Wall clock time and date at job start Tue Mar 31 2020 17:12:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38089 * 119.58200 * 2 1 4 4 C 1.38784 * 119.28687 * 180.25102 * 3 2 1 5 5 C 1.50703 * 120.75870 * 179.75225 * 4 3 2 6 6 C 1.38426 * 118.48558 * 359.47662 * 4 3 2 7 7 C 1.50691 * 120.44527 * 180.23367 * 6 4 3 8 8 C 1.50707 * 109.47529 * 89.99576 * 7 6 4 9 9 O 1.21283 * 119.99613 * 0.02562 * 8 7 6 10 10 N 1.34772 * 120.00130 * 179.97438 * 8 7 6 11 11 C 1.46934 * 120.63017 * 0.02562 * 10 8 7 12 12 C 1.53193 * 108.77267 * 126.36963 * 11 10 8 13 13 C 1.53039 * 109.31310 * 54.63140 * 12 11 10 14 14 C 1.53036 * 109.54338 * 298.63462 * 13 12 11 15 15 H 1.08997 * 109.49790 * 301.38340 * 14 13 12 16 16 N 1.46495 * 109.50095 * 181.31270 * 14 13 12 17 17 C 1.36940 * 120.00016 * 155.00088 * 16 14 13 18 18 H 1.07995 * 119.99878 * 0.02562 * 17 16 14 19 19 C 1.38816 * 119.99819 * 180.02562 * 17 16 14 20 20 N 1.31613 * 120.00047 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 119.99607 * 180.02562 * 19 17 16 22 22 H 1.48492 * 109.47391 * 59.99583 * 21 19 17 23 23 H 1.48499 * 109.46931 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.47132 * 299.99309 * 21 19 17 25 25 C 1.46919 * 120.62969 * 179.72348 * 10 8 7 26 26 C 1.38878 * 119.11097 * 0.25163 * 6 4 3 27 27 O 1.35676 * 119.68312 * 180.02562 * 26 6 4 28 28 N 1.31931 * 119.58324 * 179.71756 * 2 1 3 29 29 H 1.08997 * 109.47441 * 270.27931 * 1 2 3 30 30 H 1.08997 * 109.47127 * 30.28391 * 1 2 3 31 31 H 1.09002 * 109.46523 * 150.27853 * 1 2 3 32 32 H 1.08004 * 120.35814 * 359.97434 * 3 2 1 33 33 H 1.09002 * 109.47152 * 269.71689 * 5 4 3 34 34 H 1.09001 * 109.46980 * 149.71789 * 5 4 3 35 35 H 1.09004 * 109.47113 * 29.71770 * 5 4 3 36 36 H 1.09003 * 109.47361 * 209.99932 * 7 6 4 37 37 H 1.09009 * 109.47268 * 330.00050 * 7 6 4 38 38 H 1.08993 * 109.58666 * 246.15269 * 11 10 8 39 39 H 1.08997 * 109.58469 * 6.58572 * 11 10 8 40 40 H 1.08991 * 109.49841 * 174.58719 * 12 11 10 41 41 H 1.09002 * 109.49398 * 294.65214 * 12 11 10 42 42 H 1.09002 * 109.46041 * 58.65812 * 13 12 11 43 43 H 1.08997 * 109.45956 * 178.62426 * 13 12 11 44 44 H 0.96999 * 119.99872 * 335.00562 * 16 14 13 45 45 H 0.97002 * 119.99831 * 180.02562 * 20 19 17 46 46 H 1.09002 * 109.58654 * 353.41918 * 25 10 8 47 47 H 1.09000 * 109.58952 * 113.84398 * 25 10 8 48 48 H 0.96693 * 114.00375 * 89.99770 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1888 1.2009 0.0000 4 6 3.5766 1.1937 -0.0053 5 6 4.3539 2.4848 -0.0111 6 6 4.2305 -0.0263 0.0007 7 6 5.7363 -0.0855 0.0006 8 6 6.2387 -0.0980 1.4214 9 8 5.4514 -0.0628 2.3433 10 7 7.5628 -0.1494 1.6675 11 6 8.5287 -0.1931 0.5612 12 6 9.5464 0.9363 0.7503 13 6 10.1768 0.8221 2.1401 14 6 9.0906 0.9668 3.2084 15 1 8.5922 1.9292 3.0924 16 7 9.6994 0.8886 4.5386 17 6 9.0820 1.4771 5.6099 18 1 8.1460 1.9985 5.4742 19 6 9.6592 1.4035 6.8702 20 7 10.7996 0.7676 7.0356 21 14 8.8165 2.2057 8.3316 22 1 7.4709 1.6060 8.5176 23 1 9.6297 1.9849 9.5544 24 1 8.6789 3.6635 8.0848 25 6 8.0680 -0.1561 3.0471 26 6 3.4803 -1.1950 0.0064 27 8 4.1093 -2.3971 0.0128 28 7 2.1584 -1.1473 0.0057 29 1 -0.3634 0.0050 1.0276 30 1 -0.3633 0.8874 -0.5182 31 1 -0.3632 -0.8925 -0.5095 32 1 1.6478 2.1357 -0.0004 33 1 4.5418 2.7912 -1.0401 34 1 5.3036 2.3394 0.5038 35 1 3.7787 3.2576 0.4989 36 1 6.0643 -0.9917 -0.5088 37 1 6.1342 0.7869 -0.5178 38 1 9.0441 -1.1534 0.5638 39 1 8.0060 -0.0590 -0.3858 40 1 10.3237 0.8566 -0.0095 41 1 9.0433 1.8987 0.6565 42 1 10.6586 -0.1504 2.2415 43 1 10.9190 1.6100 2.2681 44 1 10.5399 0.4201 4.6604 45 1 11.2027 0.7159 7.9163 46 1 7.2414 0.0023 3.7397 47 1 8.5450 -1.1134 3.2569 48 1 4.2914 -2.7411 0.8980 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999993210.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:12:17 Heat of formation + Delta-G solvation = -37.928687 kcal Electronic energy + Delta-G solvation = -29232.957709 eV Core-core repulsion = 25288.003837 eV Total energy + Delta-G solvation = -3944.953872 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.05919 -39.77009 -37.44441 -37.31727 -34.92367 -34.51137 -32.39962 -32.05259 -31.26653 -30.45471 -28.35047 -27.88514 -26.35638 -24.70132 -23.95395 -22.82841 -21.92829 -21.23129 -20.15795 -18.79367 -18.42977 -17.39070 -17.15317 -17.10627 -16.01563 -15.74291 -15.30688 -14.98962 -14.65643 -14.38828 -14.21372 -13.96732 -13.73746 -13.52463 -13.43694 -13.26870 -13.18653 -13.11114 -12.77666 -12.52139 -12.48375 -12.34033 -12.06144 -11.98293 -11.71889 -11.65005 -11.37867 -11.06640 -10.85694 -10.70504 -10.61747 -10.25937 -9.87605 -9.83496 -9.68040 -9.56565 -9.46224 -9.09755 -8.74075 -8.38465 -7.03165 -5.81278 -3.11268 0.84060 1.06107 2.74559 3.10716 3.31570 3.43826 3.47843 3.49531 3.68967 4.27916 4.41394 4.55060 4.62449 4.66055 4.68882 4.88181 5.01002 5.03804 5.15436 5.17418 5.19604 5.22192 5.32247 5.36525 5.43045 5.46074 5.51809 5.53396 5.60471 5.67959 5.75455 5.85202 5.89435 5.89854 5.99366 6.11574 6.12863 6.17549 6.30703 6.39466 6.45291 6.69191 6.79738 6.97096 7.35045 7.61321 7.68249 7.82511 8.32982 8.37546 9.48657 10.02453 10.37608 11.40884 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.013308 B = 0.003020 C = 0.002713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2103.525698 B = 9270.192117 C =10317.763902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.149 3.851 3 C -0.183 4.183 4 C -0.011 4.011 5 C -0.120 4.120 6 C -0.133 4.133 7 C -0.097 4.097 8 C 0.512 3.488 9 O -0.538 6.538 10 N -0.605 5.605 11 C 0.105 3.895 12 C -0.130 4.130 13 C -0.127 4.127 14 C 0.169 3.831 15 H 0.049 0.951 16 N -0.718 5.718 17 C -0.244 4.244 18 H 0.070 0.930 19 C -0.010 4.010 20 N -0.932 5.932 21 Si 0.907 3.093 22 H -0.285 1.285 23 H -0.291 1.291 24 H -0.285 1.285 25 C 0.092 3.908 26 C 0.331 3.669 27 O -0.484 6.484 28 N -0.508 5.508 29 H 0.079 0.921 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.137 0.863 33 H 0.079 0.921 34 H 0.074 0.926 35 H 0.076 0.924 36 H 0.108 0.892 37 H 0.103 0.897 38 H 0.069 0.931 39 H 0.079 0.921 40 H 0.072 0.928 41 H 0.065 0.935 42 H 0.061 0.939 43 H 0.067 0.933 44 H 0.386 0.614 45 H 0.256 0.744 46 H 0.089 0.911 47 H 0.061 0.939 48 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.035 -0.124 -20.895 24.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.012 3.988 3 C -0.203 4.203 4 C -0.018 4.018 5 C -0.176 4.176 6 C -0.137 4.137 7 C -0.137 4.137 8 C 0.299 3.701 9 O -0.415 6.415 10 N -0.339 5.339 11 C -0.018 4.018 12 C -0.169 4.169 13 C -0.165 4.165 14 C 0.058 3.942 15 H 0.067 0.933 16 N -0.359 5.359 17 C -0.375 4.375 18 H 0.088 0.912 19 C -0.206 4.206 20 N -0.580 5.580 21 Si 0.738 3.262 22 H -0.211 1.211 23 H -0.216 1.216 24 H -0.212 1.212 25 C -0.032 4.032 26 C 0.152 3.848 27 O -0.291 6.291 28 N -0.228 5.228 29 H 0.098 0.902 30 H 0.094 0.906 31 H 0.095 0.905 32 H 0.155 0.845 33 H 0.098 0.902 34 H 0.093 0.907 35 H 0.095 0.905 36 H 0.127 0.873 37 H 0.122 0.878 38 H 0.088 0.912 39 H 0.097 0.903 40 H 0.091 0.909 41 H 0.084 0.916 42 H 0.080 0.920 43 H 0.086 0.914 44 H 0.219 0.781 45 H 0.066 0.934 46 H 0.108 0.892 47 H 0.079 0.921 48 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges -12.967 -0.771 -20.824 24.544 hybrid contribution 0.513 0.770 1.441 1.713 sum -12.454 -0.002 -19.383 23.039 Atomic orbital electron populations 1.20729 0.88592 1.03433 1.03289 1.20951 0.96674 0.87215 0.93999 1.21780 0.93903 0.99346 1.05297 1.20059 0.93711 0.94851 0.93222 1.20877 1.00487 0.93533 1.02723 1.20135 0.95551 0.92819 1.05208 1.20582 0.91694 1.05458 0.95985 1.20409 0.82265 0.76786 0.90658 1.90727 1.54783 1.49820 1.46194 1.48296 1.04943 1.72315 1.08330 1.21772 0.91171 0.99529 0.89332 1.21886 0.98201 0.98596 0.98209 1.21828 0.98833 1.02284 0.93563 1.20384 0.91835 0.95788 0.86216 0.93296 1.42364 1.26005 1.65419 1.02083 1.19211 1.03921 1.27402 0.86965 0.91160 1.24743 0.97305 1.00916 0.97626 1.69647 1.18661 1.46986 1.22709 0.86270 0.78631 0.79109 0.82225 1.21118 1.21635 1.21184 1.22691 0.99487 1.00760 0.80264 1.18793 0.86580 0.84843 0.94547 1.84657 1.76546 1.33664 1.34254 1.66960 1.09509 1.30721 1.15589 0.90204 0.90557 0.90450 0.84515 0.90235 0.90749 0.90539 0.87342 0.87842 0.91222 0.90285 0.90933 0.91624 0.91997 0.91391 0.78055 0.93377 0.89212 0.92099 0.73863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.83 10.17 36.01 0.37 -0.46 16 2 C 0.15 1.74 6.78 -82.60 -0.56 1.18 16 3 C -0.18 -1.95 9.44 -39.43 -0.37 -2.33 16 4 C -0.01 -0.12 5.91 -104.35 -0.62 -0.74 16 5 C -0.12 -1.09 9.28 36.01 0.33 -0.76 16 6 C -0.13 -1.69 4.40 -104.32 -0.46 -2.15 16 7 C -0.10 -1.06 3.30 -29.04 -0.10 -1.15 16 8 C 0.51 7.56 7.38 -10.98 -0.08 7.48 16 9 O -0.54 -10.30 15.45 5.55 0.09 -10.22 16 10 N -0.61 -8.66 2.98 -173.05 -0.52 -9.18 16 11 C 0.11 1.09 6.34 -3.71 -0.02 1.07 16 12 C -0.13 -1.42 6.08 -26.61 -0.16 -1.58 16 13 C -0.13 -1.90 5.36 -26.69 -0.14 -2.04 16 14 C 0.17 3.25 2.91 -68.05 -0.20 3.05 16 15 H 0.05 1.01 8.08 -51.93 -0.42 0.59 16 16 N -0.72 -17.58 5.12 -53.55 -0.27 -17.85 16 17 C -0.24 -6.75 9.93 -15.06 -0.15 -6.90 16 18 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 19 C -0.01 -0.28 5.50 -17.43 -0.10 -0.37 16 20 N -0.93 -27.86 13.06 55.49 0.72 -27.13 16 21 Si 0.91 22.57 29.55 -169.99 -5.02 17.54 16 22 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 23 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 24 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 25 C 0.09 1.69 5.98 -3.95 -0.02 1.67 16 26 C 0.33 4.57 7.72 -17.12 -0.13 4.44 16 27 O -0.48 -6.02 12.62 -18.73 -0.24 -6.26 16 28 N -0.51 -7.17 10.30 -9.55 -0.10 -7.26 16 29 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.08 0.43 8.08 -51.93 -0.42 0.01 16 31 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.14 1.06 8.06 -52.48 -0.42 0.63 16 33 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.07 0.77 6.55 -51.93 -0.34 0.43 16 35 H 0.08 0.63 8.10 -51.93 -0.42 0.21 16 36 H 0.11 1.03 7.35 -51.93 -0.38 0.65 16 37 H 0.10 0.89 6.36 -51.92 -0.33 0.56 16 38 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 39 H 0.08 0.60 5.93 -51.93 -0.31 0.29 16 40 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 43 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 44 H 0.39 9.94 7.80 -40.82 -0.32 9.62 16 45 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 46 H 0.09 1.96 7.01 -51.93 -0.36 1.60 16 47 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 48 H 0.40 3.95 9.06 45.56 0.41 4.36 16 LS Contribution 388.69 15.07 5.86 5.86 Total: -1.00 -34.92 388.69 -8.56 -43.48 By element: Atomic # 1 Polarization: 17.27 SS G_CDS: -6.66 Total: 10.61 kcal Atomic # 6 Polarization: 2.82 SS G_CDS: -2.41 Total: 0.41 kcal Atomic # 7 Polarization: -61.26 SS G_CDS: -0.16 Total: -61.42 kcal Atomic # 8 Polarization: -16.32 SS G_CDS: -0.15 Total: -16.47 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -5.02 Total: 17.54 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -34.92 -8.56 -43.48 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999993210.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.549 kcal (2) G-P(sol) polarization free energy of solvation -34.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds