Wall clock time and date at job start Tue Mar 31 2020 17:14:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38091 * 119.58020 * 2 1 4 4 C 1.38784 * 119.28718 * 179.70162 * 3 2 1 5 5 C 1.50692 * 120.76106 * 180.29964 * 4 3 2 6 6 C 1.38425 * 118.48273 * 0.54212 * 4 3 2 7 7 C 1.50700 * 120.44253 * 179.73594 * 6 4 3 8 8 C 1.50699 * 109.47016 * 269.72226 * 7 6 4 9 9 O 1.21283 * 119.99828 * 0.02562 * 8 7 6 10 10 N 1.34777 * 120.00127 * 180.02562 * 8 7 6 11 11 C 1.46493 * 120.00113 * 180.02562 * 10 8 7 12 12 C 1.53039 * 109.46134 * 275.02623 * 11 10 8 13 13 C 1.53190 * 109.31578 * 178.60093 * 12 11 10 14 14 N 1.46924 * 108.76777 * 54.65535 * 13 12 11 15 15 C 1.36937 * 120.63726 * 126.40369 * 14 13 12 16 16 H 1.08003 * 119.99247 * 331.83767 * 15 14 13 17 17 C 1.38808 * 120.00319 * 151.82896 * 15 14 13 18 18 N 1.31618 * 119.99879 * 343.06947 * 17 15 14 19 19 Si 1.86796 * 119.99897 * 163.07501 * 17 15 14 20 20 H 1.48507 * 109.47529 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47388 * 119.99892 * 19 17 15 22 22 H 1.48511 * 109.47027 * 239.99921 * 19 17 15 23 23 C 1.46932 * 118.73684 * 306.38811 * 14 13 12 24 24 C 1.53039 * 109.46188 * 154.97080 * 11 10 8 25 25 C 1.38872 * 119.11458 * 359.46102 * 6 4 3 26 26 O 1.35676 * 119.68663 * 180.25181 * 25 6 4 27 27 N 1.31932 * 119.58536 * 179.97438 * 2 1 3 28 28 H 1.09000 * 109.47149 * 270.01798 * 1 2 3 29 29 H 1.08995 * 109.47344 * 30.02012 * 1 2 3 30 30 H 1.09000 * 109.46528 * 150.02160 * 1 2 3 31 31 H 1.08003 * 120.35679 * 359.97438 * 3 2 1 32 32 H 1.09001 * 109.47361 * 270.25094 * 5 4 3 33 33 H 1.09002 * 109.47168 * 30.24423 * 5 4 3 34 34 H 1.09000 * 109.47488 * 150.24815 * 5 4 3 35 35 H 1.09000 * 109.47185 * 149.72513 * 7 6 4 36 36 H 1.08997 * 109.47486 * 29.72050 * 7 6 4 37 37 H 0.97000 * 120.00132 * 359.97438 * 10 8 7 38 38 H 1.09004 * 109.46197 * 34.99575 * 11 10 8 39 39 H 1.09000 * 109.49810 * 298.56826 * 12 11 10 40 40 H 1.09000 * 109.50082 * 58.66000 * 12 11 10 41 41 H 1.09000 * 109.60155 * 294.86605 * 13 12 11 42 42 H 1.09000 * 109.70652 * 174.50217 * 13 12 11 43 43 H 0.97004 * 119.99630 * 179.97438 * 18 17 15 44 44 H 1.09004 * 109.58549 * 293.81385 * 23 14 13 45 45 H 1.08994 * 109.70387 * 173.46645 * 23 14 13 46 46 H 1.09001 * 109.49945 * 301.33811 * 24 11 10 47 47 H 1.09004 * 109.49566 * 61.40382 * 24 11 10 48 48 H 0.96703 * 114.00306 * 90.00316 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1887 1.2009 0.0000 4 6 3.5765 1.1938 0.0063 5 6 4.3538 2.4848 0.0133 6 6 4.2305 -0.0262 0.0009 7 6 5.7363 -0.0854 0.0014 8 6 6.2387 -0.1053 -1.4193 9 8 5.4514 -0.0740 -2.3413 10 7 7.5628 -0.1579 -1.6652 11 6 8.0512 -0.1767 -3.0462 12 6 8.0449 -1.6147 -3.5697 13 6 8.5229 -1.6262 -5.0250 14 7 9.8323 -0.9637 -5.0978 15 6 10.9023 -1.5941 -5.6745 16 1 10.9609 -2.6726 -5.6688 17 6 11.9115 -0.8473 -6.2666 18 7 11.7016 0.4149 -6.5749 19 14 13.5674 -1.6337 -6.6258 20 1 13.5476 -3.0521 -6.1863 21 1 13.8394 -1.5707 -8.0843 22 1 14.6319 -0.9033 -5.8917 23 6 9.9716 0.3886 -4.5402 24 6 9.4770 0.3775 -3.0904 25 6 3.4804 -1.1949 0.0008 26 8 4.1094 -2.3970 0.0007 27 7 2.1584 -1.1473 0.0005 28 1 -0.3633 0.0003 1.0277 29 1 -0.3634 0.8897 -0.5141 30 1 -0.3632 -0.8902 -0.5135 31 1 1.6477 2.1357 -0.0004 32 1 4.5421 2.8011 -1.0127 33 1 3.7784 3.2526 0.5303 34 1 5.3033 2.3345 0.5272 35 1 6.0643 -0.9889 0.5154 36 1 6.1342 0.7897 0.5152 37 1 8.1925 -0.1826 -0.9277 38 1 7.4026 0.4393 -3.6691 39 1 8.7126 -2.2259 -2.9624 40 1 7.0333 -2.0171 -3.5160 41 1 7.8074 -1.0910 -5.6492 42 1 8.6142 -2.6549 -5.3738 43 1 12.4070 0.9369 -6.9883 44 1 9.3742 1.0883 -5.1248 45 1 11.0184 0.6910 -4.5669 46 1 9.4849 1.3935 -2.6955 47 1 10.1310 -0.2523 -2.4872 48 1 4.2917 -2.7457 0.8841 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001003483963.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:14:15 Heat of formation + Delta-G solvation = -60.060448 kcal Electronic energy + Delta-G solvation = -28843.552004 eV Core-core repulsion = 24897.638427 eV Total energy + Delta-G solvation = -3945.913577 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.90305 -40.71894 -38.95166 -38.28047 -36.08032 -35.68411 -33.96676 -32.91340 -31.97960 -31.52113 -30.67169 -28.65325 -27.38474 -26.39077 -24.12179 -23.86679 -23.42478 -22.03338 -21.32108 -20.85113 -19.37087 -18.89899 -18.24576 -17.92374 -17.37444 -16.81647 -16.53564 -16.11702 -16.01679 -15.60475 -15.37535 -15.13768 -14.87238 -14.64668 -14.50998 -14.41625 -14.09420 -14.07938 -13.83591 -13.77888 -13.23713 -13.20501 -13.03570 -12.86145 -12.77812 -12.63759 -12.54804 -12.46899 -12.40836 -12.21684 -12.00723 -11.89570 -11.56306 -11.37339 -10.93516 -10.58147 -10.42484 -10.35595 -9.98678 -9.60570 -8.72806 -7.89353 -5.35480 0.00027 0.22166 1.46934 1.48734 1.59805 1.70835 2.20858 2.50813 2.59989 2.73922 3.26533 3.45710 3.63068 3.69784 3.81554 3.87294 3.91449 4.01602 4.11148 4.24107 4.31714 4.39393 4.44311 4.48653 4.57766 4.61743 4.67632 4.73814 4.78861 4.81197 4.83522 4.86626 5.01380 5.02918 5.03282 5.12525 5.14019 5.23676 5.26793 5.34818 5.45449 5.57786 5.63266 5.68639 5.70195 6.37388 6.62842 6.67147 6.99176 7.12890 7.35840 7.81641 8.35091 9.17919 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.027236 B = 0.002304 C = 0.002241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.788555 B =12151.950294 C =12493.227676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.133 3.867 3 C -0.187 4.187 4 C -0.021 4.021 5 C -0.119 4.119 6 C -0.152 4.152 7 C -0.085 4.085 8 C 0.514 3.486 9 O -0.585 6.585 10 N -0.711 5.711 11 C 0.164 3.836 12 C -0.123 4.123 13 C 0.145 3.855 14 N -0.609 5.609 15 C -0.263 4.263 16 H 0.066 0.934 17 C -0.050 4.050 18 N -0.936 5.936 19 Si 0.970 3.030 20 H -0.267 1.267 21 H -0.294 1.294 22 H -0.285 1.285 23 C 0.178 3.822 24 C -0.126 4.126 25 C 0.311 3.689 26 O -0.492 6.492 27 N -0.543 5.543 28 H 0.096 0.904 29 H 0.097 0.903 30 H 0.066 0.934 31 H 0.166 0.834 32 H 0.068 0.932 33 H 0.097 0.903 34 H 0.089 0.911 35 H 0.128 0.872 36 H 0.139 0.861 37 H 0.416 0.584 38 H 0.052 0.948 39 H 0.068 0.932 40 H 0.051 0.949 41 H 0.003 0.997 42 H 0.055 0.945 43 H 0.251 0.749 44 H -0.008 1.008 45 H 0.065 0.935 46 H 0.080 0.920 47 H 0.072 0.928 48 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.362 3.997 23.319 28.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.004 4.004 3 C -0.206 4.206 4 C -0.029 4.029 5 C -0.175 4.175 6 C -0.156 4.156 7 C -0.125 4.125 8 C 0.302 3.698 9 O -0.465 6.465 10 N -0.362 5.362 11 C 0.059 3.941 12 C -0.163 4.163 13 C 0.018 3.982 14 N -0.332 5.332 15 C -0.393 4.393 16 H 0.084 0.916 17 C -0.246 4.246 18 N -0.582 5.582 19 Si 0.798 3.202 20 H -0.191 1.191 21 H -0.222 1.222 22 H -0.212 1.212 23 C 0.051 3.949 24 C -0.166 4.166 25 C 0.133 3.867 26 O -0.302 6.302 27 N -0.264 5.264 28 H 0.115 0.885 29 H 0.116 0.884 30 H 0.085 0.915 31 H 0.184 0.816 32 H 0.087 0.913 33 H 0.116 0.884 34 H 0.108 0.892 35 H 0.146 0.854 36 H 0.157 0.843 37 H 0.253 0.747 38 H 0.070 0.930 39 H 0.087 0.913 40 H 0.069 0.931 41 H 0.021 0.979 42 H 0.074 0.926 43 H 0.060 0.940 44 H 0.010 0.990 45 H 0.083 0.917 46 H 0.099 0.901 47 H 0.091 0.909 48 H 0.276 0.724 Dipole moment (debyes) X Y Z Total from point charges -17.249 3.347 21.999 28.155 hybrid contribution 1.574 0.052 -0.294 1.602 sum -15.675 3.399 21.705 26.988 Atomic orbital electron populations 1.20820 0.86495 1.04155 1.04320 1.21581 0.98268 0.87174 0.93339 1.22148 0.94034 1.00136 1.04325 1.20482 0.94417 0.95565 0.92411 1.20965 1.00724 0.92677 1.03117 1.20318 0.96371 0.92884 1.05984 1.20544 0.90828 1.08008 0.93100 1.21069 0.82011 0.74768 0.91995 1.90716 1.56493 1.51111 1.48163 1.46013 1.07031 1.74604 1.08588 1.20573 0.94931 0.95894 0.82698 1.22142 0.99779 0.96978 0.97368 1.20944 0.86616 0.96380 0.94226 1.44360 1.05834 1.15826 1.67201 1.19543 0.98652 0.91404 1.29720 0.91603 1.25838 1.03265 0.97091 0.98372 1.70195 1.33028 1.09473 1.45463 0.85169 0.79826 0.78333 0.76851 1.19135 1.22151 1.21192 1.20583 0.99718 0.85007 0.89549 1.22242 0.94245 1.01194 0.98913 1.19136 0.86926 0.85448 0.95210 1.84817 1.76470 1.33552 1.35377 1.66975 1.10121 1.32221 1.17066 0.88546 0.88413 0.91488 0.81607 0.91340 0.88381 0.89199 0.85394 0.84292 0.74730 0.92967 0.91339 0.93055 0.97939 0.92623 0.93960 0.98977 0.91704 0.90140 0.90917 0.72411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.37 10.17 71.24 0.72 -0.64 16 2 C 0.13 2.82 6.78 42.51 0.29 3.11 16 3 C -0.19 -3.34 9.44 22.37 0.21 -3.13 16 4 C -0.02 -0.41 5.91 -19.69 -0.12 -0.52 16 5 C -0.12 -1.55 9.67 71.23 0.69 -0.86 16 6 C -0.15 -3.33 4.40 -19.67 -0.09 -3.42 16 7 C -0.09 -1.44 5.26 29.10 0.15 -1.29 16 8 C 0.51 13.93 7.79 87.66 0.68 14.61 16 9 O -0.59 -22.52 15.70 -3.04 -0.05 -22.57 16 10 N -0.71 -17.76 5.08 -442.42 -2.25 -20.00 16 11 C 0.16 5.61 2.42 45.02 0.11 5.72 16 12 C -0.12 -4.58 5.65 30.67 0.17 -4.41 16 13 C 0.14 6.55 6.52 86.36 0.56 7.11 16 14 N -0.61 -31.28 2.99 -699.09 -2.09 -33.38 16 15 C -0.26 -14.62 9.58 84.03 0.81 -13.82 16 16 H 0.07 3.59 7.89 -2.91 -0.02 3.56 16 17 C -0.05 -2.81 4.92 84.86 0.42 -2.40 16 18 N -0.94 -55.37 11.19 21.65 0.24 -55.13 16 19 Si 0.97 44.67 29.59 68.60 2.03 46.70 16 20 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 21 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 22 H -0.29 -12.89 7.11 99.48 0.71 -12.18 16 23 C 0.18 8.52 5.30 86.36 0.46 8.97 16 24 C -0.13 -4.41 5.55 30.67 0.17 -4.24 16 25 C 0.31 8.02 7.72 84.78 0.65 8.68 16 26 O -0.49 -11.51 12.62 -89.94 -1.14 -12.65 16 27 N -0.54 -14.63 10.30 -296.97 -3.06 -17.68 16 28 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.10 0.88 8.08 -2.39 -0.02 0.87 16 30 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.17 1.81 8.06 -2.91 -0.02 1.79 16 32 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.10 0.79 8.10 -2.39 -0.02 0.77 16 34 H 0.09 0.85 6.08 -2.39 -0.01 0.83 16 35 H 0.13 1.53 7.55 -2.39 -0.02 1.52 16 36 H 0.14 1.34 6.06 -2.39 -0.01 1.33 16 37 H 0.42 7.11 8.60 -92.71 -0.80 6.31 16 38 H 0.05 2.12 7.58 -2.38 -0.02 2.10 16 39 H 0.07 2.43 8.14 -2.39 -0.02 2.42 16 40 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 41 H 0.00 0.13 8.14 -2.39 -0.02 0.11 16 42 H 0.06 2.46 7.93 -2.39 -0.02 2.45 16 43 H 0.25 14.29 8.31 -92.71 -0.77 13.52 16 44 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 45 H 0.06 3.45 6.06 -2.39 -0.01 3.44 16 46 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 47 H 0.07 2.40 8.14 -2.38 -0.02 2.38 16 48 H 0.42 4.67 9.06 -74.06 -0.67 4.00 16 Total: -1.00 -82.14 388.50 -0.89 -83.03 By element: Atomic # 1 Polarization: 18.69 SS G_CDS: -0.48 Total: 18.21 kcal Atomic # 6 Polarization: 7.57 SS G_CDS: 5.89 Total: 13.46 kcal Atomic # 7 Polarization: -119.03 SS G_CDS: -7.15 Total: -126.19 kcal Atomic # 8 Polarization: -34.04 SS G_CDS: -1.18 Total: -35.22 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.70 kcal Total: -82.14 -0.89 -83.03 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001003483963.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.970 kcal (2) G-P(sol) polarization free energy of solvation -82.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds