Wall clock time and date at job start Tue Mar 31 2020 17:56:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35912 * 117.00189 * 2 1 4 4 C 1.38856 * 120.40727 * 359.97438 * 3 2 1 5 5 N 1.31878 * 120.99672 * 179.69981 * 4 3 2 6 6 C 1.31677 * 121.94476 * 0.27595 * 5 4 3 7 7 C 1.39524 * 120.69460 * 359.97438 * 6 5 4 8 8 C 1.47850 * 120.53195 * 180.02562 * 7 6 5 9 9 O 1.21551 * 120.00159 * 132.36277 * 8 7 6 10 10 N 1.34769 * 120.00030 * 312.35445 * 8 7 6 11 11 C 1.46498 * 120.00171 * 4.54106 * 10 8 7 12 12 C 1.46501 * 120.00394 * 184.53411 * 10 8 7 13 13 C 1.53042 * 109.46340 * 240.03384 * 12 10 8 14 14 C 1.53194 * 109.31195 * 178.60001 * 13 12 10 15 15 N 1.46931 * 108.76489 * 54.65075 * 14 13 12 16 16 C 1.36939 * 120.62545 * 126.40352 * 15 14 13 17 17 H 1.07997 * 120.00476 * 324.40187 * 16 15 14 18 18 C 1.38813 * 119.99708 * 144.40624 * 16 15 14 19 19 N 1.31627 * 120.00087 * 348.48060 * 18 16 15 20 20 Si 1.86800 * 120.00125 * 168.48118 * 18 16 15 21 21 H 1.48500 * 109.47215 * 60.00042 * 20 18 16 22 22 H 1.48499 * 109.47308 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.47013 * 299.99942 * 20 18 16 24 24 C 1.46921 * 118.74156 * 306.38683 * 15 14 13 25 25 C 1.53044 * 109.45826 * 119.97499 * 12 10 8 26 26 C 1.38853 * 120.40598 * 180.22820 * 3 2 1 27 27 C 1.50696 * 120.88052 * 0.02562 * 26 3 2 28 28 H 1.09006 * 109.46564 * 60.00210 * 1 2 3 29 29 H 1.09000 * 109.47258 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46749 * 300.00224 * 1 2 3 31 31 H 1.08002 * 119.49859 * 359.97438 * 4 3 2 32 32 H 1.08008 * 119.65344 * 179.97438 * 6 5 4 33 33 H 1.08999 * 109.47625 * 85.09111 * 11 10 8 34 34 H 1.09004 * 109.47463 * 205.09677 * 11 10 8 35 35 H 1.09003 * 109.46941 * 325.09597 * 11 10 8 36 36 H 1.09003 * 109.45891 * 0.02562 * 12 10 8 37 37 H 1.09000 * 109.49513 * 298.55922 * 13 12 10 38 38 H 1.08993 * 109.49920 * 58.65675 * 13 12 10 39 39 H 1.08998 * 109.59667 * 294.86901 * 14 13 12 40 40 H 1.09002 * 109.70340 * 174.50333 * 14 13 12 41 41 H 0.96998 * 119.99909 * 179.97438 * 19 18 16 42 42 H 1.09000 * 109.58328 * 293.82009 * 24 15 14 43 43 H 1.09003 * 109.70577 * 173.46303 * 24 15 14 44 44 H 1.08998 * 109.49803 * 301.33551 * 25 12 10 45 45 H 1.08997 * 109.49632 * 61.43845 * 25 12 10 46 46 H 1.09000 * 109.47786 * 273.41233 * 27 26 3 47 47 H 1.09002 * 109.46804 * 33.40907 * 27 26 3 48 48 H 1.08999 * 109.46885 * 153.40188 * 27 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0461 1.2110 0.0000 4 6 1.2982 2.3809 -0.0005 5 7 1.8848 3.5620 0.0054 6 6 3.1955 3.6890 0.0066 7 6 4.0200 2.5635 0.0022 8 6 5.4912 2.7102 0.0042 9 8 6.1657 2.0612 0.7797 10 7 6.0845 3.5634 -0.8538 11 6 5.2678 4.4181 -1.7191 12 6 7.5461 3.6364 -0.9213 13 6 8.0023 5.0557 -0.5754 14 6 9.5325 5.1193 -0.6128 15 7 9.9936 4.6399 -1.9229 16 6 10.8306 5.4049 -2.6906 17 1 10.7277 6.4799 -2.6949 18 6 11.8114 4.7985 -3.4635 19 7 12.0898 3.5235 -3.2919 20 14 12.7362 5.7919 -4.7469 21 1 13.4450 6.9169 -4.0859 22 1 13.7229 4.9189 -5.4322 23 1 11.7754 6.3294 -5.7436 24 6 9.5399 3.3241 -2.3934 25 6 8.0096 3.2805 -2.3358 26 6 3.4322 1.2934 -0.0048 27 6 4.2811 0.0483 -0.0106 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 0.2198 2.3226 -0.0014 32 1 3.6368 4.6747 0.0111 33 1 4.9893 5.3225 -1.1782 34 1 5.8391 4.6875 -2.6075 35 1 4.3673 3.8803 -2.0155 36 1 7.9781 2.9324 -0.2100 37 1 7.5911 5.7571 -1.3013 38 1 7.6518 5.3174 0.4229 39 1 9.9440 4.4864 0.1734 40 1 9.8613 6.1478 -0.4636 41 1 12.7748 3.0997 -3.8322 42 1 9.9520 2.5448 -1.7524 43 1 9.8715 3.1664 -3.4197 44 1 7.6644 2.2785 -2.5904 45 1 7.5982 3.9988 -3.0449 46 1 4.4389 -0.2888 1.0139 47 1 3.7748 -0.7338 -0.5764 48 1 5.2433 0.2668 -0.4737 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001005583297.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:56:19 Heat of formation + Delta-G solvation = -29.178805 kcal Electronic energy + Delta-G solvation = -29334.056065 eV Core-core repulsion = 25389.481616 eV Total energy + Delta-G solvation = -3944.574449 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.23427 -40.94135 -39.26649 -38.74311 -36.66880 -34.90611 -34.35738 -32.40965 -31.65331 -31.02534 -28.99600 -28.52653 -28.03467 -27.00075 -25.11399 -23.90078 -23.66798 -23.18131 -21.11908 -20.38901 -19.09484 -18.65922 -18.61402 -17.60903 -17.43796 -17.19351 -16.89237 -16.75126 -16.13159 -15.71300 -15.38977 -15.17014 -14.96986 -14.85526 -14.73701 -14.52520 -14.16389 -14.10681 -13.97095 -13.87897 -13.57069 -13.21755 -13.09842 -12.97874 -12.96939 -12.72996 -12.62762 -12.54992 -12.35125 -12.10275 -12.00801 -11.90991 -11.54354 -11.40897 -11.22713 -10.61555 -10.56757 -10.45585 -9.67006 -9.51605 -8.60133 -7.87700 -5.42954 -0.41030 0.07653 1.46753 1.48727 1.50429 1.57311 1.80747 2.24727 2.51216 2.58068 3.23098 3.29495 3.40296 3.47257 3.59329 3.66529 3.82515 3.99348 4.03932 4.13729 4.19912 4.31755 4.37224 4.41803 4.43645 4.46290 4.58487 4.60659 4.63335 4.66114 4.70043 4.78694 4.83521 4.91622 4.98569 5.02473 5.06983 5.07248 5.14640 5.30052 5.31201 5.42818 5.52171 5.65199 5.66969 6.14306 6.29184 6.42866 6.71950 6.98033 7.15645 7.82353 8.39809 9.18872 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.026579 B = 0.002488 C = 0.002432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.227994 B =11250.474232 C =11508.969366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.320 6.320 3 C 0.074 3.926 4 C 0.043 3.957 5 N -0.463 5.463 6 C 0.100 3.900 7 C -0.153 4.153 8 C 0.562 3.438 9 O -0.568 6.568 10 N -0.595 5.595 11 C 0.067 3.933 12 C 0.156 3.844 13 C -0.120 4.120 14 C 0.143 3.857 15 N -0.607 5.607 16 C -0.267 4.267 17 H 0.068 0.932 18 C -0.046 4.046 19 N -0.936 5.936 20 Si 0.970 3.030 21 H -0.274 1.274 22 H -0.297 1.297 23 H -0.274 1.274 24 C 0.187 3.813 25 C -0.128 4.128 26 C -0.044 4.044 27 C -0.102 4.102 28 H 0.073 0.927 29 H 0.122 0.878 30 H 0.072 0.928 31 H 0.195 0.805 32 H 0.182 0.818 33 H 0.085 0.915 34 H 0.082 0.918 35 H 0.079 0.921 36 H 0.068 0.932 37 H 0.076 0.924 38 H 0.073 0.927 39 H 0.005 0.995 40 H 0.064 0.936 41 H 0.251 0.749 42 H -0.009 1.009 43 H 0.051 0.949 44 H 0.056 0.944 45 H 0.071 0.929 46 H 0.078 0.922 47 H 0.087 0.913 48 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.396 -2.854 4.584 27.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.232 6.232 3 C 0.026 3.974 4 C -0.115 4.115 5 N -0.172 5.172 6 C -0.058 4.058 7 C -0.158 4.158 8 C 0.350 3.650 9 O -0.448 6.448 10 N -0.325 5.325 11 C -0.075 4.075 12 C 0.053 3.947 13 C -0.160 4.160 14 C 0.018 3.982 15 N -0.331 5.331 16 C -0.397 4.397 17 H 0.085 0.915 18 C -0.242 4.242 19 N -0.581 5.581 20 Si 0.798 3.202 21 H -0.200 1.200 22 H -0.223 1.223 23 H -0.199 1.199 24 C 0.060 3.940 25 C -0.168 4.168 26 C -0.053 4.053 27 C -0.159 4.159 28 H 0.092 0.908 29 H 0.140 0.860 30 H 0.090 0.910 31 H 0.212 0.788 32 H 0.199 0.801 33 H 0.103 0.897 34 H 0.101 0.899 35 H 0.098 0.902 36 H 0.086 0.914 37 H 0.094 0.906 38 H 0.091 0.909 39 H 0.023 0.977 40 H 0.082 0.918 41 H 0.059 0.941 42 H 0.009 0.991 43 H 0.070 0.930 44 H 0.075 0.925 45 H 0.090 0.910 46 H 0.096 0.904 47 H 0.106 0.894 48 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -27.367 -2.738 4.897 27.936 hybrid contribution 1.511 -0.609 -0.579 1.729 sum -25.856 -3.347 4.318 26.427 Atomic orbital electron populations 1.23518 0.75485 1.06327 1.02942 1.86098 1.24052 1.24882 1.88189 1.19696 0.91517 0.87077 0.99145 1.23570 1.02124 0.86219 0.99575 1.67651 1.11504 1.26588 1.11483 1.23181 0.88451 0.98429 0.95752 1.20597 0.93540 0.94809 1.06824 1.18355 0.87299 0.79114 0.80249 1.90777 1.65932 1.47478 1.40641 1.47989 1.06842 1.39222 1.38458 1.22216 0.95525 0.94697 0.95068 1.20860 0.78295 0.98192 0.97353 1.22161 0.96735 0.95431 1.01697 1.21015 0.92554 0.97981 0.86700 1.44231 1.54326 1.18262 1.16249 1.19425 1.08420 0.90792 1.21042 0.91459 1.26074 0.97654 0.97274 1.03175 1.70158 1.33848 1.12313 1.41798 0.85317 0.78053 0.77792 0.79088 1.19981 1.22283 1.19926 1.20410 0.89571 0.85989 0.98004 1.22313 0.97713 1.00657 0.96138 1.19852 0.92098 0.95302 0.98041 1.20615 0.97986 0.94019 1.03264 0.90830 0.85953 0.90984 0.78808 0.80111 0.89701 0.89929 0.90217 0.91356 0.90555 0.90875 0.97657 0.91792 0.94054 0.99111 0.93049 0.92498 0.91027 0.90387 0.89426 0.92708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.07 9.82 113.37 1.11 1.18 16 2 O -0.32 -5.09 9.73 -92.56 -0.90 -5.99 16 3 C 0.07 1.40 6.68 22.57 0.15 1.55 16 4 C 0.04 0.69 10.21 84.83 0.87 1.55 16 5 N -0.46 -9.03 10.34 -194.39 -2.01 -11.04 16 6 C 0.10 2.04 8.93 85.03 0.76 2.80 16 7 C -0.15 -3.80 4.95 -20.01 -0.10 -3.89 16 8 C 0.56 17.16 6.44 86.79 0.56 17.72 16 9 O -0.57 -21.83 14.97 -3.88 -0.06 -21.89 16 10 N -0.59 -16.67 2.76 -825.84 -2.28 -18.95 16 11 C 0.07 1.32 8.10 127.77 1.04 2.35 16 12 C 0.16 5.39 2.47 45.02 0.11 5.50 16 13 C -0.12 -3.98 5.34 30.67 0.16 -3.81 16 14 C 0.14 6.01 6.52 86.36 0.56 6.57 16 15 N -0.61 -30.45 2.96 -699.08 -2.07 -32.52 16 16 C -0.27 -14.47 9.52 84.03 0.80 -13.67 16 17 H 0.07 3.52 7.85 -2.91 -0.02 3.49 16 18 C -0.05 -2.54 5.00 84.86 0.42 -2.12 16 19 N -0.94 -55.90 11.44 21.65 0.25 -55.65 16 20 Si 0.97 44.36 29.57 68.60 2.03 46.39 16 21 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 22 H -0.30 -13.74 7.11 99.48 0.71 -13.04 16 23 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 24 C 0.19 9.12 5.23 86.36 0.45 9.57 16 25 C -0.13 -4.82 5.32 30.67 0.16 -4.65 16 26 C -0.04 -1.06 5.96 -19.30 -0.12 -1.17 16 27 C -0.10 -2.51 8.96 71.23 0.64 -1.87 16 28 H 0.07 0.25 7.67 -2.38 -0.02 0.23 16 29 H 0.12 0.32 8.14 -2.39 -0.02 0.30 16 30 H 0.07 0.27 7.68 -2.39 -0.02 0.25 16 31 H 0.20 1.66 6.30 -2.91 -0.02 1.64 16 32 H 0.18 2.96 6.18 -2.91 -0.02 2.94 16 33 H 0.08 1.28 7.05 -2.39 -0.02 1.26 16 34 H 0.08 1.69 6.46 -2.38 -0.02 1.67 16 35 H 0.08 1.40 6.21 -2.39 -0.01 1.39 16 36 H 0.07 2.79 6.91 -2.39 -0.02 2.78 16 37 H 0.08 2.34 7.72 -2.39 -0.02 2.32 16 38 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 39 H 0.01 0.24 8.14 -2.39 -0.02 0.22 16 40 H 0.06 2.57 7.93 -2.39 -0.02 2.55 16 41 H 0.25 14.52 8.31 -92.71 -0.77 13.75 16 42 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 43 H 0.05 2.80 6.48 -2.39 -0.02 2.78 16 44 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 45 H 0.07 2.52 6.72 -2.39 -0.02 2.51 16 46 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 47 H 0.09 1.82 7.72 -2.39 -0.02 1.81 16 48 H 0.05 1.57 6.64 -2.39 -0.02 1.55 16 Total: -1.00 -72.28 375.23 3.52 -68.76 By element: Atomic # 1 Polarization: 12.33 SS G_CDS: 0.97 Total: 13.30 kcal Atomic # 6 Polarization: 10.01 SS G_CDS: 7.58 Total: 17.60 kcal Atomic # 7 Polarization: -112.05 SS G_CDS: -6.11 Total: -118.16 kcal Atomic # 8 Polarization: -26.93 SS G_CDS: -0.96 Total: -27.89 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.39 kcal Total: -72.28 3.52 -68.76 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001005583297.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.585 kcal (2) G-P(sol) polarization free energy of solvation -72.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds