Wall clock time and date at job start Tue Mar 31 2020 17:41:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.37999 * 120.82270 * 2 1 4 4 C 1.39122 * 119.26640 * 180.02562 * 3 2 1 5 5 O 1.35503 * 119.52649 * 180.02562 * 4 3 2 6 6 N 1.32434 * 120.94669 * 0.02562 * 4 3 2 7 7 C 1.31636 * 121.80405 * 359.69960 * 6 4 3 8 8 C 1.50695 * 119.68775 * 180.31685 * 7 6 4 9 9 C 1.39557 * 120.62138 * 0.58584 * 7 6 4 10 10 C 1.47616 * 120.50052 * 179.70218 * 9 7 6 11 11 O 1.21577 * 120.00392 * 269.73074 * 10 9 7 12 12 N 1.34784 * 119.99909 * 89.71930 * 10 9 7 13 13 C 1.46503 * 119.99809 * 180.02562 * 12 10 9 14 14 C 1.52996 * 109.46896 * 180.02562 * 13 12 10 15 15 H 1.08998 * 109.52249 * 55.08725 * 14 13 12 16 16 C 1.53072 * 109.62425 * 175.10710 * 14 13 12 17 17 C 1.53042 * 109.66170 * 181.16951 * 16 14 13 18 18 C 1.53185 * 109.31328 * 298.70430 * 17 16 14 19 19 N 1.46932 * 108.77860 * 54.63608 * 18 17 16 20 20 C 1.36934 * 120.63392 * 126.41072 * 19 18 17 21 21 H 1.07997 * 119.99862 * 331.80624 * 20 19 18 22 22 C 1.38806 * 120.00015 * 151.80754 * 20 19 18 23 23 N 1.31624 * 120.00191 * 343.08772 * 22 20 19 24 24 Si 1.86800 * 120.00146 * 163.08448 * 22 20 19 25 25 H 1.48503 * 109.47142 * 60.00161 * 24 22 20 26 26 H 1.48498 * 109.47084 * 180.02562 * 24 22 20 27 27 H 1.48500 * 109.47267 * 300.00095 * 24 22 20 28 28 C 1.46928 * 118.73342 * 306.38841 * 19 18 17 29 29 H 1.08997 * 109.47489 * 269.97942 * 1 2 3 30 30 H 1.09006 * 109.47124 * 29.98267 * 1 2 3 31 31 H 1.09005 * 109.47017 * 149.97705 * 1 2 3 32 32 H 1.07995 * 120.36310 * 0.03711 * 3 2 1 33 33 H 0.96699 * 113.99659 * 90.00072 * 5 4 3 34 34 H 1.09008 * 109.46917 * 270.26363 * 8 7 6 35 35 H 1.08995 * 109.47452 * 30.26542 * 8 7 6 36 36 H 1.09000 * 109.47403 * 150.27401 * 8 7 6 37 37 H 0.97002 * 119.99886 * 0.02562 * 12 10 9 38 38 H 1.09002 * 109.46647 * 60.00574 * 13 12 10 39 39 H 1.09000 * 109.47544 * 300.00625 * 13 12 10 40 40 H 1.09003 * 109.34638 * 61.14889 * 16 14 13 41 41 H 1.09001 * 109.44540 * 301.25971 * 16 14 13 42 42 H 1.09003 * 109.49717 * 178.74555 * 17 16 14 43 43 H 1.08999 * 109.49263 * 58.65769 * 17 16 14 44 44 H 1.08996 * 109.58772 * 294.84198 * 18 17 16 45 45 H 1.09009 * 109.70268 * 174.48881 * 18 17 16 46 46 H 0.96995 * 120.00379 * 180.02562 * 23 22 20 47 47 H 1.09000 * 109.58613 * 173.39178 * 28 19 18 48 48 H 1.08995 * 109.59058 * 293.68043 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2140 1.1851 0.0000 4 6 3.6048 1.1473 -0.0005 5 8 4.3043 2.3078 0.0000 6 7 4.2547 -0.0066 -0.0016 7 6 3.6204 -1.1601 0.0038 8 6 4.4080 -2.4448 0.0095 9 6 2.2256 -1.2043 -0.0015 10 6 1.5171 -2.4994 -0.0022 11 8 1.2250 -3.0321 -1.0553 12 7 1.1941 -3.0914 1.1648 13 6 0.4915 -4.3770 1.1642 14 6 0.2467 -4.8250 2.6064 15 1 -0.2850 -4.0413 3.1461 16 6 -0.5930 -6.1048 2.6117 17 6 -0.8630 -6.5377 4.0546 18 6 0.4685 -6.8302 4.7533 19 7 1.3367 -5.6514 4.6294 20 6 1.9001 -5.0801 5.7390 21 1 1.4051 -5.1560 6.6958 22 6 3.1075 -4.4033 5.6340 23 7 3.8728 -4.5826 4.5782 24 14 3.6461 -3.2380 6.9909 25 1 3.7643 -3.9863 8.2681 26 1 4.9617 -2.6448 6.6406 27 1 2.6404 -2.1559 7.1424 28 6 1.5892 -5.0975 3.2921 29 1 -0.3634 -0.0004 1.0276 30 1 -0.3634 0.8902 -0.5136 31 1 -0.3633 -0.8898 -0.5142 32 1 1.6935 2.1313 0.0006 33 1 4.5077 2.6440 0.8835 34 1 4.6018 -2.7568 -1.0168 35 1 5.3546 -2.2885 0.5267 36 1 3.8371 -3.2187 0.5227 37 1 1.4270 -2.6663 2.0051 38 1 1.0982 -5.1223 0.6498 39 1 -0.4638 -4.2687 0.6506 40 1 -0.0510 -6.8944 2.0911 41 1 -1.5401 -5.9196 2.1048 42 1 -1.4797 -7.4365 4.0554 43 1 -1.3832 -5.7386 4.5827 44 1 0.9477 -7.6882 4.2819 45 1 0.2911 -7.0442 5.8074 46 1 4.7167 -4.1100 4.5050 47 1 2.1492 -4.1667 3.3819 48 1 2.1620 -5.8132 2.7024 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001023757567.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:41:46 Heat of formation + Delta-G solvation = -36.970108 kcal Electronic energy + Delta-G solvation = -29613.764785 eV Core-core repulsion = 25668.852480 eV Total energy + Delta-G solvation = -3944.912305 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.00851 -39.33026 -37.85837 -37.18518 -34.69755 -34.43160 -33.12677 -32.00064 -30.78095 -29.85253 -28.23971 -27.87668 -25.61993 -25.29010 -23.55101 -22.20358 -21.44599 -20.99056 -20.49756 -19.15525 -18.56658 -17.61403 -17.33165 -16.76490 -16.09178 -15.68642 -15.19444 -14.72156 -14.37174 -14.23589 -14.04038 -13.78831 -13.66006 -13.50724 -13.45331 -13.22496 -12.95237 -12.90416 -12.38243 -12.32519 -12.26290 -12.22662 -12.13287 -11.95511 -11.73739 -11.30344 -11.05893 -10.77801 -10.56060 -10.30142 -10.25027 -10.14381 -9.96135 -9.71377 -9.65883 -9.51124 -9.43840 -8.91113 -8.84790 -8.54406 -6.73108 -5.86115 -3.28647 0.65702 1.00167 2.62735 3.09293 3.31350 3.38390 3.38786 3.43793 3.54966 4.32970 4.37645 4.42307 4.72267 4.87310 5.02069 5.09530 5.19493 5.27077 5.33363 5.38626 5.45416 5.48835 5.51543 5.54374 5.67890 5.71150 5.73772 5.86616 5.92024 5.99761 6.03880 6.08692 6.22314 6.24565 6.33225 6.35219 6.44499 6.59573 6.62214 6.75844 6.79894 6.96033 7.23736 7.26120 7.53188 7.64027 7.72389 7.76039 8.28328 8.37386 9.14245 9.77205 10.34767 11.21813 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.010356 B = 0.004146 C = 0.003325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2703.036108 B = 6752.461765 C = 8418.855437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.011 3.989 3 C -0.199 4.199 4 C 0.330 3.670 5 O -0.482 6.482 6 N -0.506 5.506 7 C 0.202 3.798 8 C -0.114 4.114 9 C -0.190 4.190 10 C 0.572 3.428 11 O -0.537 6.537 12 N -0.709 5.709 13 C 0.129 3.871 14 C -0.128 4.128 15 H 0.069 0.931 16 C -0.100 4.100 17 C -0.133 4.133 18 C 0.143 3.857 19 N -0.592 5.592 20 C -0.254 4.254 21 H 0.064 0.936 22 C 0.005 3.995 23 N -0.900 5.900 24 Si 0.898 3.102 25 H -0.282 1.282 26 H -0.290 1.290 27 H -0.285 1.285 28 C 0.179 3.821 29 H 0.085 0.915 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.145 0.855 33 H 0.403 0.597 34 H 0.085 0.915 35 H 0.087 0.913 36 H 0.086 0.914 37 H 0.407 0.593 38 H 0.068 0.932 39 H 0.061 0.939 40 H 0.057 0.943 41 H 0.047 0.953 42 H 0.051 0.949 43 H 0.057 0.943 44 H 0.017 0.983 45 H 0.052 0.948 46 H 0.254 0.746 47 H 0.087 0.913 48 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.332 8.494 -7.442 12.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.003 3.997 3 C -0.220 4.220 4 C 0.151 3.849 5 O -0.290 6.290 6 N -0.226 5.226 7 C 0.063 3.937 8 C -0.171 4.171 9 C -0.195 4.195 10 C 0.356 3.644 11 O -0.415 6.415 12 N -0.360 5.360 13 C 0.006 3.994 14 C -0.149 4.149 15 H 0.088 0.912 16 C -0.138 4.138 17 C -0.172 4.172 18 C 0.017 3.983 19 N -0.314 5.314 20 C -0.383 4.383 21 H 0.082 0.918 22 C -0.194 4.194 23 N -0.544 5.544 24 Si 0.728 3.272 25 H -0.208 1.208 26 H -0.216 1.216 27 H -0.211 1.211 28 C 0.053 3.947 29 H 0.104 0.896 30 H 0.097 0.903 31 H 0.096 0.904 32 H 0.162 0.838 33 H 0.261 0.739 34 H 0.104 0.896 35 H 0.106 0.894 36 H 0.104 0.896 37 H 0.243 0.757 38 H 0.086 0.914 39 H 0.079 0.921 40 H 0.076 0.924 41 H 0.066 0.934 42 H 0.070 0.930 43 H 0.075 0.925 44 H 0.035 0.965 45 H 0.071 0.929 46 H 0.065 0.935 47 H 0.105 0.895 48 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges -5.496 8.179 -8.797 13.210 hybrid contribution -0.236 1.066 1.581 1.922 sum -5.732 9.245 -7.216 13.053 Atomic orbital electron populations 1.20941 0.89393 1.04094 1.03626 1.20178 0.96896 0.90881 0.91785 1.21823 0.93723 0.99238 1.07265 1.19248 0.87034 0.85073 0.93496 1.84707 1.76047 1.34117 1.34128 1.67005 1.41872 0.97822 1.15903 1.21112 0.89185 0.93211 0.90142 1.20901 1.00911 0.91520 1.03760 1.20728 0.94937 0.94447 1.09433 1.17818 0.78459 0.83835 0.84268 1.90796 1.54479 1.64928 1.31272 1.46125 1.58418 1.23040 1.08371 1.21457 0.96037 0.83893 0.98051 1.22152 1.01524 0.97681 0.93532 0.91237 1.21333 0.98321 0.97029 0.97110 1.21982 0.99247 0.99948 0.96007 1.20934 0.89646 0.89887 0.97874 1.44012 1.55040 1.29066 1.03291 1.19141 1.00801 1.29499 0.88898 0.91781 1.25014 0.95220 1.01594 0.97590 1.70013 1.11473 1.43229 1.29723 0.86439 0.77548 0.81326 0.81902 1.20833 1.21589 1.21114 1.20795 0.89964 0.99538 0.84432 0.89607 0.90310 0.90370 0.83755 0.73894 0.89622 0.89394 0.89574 0.75726 0.91412 0.92111 0.92442 0.93408 0.93045 0.92456 0.96487 0.92920 0.93546 0.89514 0.96268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.22 9.69 36.00 0.35 -0.87 16 2 C 0.01 0.13 5.95 -103.96 -0.62 -0.49 16 3 C -0.20 -2.26 9.72 -39.34 -0.38 -2.64 16 4 C 0.33 4.30 7.74 -16.96 -0.13 4.17 16 5 O -0.48 -5.22 13.55 -18.20 -0.25 -5.47 16 6 N -0.51 -7.71 10.28 -9.20 -0.09 -7.81 16 7 C 0.20 3.08 6.82 -82.19 -0.56 2.52 16 8 C -0.11 -1.64 9.78 36.00 0.35 -1.28 16 9 C -0.19 -2.79 5.65 -104.82 -0.59 -3.38 16 10 C 0.57 9.02 4.32 -12.43 -0.05 8.96 16 11 O -0.54 -9.97 17.11 5.30 0.09 -9.88 16 12 N -0.71 -10.70 5.32 -61.32 -0.33 -11.03 16 13 C 0.13 1.98 5.08 -4.04 -0.02 1.96 16 14 C -0.13 -2.15 2.38 -90.48 -0.22 -2.37 16 15 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 16 C -0.10 -1.54 5.17 -26.67 -0.14 -1.67 16 17 C -0.13 -2.15 6.08 -26.61 -0.16 -2.31 16 18 C 0.14 2.85 6.52 -3.71 -0.02 2.83 16 19 N -0.59 -13.93 3.00 -172.32 -0.52 -14.45 16 20 C -0.25 -6.61 9.58 -15.06 -0.14 -6.76 16 21 H 0.06 1.66 7.88 -52.49 -0.41 1.24 16 22 C 0.00 0.12 4.92 -17.43 -0.09 0.03 16 23 N -0.90 -24.46 11.20 55.49 0.62 -23.84 16 24 Si 0.90 20.72 29.59 -169.99 -5.03 15.69 16 25 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 26 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 27 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 28 C 0.18 3.84 4.38 -3.71 -0.02 3.83 16 29 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.08 0.60 8.10 -51.93 -0.42 0.18 16 31 H 0.08 0.88 7.18 -51.93 -0.37 0.51 16 32 H 0.14 1.21 8.06 -52.49 -0.42 0.79 16 33 H 0.40 2.35 9.06 45.56 0.41 2.76 16 34 H 0.09 1.14 8.14 -51.92 -0.42 0.72 16 35 H 0.09 1.22 8.14 -51.93 -0.42 0.79 16 36 H 0.09 1.32 7.06 -51.93 -0.37 0.96 16 37 H 0.41 6.16 7.68 -40.82 -0.31 5.85 16 38 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 43 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 44 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 45 H 0.05 1.04 7.93 -51.92 -0.41 0.63 16 46 H 0.25 6.77 8.31 -40.82 -0.34 6.43 16 47 H 0.09 2.04 5.26 -51.93 -0.27 1.76 16 48 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 389.38 15.07 5.87 5.87 Total: -1.00 -31.78 389.38 -8.87 -40.64 By element: Atomic # 1 Polarization: 14.52 SS G_CDS: -6.79 Total: 7.73 kcal Atomic # 6 Polarization: 4.98 SS G_CDS: -2.44 Total: 2.53 kcal Atomic # 7 Polarization: -56.81 SS G_CDS: -0.32 Total: -57.12 kcal Atomic # 8 Polarization: -15.19 SS G_CDS: -0.16 Total: -15.34 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.03 Total: 15.69 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -31.78 -8.87 -40.64 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001023757567.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.674 kcal (2) G-P(sol) polarization free energy of solvation -31.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds