Wall clock time and date at job start Tue Mar 31 2020 17:37:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38002 * 120.82181 * 2 1 4 4 C 1.39131 * 119.26495 * 179.97438 * 3 2 1 5 5 O 1.35496 * 119.52148 * 179.97438 * 4 3 2 6 6 N 1.32436 * 120.94649 * 359.97438 * 4 3 2 7 7 C 1.31631 * 121.80402 * 359.72845 * 6 4 3 8 8 C 1.50701 * 119.69049 * 180.26827 * 7 6 4 9 9 C 1.39573 * 120.62570 * 0.53512 * 7 6 4 10 10 C 1.47609 * 120.50078 * 179.75114 * 9 7 6 11 11 O 1.21579 * 120.00103 * 269.72386 * 10 9 7 12 12 N 1.34775 * 120.00097 * 89.72218 * 10 9 7 13 13 C 1.46500 * 120.00014 * 359.97438 * 12 10 9 14 14 C 1.46507 * 120.00359 * 180.02562 * 12 10 9 15 15 C 1.53036 * 109.45897 * 240.00340 * 14 12 10 16 16 C 1.53191 * 109.31166 * 178.61271 * 15 14 12 17 17 N 1.46926 * 108.89452 * 54.56289 * 16 15 14 18 18 C 1.36934 * 120.63630 * 126.46229 * 17 16 15 19 19 H 1.08000 * 119.99464 * 331.92669 * 18 17 16 20 20 C 1.38810 * 120.00385 * 151.92945 * 18 17 16 21 21 N 1.31619 * 119.99689 * 343.17004 * 20 18 17 22 22 Si 1.86795 * 119.99988 * 163.17171 * 20 18 17 23 23 H 1.48503 * 109.47611 * 359.97438 * 22 20 18 24 24 H 1.48502 * 109.47271 * 120.00121 * 22 20 18 25 25 H 1.48496 * 109.47355 * 239.99904 * 22 20 18 26 26 C 1.46973 * 118.71425 * 306.64410 * 17 16 15 27 27 C 1.53043 * 109.45897 * 119.93020 * 14 12 10 28 28 H 1.09001 * 109.46543 * 270.02319 * 1 2 3 29 29 H 1.08999 * 109.47283 * 30.01914 * 1 2 3 30 30 H 1.08996 * 109.47136 * 150.02036 * 1 2 3 31 31 H 1.07997 * 120.36561 * 0.02562 * 3 2 1 32 32 H 0.96700 * 113.99946 * 90.00272 * 5 4 3 33 33 H 1.08996 * 109.46885 * 270.26840 * 8 7 6 34 34 H 1.09001 * 109.47032 * 30.26445 * 8 7 6 35 35 H 1.08999 * 109.47214 * 150.27060 * 8 7 6 36 36 H 1.08994 * 109.47201 * 270.00443 * 13 12 10 37 37 H 1.09000 * 109.46830 * 30.00191 * 13 12 10 38 38 H 1.08996 * 109.47301 * 149.99881 * 13 12 10 39 39 H 1.08996 * 109.45453 * 359.97332 * 14 12 10 40 40 H 1.09001 * 109.50071 * 58.66060 * 15 14 12 41 41 H 1.09005 * 109.49477 * 298.56396 * 15 14 12 42 42 H 1.09000 * 109.58954 * 174.41929 * 16 15 14 43 43 H 1.08996 * 109.58649 * 294.70243 * 16 15 14 44 44 H 0.97000 * 119.99637 * 180.02562 * 21 20 18 45 45 H 1.09000 * 109.46458 * 293.56938 * 26 17 16 46 46 H 1.08992 * 109.71060 * 173.28601 * 26 17 16 47 47 H 1.08995 * 109.49931 * 301.34255 * 27 14 12 48 48 H 1.09003 * 109.49592 * 61.43695 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2141 1.1851 0.0000 4 6 3.6049 1.1473 0.0005 5 8 4.3043 2.3078 0.0000 6 7 4.2548 -0.0066 0.0016 7 6 3.6205 -1.1600 0.0074 8 6 4.4080 -2.4449 0.0144 9 6 2.2255 -1.2044 0.0016 10 6 1.5171 -2.4994 0.0026 11 8 1.2254 -3.0336 -1.0498 12 7 1.1937 -3.0896 1.1703 13 6 1.5456 -2.4462 2.4385 14 6 0.4910 -4.3752 1.1714 15 6 -0.8502 -4.2225 1.8924 16 6 -1.5971 -5.5597 1.8613 17 7 -0.7273 -6.6037 2.4200 18 6 -1.1637 -7.4015 3.4438 19 1 -1.9010 -7.0308 4.1404 20 6 -0.6585 -8.6865 3.5862 21 7 -0.0291 -9.2610 2.5831 22 14 -0.8719 -9.6003 5.2013 23 1 -1.6087 -8.7412 6.1627 24 1 -1.6385 -10.8501 4.9654 25 1 0.4623 -9.9361 5.7601 26 6 0.6217 -6.7723 1.8615 27 6 1.3438 -5.4216 1.8926 28 1 -0.3632 0.0004 1.0277 29 1 -0.3634 0.8898 -0.5141 30 1 -0.3633 -0.8901 -0.5135 31 1 1.6936 2.1314 0.0004 32 1 4.5070 2.6452 0.8833 33 1 4.6023 -2.7575 -1.0115 34 1 5.3545 -2.2881 0.5319 35 1 3.8368 -3.2183 0.5279 36 1 2.5343 -2.7801 2.7532 37 1 1.5523 -1.3641 2.3073 38 1 0.8122 -2.7156 3.1984 39 1 0.3167 -4.6945 0.1439 40 1 -1.4476 -3.4604 1.3920 41 1 -0.6755 -3.9273 2.9270 42 1 -2.5065 -5.4842 2.4575 43 1 -1.8546 -5.8106 0.8323 44 1 0.3237 -10.1591 2.6825 45 1 0.5474 -7.1234 0.8323 46 1 1.1776 -7.4975 2.4557 47 1 2.3079 -5.5128 1.3924 48 1 1.4978 -5.1151 2.9272 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001006436889.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:37:14 Heat of formation + Delta-G solvation = -42.447998 kcal Electronic energy + Delta-G solvation = -29751.937280 eV Core-core repulsion = 25806.787436 eV Total energy + Delta-G solvation = -3945.149844 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.20554 -40.78753 -39.07759 -38.10977 -36.59787 -35.40151 -34.33194 -32.93135 -31.85765 -31.30520 -29.09116 -28.91456 -28.01706 -26.90885 -24.98855 -23.87819 -23.48050 -22.40542 -21.18659 -20.36397 -19.42763 -18.79771 -18.37214 -18.27688 -17.64022 -16.85375 -16.69071 -16.03164 -15.82488 -15.38885 -15.25909 -15.16699 -14.87632 -14.72122 -14.48216 -14.29114 -14.18254 -14.12294 -13.92960 -13.75176 -13.37818 -13.23355 -13.18332 -13.13172 -13.02050 -12.95692 -12.63980 -12.61904 -12.49900 -12.11550 -11.95344 -11.87943 -11.48661 -11.37393 -11.16013 -10.63535 -10.56680 -10.51527 -9.89256 -9.68570 -8.70511 -7.86973 -5.32949 -0.33214 0.02854 1.37166 1.47952 1.50148 1.60455 1.84160 2.34040 2.52375 2.56003 3.29233 3.31557 3.36362 3.48971 3.66108 3.87757 3.94875 4.05382 4.16623 4.19522 4.26745 4.32649 4.38217 4.46561 4.51037 4.53416 4.56539 4.62997 4.66367 4.70363 4.81003 4.87404 4.88697 4.96017 5.02992 5.04534 5.08380 5.11748 5.14490 5.30685 5.38972 5.46030 5.53478 5.65363 5.70748 6.28998 6.39507 6.55880 6.79793 6.99017 7.14622 7.84798 8.37692 9.20396 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.024294 B = 0.002745 C = 0.002660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.286670 B =10198.411830 C =10524.881656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.009 3.991 3 C -0.184 4.184 4 C 0.328 3.672 5 O -0.486 6.486 6 N -0.528 5.528 7 C 0.186 3.814 8 C -0.111 4.111 9 C -0.199 4.199 10 C 0.574 3.426 11 O -0.576 6.576 12 N -0.591 5.591 13 C 0.074 3.926 14 C 0.154 3.846 15 C -0.121 4.121 16 C 0.143 3.857 17 N -0.608 5.608 18 C -0.259 4.259 19 H 0.072 0.928 20 C -0.052 4.052 21 N -0.937 5.937 22 Si 0.968 3.032 23 H -0.263 1.263 24 H -0.296 1.296 25 H -0.291 1.291 26 C 0.182 3.818 27 C -0.127 4.127 28 H 0.103 0.897 29 H 0.103 0.897 30 H 0.053 0.947 31 H 0.179 0.821 32 H 0.425 0.575 33 H 0.082 0.918 34 H 0.098 0.902 35 H 0.071 0.929 36 H 0.064 0.936 37 H 0.082 0.918 38 H 0.088 0.912 39 H 0.067 0.933 40 H 0.075 0.925 41 H 0.076 0.924 42 H 0.064 0.936 43 H 0.007 0.993 44 H 0.249 0.751 45 H -0.011 1.011 46 H 0.059 0.941 47 H 0.057 0.943 48 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.325 25.033 0.462 25.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.001 3.999 3 C -0.205 4.205 4 C 0.149 3.851 5 O -0.297 6.297 6 N -0.248 5.248 7 C 0.047 3.953 8 C -0.168 4.168 9 C -0.204 4.204 10 C 0.362 3.638 11 O -0.456 6.456 12 N -0.322 5.322 13 C -0.068 4.068 14 C 0.051 3.949 15 C -0.160 4.160 16 C 0.017 3.983 17 N -0.332 5.332 18 C -0.389 4.389 19 H 0.090 0.910 20 C -0.247 4.247 21 N -0.584 5.584 22 Si 0.796 3.204 23 H -0.187 1.187 24 H -0.223 1.223 25 H -0.217 1.217 26 C 0.056 3.944 27 C -0.167 4.167 28 H 0.122 0.878 29 H 0.122 0.878 30 H 0.072 0.928 31 H 0.196 0.804 32 H 0.287 0.713 33 H 0.100 0.900 34 H 0.117 0.883 35 H 0.090 0.910 36 H 0.083 0.917 37 H 0.101 0.899 38 H 0.106 0.894 39 H 0.086 0.914 40 H 0.094 0.906 41 H 0.095 0.905 42 H 0.083 0.917 43 H 0.025 0.975 44 H 0.058 0.942 45 H 0.007 0.993 46 H 0.078 0.922 47 H 0.076 0.924 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 6.085 24.648 -0.641 25.396 hybrid contribution -0.651 -1.156 0.745 1.521 sum 5.435 23.492 0.105 24.113 Atomic orbital electron populations 1.20999 0.87983 1.04206 1.04717 1.20452 0.97926 0.90405 0.91073 1.22108 0.93108 1.00027 1.05212 1.19490 0.87795 0.85014 0.92770 1.84690 1.75835 1.33049 1.36172 1.66989 1.42478 0.98343 1.17031 1.21067 0.89176 0.93468 0.91556 1.20856 1.00868 0.91196 1.03892 1.20581 0.94977 0.94004 1.10853 1.18221 0.77809 0.84329 0.83435 1.90799 1.56158 1.65996 1.32684 1.48049 1.56299 1.21270 1.06534 1.21964 1.01967 0.98167 0.84718 1.20875 0.92078 0.81991 0.99921 1.22168 0.94945 0.97944 1.00987 1.21000 0.93465 0.87995 0.95814 1.44344 1.11079 1.37940 1.39829 1.19565 1.22654 0.93326 1.03336 0.91040 1.25835 1.01579 0.96966 1.00353 1.70203 1.43226 1.14016 1.30924 0.85205 0.77078 0.78091 0.80044 1.18710 1.22308 1.21744 1.20502 0.85600 0.93456 0.94887 1.22279 0.97950 0.96022 1.00443 0.87837 0.87802 0.92833 0.80387 0.71257 0.89968 0.88282 0.91007 0.91722 0.89902 0.89381 0.91430 0.90608 0.90526 0.91723 0.97538 0.94161 0.99328 0.92249 0.92384 0.91190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.79 9.69 71.24 0.69 -1.10 16 2 C 0.01 0.17 5.53 -19.43 -0.11 0.06 16 3 C -0.18 -2.72 9.73 22.43 0.22 -2.50 16 4 C 0.33 6.01 7.74 84.82 0.66 6.67 16 5 O -0.49 -6.78 13.55 -87.97 -1.19 -7.97 16 6 N -0.53 -12.23 10.28 -295.88 -3.04 -15.27 16 7 C 0.19 4.44 6.82 42.91 0.29 4.73 16 8 C -0.11 -2.47 9.78 71.24 0.70 -1.78 16 9 C -0.20 -4.77 3.93 -19.99 -0.08 -4.85 16 10 C 0.57 16.85 4.19 86.72 0.36 17.21 16 11 O -0.58 -22.15 16.43 -3.96 -0.07 -22.21 16 12 N -0.59 -15.73 2.76 -826.13 -2.28 -18.01 16 13 C 0.07 1.41 9.35 127.77 1.19 2.60 16 14 C 0.15 5.12 2.48 45.02 0.11 5.23 16 15 C -0.12 -3.77 5.31 30.67 0.16 -3.60 16 16 C 0.14 5.76 6.51 86.36 0.56 6.32 16 17 N -0.61 -29.84 3.00 -699.01 -2.10 -31.93 16 18 C -0.26 -13.81 9.58 84.03 0.81 -13.01 16 19 H 0.07 3.67 7.88 -2.91 -0.02 3.65 16 20 C -0.05 -2.87 4.92 84.86 0.42 -2.45 16 21 N -0.94 -55.37 11.20 21.65 0.24 -55.13 16 22 Si 0.97 43.97 29.59 68.60 2.03 46.00 16 23 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 24 H -0.30 -13.62 7.11 99.48 0.71 -12.91 16 25 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 26 C 0.18 8.75 5.30 86.35 0.46 9.21 16 27 C -0.13 -4.65 5.34 30.67 0.16 -4.49 16 28 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.10 1.01 8.10 -2.39 -0.02 0.99 16 30 H 0.05 1.10 7.19 -2.39 -0.02 1.08 16 31 H 0.18 1.41 8.06 -2.91 -0.02 1.39 16 32 H 0.43 1.28 9.06 -74.06 -0.67 0.61 16 33 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 34 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 35 H 0.07 1.69 7.06 -2.39 -0.02 1.68 16 36 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.08 1.27 6.55 -2.39 -0.02 1.26 16 38 H 0.09 1.59 6.46 -2.39 -0.02 1.57 16 39 H 0.07 2.69 6.90 -2.39 -0.02 2.67 16 40 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 41 H 0.08 2.21 6.73 -2.38 -0.02 2.20 16 42 H 0.06 2.47 7.93 -2.39 -0.02 2.45 16 43 H 0.01 0.28 8.14 -2.39 -0.02 0.26 16 44 H 0.25 14.26 8.31 -92.71 -0.77 13.49 16 45 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 46 H 0.06 3.22 6.07 -2.39 -0.01 3.20 16 47 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 48 H 0.07 2.41 7.72 -2.39 -0.02 2.40 16 Total: -1.00 -74.34 383.46 0.51 -73.83 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: 0.31 Total: 12.43 kcal Atomic # 6 Polarization: 11.66 SS G_CDS: 6.61 Total: 18.27 kcal Atomic # 7 Polarization: -113.17 SS G_CDS: -7.18 Total: -120.34 kcal Atomic # 8 Polarization: -28.93 SS G_CDS: -1.26 Total: -30.19 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 46.00 kcal Total: -74.34 0.51 -73.83 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001006436889.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.383 kcal (2) G-P(sol) polarization free energy of solvation -74.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds