48 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges -24.926 6.946 -12.774 28.856 hybrid contribution 1.738 0.142 1.070 2.046 sum -23.187 7.088 -11.704 26.923 Atomic orbital electron populations 1.20827 0.86395 1.04577 1.03997 1.21602 0.98297 0.87113 0.93297 1.22155 0.93890 1.00204 1.04074 1.20477 0.94451 0.95405 0.92485 1.20925 0.99564 0.92496 1.04280 1.20301 0.96165 0.92942 1.05885 1.20578 0.90972 1.07421 0.93675 1.20923 0.81651 0.75155 0.91680 1.90681 1.55859 1.51841 1.47717 1.47887 1.05932 1.71737 1.07132 1.22053 0.93509 1.03356 0.88648 1.22210 0.94540 0.96871 0.83491 1.24068 0.95503 0.99091 1.01386 1.21628 0.83203 0.94323 0.96762 1.42467 1.02603 1.67735 1.23152 1.19641 0.89225 1.29120 0.99736 0.90666 1.25527 0.98985 1.01971 1.00136 1.69788 1.15032 1.46895 1.30000 0.85254 0.77971 0.77967 0.78813 1.20622 1.22247 1.20427 1.23774 0.97506 0.97252 1.00528 1.19104 0.86959 0.85454 0.95550 1.84638 1.76541 1.33800 1.35019 1.66982 1.10002 1.32323 1.16878 0.89544 0.87787 0.90995 0.81408 0.87906 0.91877 0.89402 0.86035 0.85095 0.90832 0.91252 0.88322 0.87698 0.89883 0.91862 0.90719 0.79207 0.94016 0.91565 0.89940 0.73081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.25 10.17 71.24 0.72 -0.53 16 2 C 0.13 2.68 6.78 42.51 0.29 2.97 16 3 C -0.18 -3.06 9.44 22.37 0.21 -2.85 16 4 C -0.02 -0.38 5.91 -19.69 -0.12 -0.49 16 5 C -0.12 -1.45 9.28 71.24 0.66 -0.78 16 6 C -0.15 -3.24 4.40 -19.67 -0.09 -3.32 16 7 C -0.09 -1.54 3.51 29.10 0.10 -1.44 16 8 C 0.52 12.55 7.35 87.66 0.64 13.20 16 9 O -0.58 -18.66 15.52 -3.04 -0.05 -18.71 16 10 N -0.60 -14.06 3.08 -819.66 -2.53 -16.58 16 11 C 0.07 1.19 8.84 127.77 1.13 2.32 16 12 C 0.13 3.80 4.21 45.52 0.19 4.00 16 13 C -0.16 -5.04 7.31 31.12 0.23 -4.82 16 14 C 0.15 5.73 4.48 45.52 0.20 5.93 16 15 N -0.72 -35.00 5.40 -320.44 -1.73 -36.73 16 16 C -0.25 -13.29 9.97 84.03 0.84 -12.45 16 17 H 0.08 3.92 7.83 -2.91 -0.02 3.90 16 18 C -0.07 -4.14 5.50 84.86 0.47 -3.68 16 19 N -0.97 -57.63 13.06 21.65 0.28 -57.35 16 20 Si 0.97 45.32 29.55 68.60 2.03 47.35 16 21 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 22 H -0.30 -13.96 7.11 99.48 0.71 -13.26 16 23 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 24 C -0.15 -4.77 7.37 31.12 0.23 -4.54 16 25 C 0.31 7.82 7.72 84.78 0.65 8.48 16 26 O -0.49 -11.60 12.62 -89.93 -1.14 -12.74 16 27 N -0.54 -14.16 10.30 -296.97 -3.06 -17.22 16 28 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.10 0.68 8.08 -2.39 -0.02 0.66 16 30 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.17 1.59 8.06 -2.91 -0.02 1.56 16 32 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.06 0.93 6.55 -2.39 -0.02 0.91 16 34 H 0.09 0.88 8.10 -2.38 -0.02 0.86 16 35 H 0.12 1.91 6.81 -2.39 -0.02 1.89 16 36 H 0.13 1.60 6.77 -2.38 -0.02 1.59 16 37 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.07 1.48 6.34 -2.39 -0.02 1.47 16 39 H 0.10 1.21 6.44 -2.39 -0.02 1.20 16 40 H 0.11 3.23 7.23 -2.38 -0.02 3.21 16 41 H 0.08 2.67 6.72 -2.39 -0.02 2.66 16 42 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 43 H 0.07 2.86 8.10 -2.39 -0.02 2.84 16 44 H 0.38 19.36 7.92 -92.71 -0.73 18.62 16 45 H 0.25 14.60 8.31 -92.71 -0.77 13.83 16 46 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 47 H 0.08 2.62 6.90 -2.39 -0.02 2.60 16 48 H 0.41 7.56 9.06 -74.06 -0.67 6.89 16 Total: -1.00 -74.30 391.18 -0.22 -74.53 By element: Atomic # 1 Polarization: 35.85 SS G_CDS: -0.40 Total: 35.44 kcal Atomic # 6 Polarization: -4.37 SS G_CDS: 6.37 Total: 2.00 kcal Atomic # 7 Polarization: -120.84 SS G_CDS: -7.03 Total: -127.87 kcal Atomic # 8 Polarization: -30.26 SS G_CDS: -1.18 Total: -31.45 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 2.03 Total: 47.35 kcal Total: -74.30 -0.22 -74.53 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999286547.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.317 kcal (2) G-P(sol) polarization free energy of solvation -74.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds