Wall clock time and date at job start Tue Mar 31 2020 17:37:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38002 * 120.82181 * 2 1 4 4 C 1.39131 * 119.26495 * 179.97438 * 3 2 1 5 5 O 1.35496 * 119.52148 * 179.97438 * 4 3 2 6 6 N 1.32436 * 120.94649 * 359.97438 * 4 3 2 7 7 C 1.31631 * 121.80402 * 359.72845 * 6 4 3 8 8 C 1.50701 * 119.69049 * 180.26827 * 7 6 4 9 9 C 1.39573 * 120.62570 * 0.53512 * 7 6 4 10 10 C 1.47609 * 120.50078 * 179.75114 * 9 7 6 11 11 O 1.21579 * 120.00103 * 269.72386 * 10 9 7 12 12 N 1.34775 * 120.00097 * 89.72218 * 10 9 7 13 13 C 1.46500 * 120.00014 * 359.97438 * 12 10 9 14 14 C 1.46507 * 120.00359 * 180.02562 * 12 10 9 15 15 C 1.53036 * 109.45897 * 240.00340 * 14 12 10 16 16 C 1.53191 * 109.31166 * 178.61271 * 15 14 12 17 17 N 1.46926 * 108.89452 * 54.56289 * 16 15 14 18 18 C 1.36934 * 120.63630 * 126.46229 * 17 16 15 19 19 H 1.08000 * 119.99464 * 331.92669 * 18 17 16 20 20 C 1.38810 * 120.00385 * 151.92945 * 18 17 16 21 21 N 1.31619 * 119.99689 * 343.17004 * 20 18 17 22 22 Si 1.86795 * 119.99988 * 163.17171 * 20 18 17 23 23 H 1.48503 * 109.47611 * 359.97438 * 22 20 18 24 24 H 1.48502 * 109.47271 * 120.00121 * 22 20 18 25 25 H 1.48496 * 109.47355 * 239.99904 * 22 20 18 26 26 C 1.46973 * 118.71425 * 306.64410 * 17 16 15 27 27 C 1.53043 * 109.45897 * 119.93020 * 14 12 10 28 28 H 1.09001 * 109.46543 * 270.02319 * 1 2 3 29 29 H 1.08999 * 109.47283 * 30.01914 * 1 2 3 30 30 H 1.08996 * 109.47136 * 150.02036 * 1 2 3 31 31 H 1.07997 * 120.36561 * 0.02562 * 3 2 1 32 32 H 0.96700 * 113.99946 * 90.00272 * 5 4 3 33 33 H 1.08996 * 109.46885 * 270.26840 * 8 7 6 34 34 H 1.09001 * 109.47032 * 30.26445 * 8 7 6 35 35 H 1.08999 * 109.47214 * 150.27060 * 8 7 6 36 36 H 1.08994 * 109.47201 * 270.00443 * 13 12 10 37 37 H 1.09000 * 109.46830 * 30.00191 * 13 12 10 38 38 H 1.08996 * 109.47301 * 149.99881 * 13 12 10 39 39 H 1.08996 * 109.45453 * 359.97332 * 14 12 10 40 40 H 1.09001 * 109.50071 * 58.66060 * 15 14 12 41 41 H 1.09005 * 109.49477 * 298.56396 * 15 14 12 42 42 H 1.09000 * 109.58954 * 174.41929 * 16 15 14 43 43 H 1.08996 * 109.58649 * 294.70243 * 16 15 14 44 44 H 0.97000 * 119.99637 * 180.02562 * 21 20 18 45 45 H 1.09000 * 109.46458 * 293.56938 * 26 17 16 46 46 H 1.08992 * 109.71060 * 173.28601 * 26 17 16 47 47 H 1.08995 * 109.49931 * 301.34255 * 27 14 12 48 48 H 1.09003 * 109.49592 * 61.43695 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2141 1.1851 0.0000 4 6 3.6049 1.1473 0.0005 5 8 4.3043 2.3078 0.0000 6 7 4.2548 -0.0066 0.0016 7 6 3.6205 -1.1600 0.0074 8 6 4.4080 -2.4449 0.0144 9 6 2.2255 -1.2044 0.0016 10 6 1.5171 -2.4994 0.0026 11 8 1.2254 -3.0336 -1.0498 12 7 1.1937 -3.0896 1.1703 13 6 1.5456 -2.4462 2.4385 14 6 0.4910 -4.3752 1.1714 15 6 -0.8502 -4.2225 1.8924 16 6 -1.5971 -5.5597 1.8613 17 7 -0.7273 -6.6037 2.4200 18 6 -1.1637 -7.4015 3.4438 19 1 -1.9010 -7.0308 4.1404 20 6 -0.6585 -8.6865 3.5862 21 7 -0.0291 -9.2610 2.5831 22 14 -0.8719 -9.6003 5.2013 23 1 -1.6087 -8.7412 6.1627 24 1 -1.6385 -10.8501 4.9654 25 1 0.4623 -9.9361 5.7601 26 6 0.6217 -6.7723 1.8615 27 6 1.3438 -5.4216 1.8926 28 1 -0.3632 0.0004 1.0277 29 1 -0.3634 0.8898 -0.5141 30 1 -0.3633 -0.8901 -0.5135 31 1 1.6936 2.1314 0.0004 32 1 4.5070 2.6452 0.8833 33 1 4.6023 -2.7575 -1.0115 34 1 5.3545 -2.2881 0.5319 35 1 3.8368 -3.2183 0.5279 36 1 2.5343 -2.7801 2.7532 37 1 1.5523 -1.3641 2.3073 38 1 0.8122 -2.7156 3.1984 39 1 0.3167 -4.6945 0.1439 40 1 -1.4476 -3.4604 1.3920 41 1 -0.6755 -3.9273 2.9270 42 1 -2.5065 -5.4842 2.4575 43 1 -1.8546 -5.8106 0.8323 44 1 0.3237 -10.1591 2.6825 45 1 0.5474 -7.1234 0.8323 46 1 1.1776 -7.4975 2.4557 47 1 2.3079 -5.5128 1.3924 48 1 1.4978 -5.1151 2.9272 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001006436889.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:37:15 Heat of formation + Delta-G solvation = -18.378530 kcal Electronic energy + Delta-G solvation = -29750.893550 eV Core-core repulsion = 25806.787436 eV Total energy + Delta-G solvation = -3944.106114 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.28262 -39.69501 -37.77492 -37.14029 -35.15269 -34.60124 -32.71516 -31.83477 -30.25857 -29.64010 -28.36850 -27.99336 -26.93974 -25.24394 -23.86092 -22.24770 -22.02975 -21.60455 -19.87493 -18.94183 -18.69584 -17.51297 -17.37549 -16.79802 -16.40616 -15.92994 -15.02291 -14.85030 -14.51141 -14.37634 -13.99738 -13.78477 -13.68574 -13.59861 -13.35100 -13.27690 -13.06121 -12.75175 -12.62004 -12.54612 -12.48850 -12.37400 -12.25372 -12.15387 -11.91857 -11.52844 -11.16990 -10.86377 -10.76858 -10.43316 -10.24245 -10.16517 -10.11082 -9.85186 -9.78387 -9.68339 -9.49623 -9.05892 -8.59321 -8.38982 -6.72289 -5.82567 -3.25442 0.48647 0.81938 2.50600 2.88305 3.17164 3.34320 3.34529 3.42559 3.44336 4.14565 4.19773 4.35976 4.46133 4.70823 4.85675 5.00397 5.07086 5.17663 5.22092 5.24787 5.28487 5.32297 5.38418 5.41525 5.46534 5.55403 5.60390 5.67095 5.68248 5.80529 5.84598 5.86187 6.01591 6.12548 6.18119 6.26004 6.42125 6.51575 6.56531 6.71692 6.82025 6.90524 7.09473 7.29874 7.41233 7.56860 7.62136 7.76375 8.13516 8.41032 9.17151 9.80277 10.37087 11.26266 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.024294 B = 0.002745 C = 0.002660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.286670 B =10198.411830 C =10524.881656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.009 3.991 3 C -0.196 4.196 4 C 0.327 3.673 5 O -0.481 6.481 6 N -0.506 5.506 7 C 0.194 3.806 8 C -0.113 4.113 9 C -0.181 4.181 10 C 0.568 3.432 11 O -0.529 6.529 12 N -0.598 5.598 13 C 0.077 3.923 14 C 0.144 3.856 15 C -0.138 4.138 16 C 0.148 3.852 17 N -0.592 5.592 18 C -0.253 4.253 19 H 0.066 0.934 20 C 0.003 3.997 21 N -0.901 5.901 22 Si 0.902 3.098 23 H -0.278 1.278 24 H -0.290 1.290 25 H -0.289 1.289 26 C 0.174 3.826 27 C -0.145 4.145 28 H 0.085 0.915 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.145 0.855 32 H 0.402 0.598 33 H 0.088 0.912 34 H 0.085 0.915 35 H 0.080 0.920 36 H 0.057 0.943 37 H 0.061 0.939 38 H 0.080 0.920 39 H 0.097 0.903 40 H 0.052 0.948 41 H 0.061 0.939 42 H 0.057 0.943 43 H 0.020 0.980 44 H 0.254 0.746 45 H 0.021 0.979 46 H 0.091 0.909 47 H 0.051 0.949 48 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.538 21.581 -1.217 22.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.001 3.999 3 C -0.217 4.217 4 C 0.149 3.851 5 O -0.288 6.288 6 N -0.226 5.226 7 C 0.055 3.945 8 C -0.170 4.170 9 C -0.186 4.186 10 C 0.354 3.646 11 O -0.406 6.406 12 N -0.329 5.329 13 C -0.066 4.066 14 C 0.042 3.958 15 C -0.178 4.178 16 C 0.021 3.979 17 N -0.315 5.315 18 C -0.383 4.383 19 H 0.084 0.916 20 C -0.196 4.196 21 N -0.545 5.545 22 Si 0.732 3.268 23 H -0.203 1.203 24 H -0.217 1.217 25 H -0.216 1.216 26 C 0.047 3.953 27 C -0.185 4.185 28 H 0.103 0.897 29 H 0.098 0.902 30 H 0.098 0.902 31 H 0.163 0.837 32 H 0.260 0.740 33 H 0.106 0.894 34 H 0.104 0.896 35 H 0.099 0.901 36 H 0.075 0.925 37 H 0.080 0.920 38 H 0.099 0.901 39 H 0.115 0.885 40 H 0.071 0.929 41 H 0.080 0.920 42 H 0.075 0.925 43 H 0.038 0.962 44 H 0.064 0.936 45 H 0.039 0.961 46 H 0.109 0.891 47 H 0.070 0.930 48 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 6.296 21.131 -2.365 22.176 hybrid contribution -0.725 -0.194 1.320 1.519 sum 5.570 20.937 -1.045 21.691 Atomic orbital electron populations 1.20949 0.89253 1.04333 1.03586 1.20206 0.97016 0.90810 0.91898 1.21857 0.93712 0.99282 1.06865 1.19226 0.87019 0.85030 0.93838 1.84734 1.76022 1.34058 1.34027 1.66982 1.41853 0.97813 1.15940 1.21043 0.89159 0.93123 0.91134 1.20878 1.00378 0.91530 1.04188 1.20753 0.94894 0.94595 1.08383 1.17921 0.78659 0.83874 0.84171 1.90824 1.54228 1.64579 1.30976 1.48178 1.56970 1.22463 1.05331 1.21742 1.01404 0.97077 0.86375 1.21276 0.91728 0.80899 1.01851 1.22377 0.95602 0.99882 0.99930 1.20853 0.93092 0.87189 0.96782 1.44090 1.10185 1.37337 1.39872 1.19203 1.23150 0.93067 1.02860 0.91625 1.25061 1.01164 0.95943 0.97429 1.70037 1.41654 1.13903 1.28955 0.86238 0.77422 0.79611 0.83569 1.20275 1.21708 1.21566 1.20759 0.85427 0.91488 0.97580 1.22557 0.98142 0.98331 0.99447 0.89695 0.90215 0.90215 0.83682 0.73999 0.89373 0.89624 0.90090 0.92483 0.91989 0.90119 0.88515 0.92911 0.91988 0.92451 0.96188 0.93611 0.96120 0.89132 0.93006 0.92338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.10 9.69 36.00 0.35 -0.75 16 2 C 0.01 0.09 5.53 -103.96 -0.57 -0.48 16 3 C -0.20 -1.81 9.73 -39.34 -0.38 -2.19 16 4 C 0.33 3.47 7.74 -16.96 -0.13 3.34 16 5 O -0.48 -4.13 13.55 -18.18 -0.25 -4.37 16 6 N -0.51 -6.31 10.28 -9.20 -0.09 -6.41 16 7 C 0.19 2.43 6.82 -82.18 -0.56 1.86 16 8 C -0.11 -1.26 9.78 36.01 0.35 -0.91 16 9 C -0.18 -2.29 3.93 -104.82 -0.41 -2.71 16 10 C 0.57 8.44 4.19 -12.44 -0.05 8.39 16 11 O -0.53 -9.90 16.43 5.30 0.09 -9.81 16 12 N -0.60 -8.30 2.76 -175.09 -0.48 -8.79 16 13 C 0.08 0.84 9.35 59.85 0.56 1.40 16 14 C 0.14 2.41 2.48 -67.89 -0.17 2.24 16 15 C -0.14 -2.26 5.31 -26.61 -0.14 -2.40 16 16 C 0.15 2.98 6.51 -3.71 -0.02 2.96 16 17 N -0.59 -14.29 3.00 -172.29 -0.52 -14.81 16 18 C -0.25 -6.73 9.58 -15.06 -0.14 -6.87 16 19 H 0.07 1.71 7.88 -52.49 -0.41 1.30 16 20 C 0.00 0.07 4.92 -17.43 -0.09 -0.01 16 21 N -0.90 -25.69 11.20 55.49 0.62 -25.07 16 22 Si 0.90 21.18 29.59 -169.99 -5.03 16.15 16 23 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 24 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 25 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 26 C 0.17 4.02 5.30 -3.69 -0.02 4.00 16 27 C -0.14 -2.63 5.34 -26.61 -0.14 -2.77 16 28 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.08 0.54 8.10 -51.93 -0.42 0.12 16 30 H 0.08 0.88 7.19 -51.93 -0.37 0.51 16 31 H 0.15 0.95 8.06 -52.49 -0.42 0.53 16 32 H 0.40 1.31 9.06 45.56 0.41 1.72 16 33 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.08 0.95 7.06 -51.93 -0.37 0.59 16 36 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.06 0.58 6.55 -51.93 -0.34 0.24 16 38 H 0.08 0.87 6.46 -51.93 -0.34 0.53 16 39 H 0.10 1.86 6.90 -51.93 -0.36 1.50 16 40 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.06 0.99 6.73 -51.93 -0.35 0.64 16 42 H 0.06 1.12 7.93 -51.93 -0.41 0.71 16 43 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 45 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 46 H 0.09 2.34 6.07 -51.93 -0.32 2.03 16 47 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 48 H 0.06 1.04 7.72 -51.93 -0.40 0.64 16 LS Contribution 383.46 15.07 5.78 5.78 Total: -1.00 -33.07 383.46 -8.07 -41.14 By element: Atomic # 1 Polarization: 7.71 SS G_CDS: -6.61 Total: 1.10 kcal Atomic # 6 Polarization: 6.67 SS G_CDS: -1.58 Total: 5.09 kcal Atomic # 7 Polarization: -54.60 SS G_CDS: -0.47 Total: -55.08 kcal Atomic # 8 Polarization: -14.02 SS G_CDS: -0.16 Total: -14.18 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.03 Total: 16.15 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -33.07 -8.07 -41.14 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001006436889.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.763 kcal (2) G-P(sol) polarization free energy of solvation -33.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds