Wall clock time and date at job start Tue Mar 31 2020 17:41:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.37999 * 120.82270 * 2 1 4 4 C 1.39122 * 119.26640 * 180.02562 * 3 2 1 5 5 O 1.35503 * 119.52649 * 180.02562 * 4 3 2 6 6 N 1.32434 * 120.94669 * 0.02562 * 4 3 2 7 7 C 1.31636 * 121.80405 * 359.69960 * 6 4 3 8 8 C 1.50695 * 119.68775 * 180.31685 * 7 6 4 9 9 C 1.39557 * 120.62138 * 0.58584 * 7 6 4 10 10 C 1.47616 * 120.50052 * 179.70218 * 9 7 6 11 11 O 1.21577 * 120.00392 * 269.73074 * 10 9 7 12 12 N 1.34784 * 119.99909 * 89.71930 * 10 9 7 13 13 C 1.46503 * 119.99809 * 180.02562 * 12 10 9 14 14 C 1.52996 * 109.46896 * 180.02562 * 13 12 10 15 15 H 1.08998 * 109.52249 * 55.08725 * 14 13 12 16 16 C 1.53072 * 109.62425 * 175.10710 * 14 13 12 17 17 C 1.53042 * 109.66170 * 181.16951 * 16 14 13 18 18 C 1.53185 * 109.31328 * 298.70430 * 17 16 14 19 19 N 1.46932 * 108.77860 * 54.63608 * 18 17 16 20 20 C 1.36934 * 120.63392 * 126.41072 * 19 18 17 21 21 H 1.07997 * 119.99862 * 331.80624 * 20 19 18 22 22 C 1.38806 * 120.00015 * 151.80754 * 20 19 18 23 23 N 1.31624 * 120.00191 * 343.08772 * 22 20 19 24 24 Si 1.86800 * 120.00146 * 163.08448 * 22 20 19 25 25 H 1.48503 * 109.47142 * 60.00161 * 24 22 20 26 26 H 1.48498 * 109.47084 * 180.02562 * 24 22 20 27 27 H 1.48500 * 109.47267 * 300.00095 * 24 22 20 28 28 C 1.46928 * 118.73342 * 306.38841 * 19 18 17 29 29 H 1.08997 * 109.47489 * 269.97942 * 1 2 3 30 30 H 1.09006 * 109.47124 * 29.98267 * 1 2 3 31 31 H 1.09005 * 109.47017 * 149.97705 * 1 2 3 32 32 H 1.07995 * 120.36310 * 0.03711 * 3 2 1 33 33 H 0.96699 * 113.99659 * 90.00072 * 5 4 3 34 34 H 1.09008 * 109.46917 * 270.26363 * 8 7 6 35 35 H 1.08995 * 109.47452 * 30.26542 * 8 7 6 36 36 H 1.09000 * 109.47403 * 150.27401 * 8 7 6 37 37 H 0.97002 * 119.99886 * 0.02562 * 12 10 9 38 38 H 1.09002 * 109.46647 * 60.00574 * 13 12 10 39 39 H 1.09000 * 109.47544 * 300.00625 * 13 12 10 40 40 H 1.09003 * 109.34638 * 61.14889 * 16 14 13 41 41 H 1.09001 * 109.44540 * 301.25971 * 16 14 13 42 42 H 1.09003 * 109.49717 * 178.74555 * 17 16 14 43 43 H 1.08999 * 109.49263 * 58.65769 * 17 16 14 44 44 H 1.08996 * 109.58772 * 294.84198 * 18 17 16 45 45 H 1.09009 * 109.70268 * 174.48881 * 18 17 16 46 46 H 0.96995 * 120.00379 * 180.02562 * 23 22 20 47 47 H 1.09000 * 109.58613 * 173.39178 * 28 19 18 48 48 H 1.08995 * 109.59058 * 293.68043 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2140 1.1851 0.0000 4 6 3.6048 1.1473 -0.0005 5 8 4.3043 2.3078 0.0000 6 7 4.2547 -0.0066 -0.0016 7 6 3.6204 -1.1601 0.0038 8 6 4.4080 -2.4448 0.0095 9 6 2.2256 -1.2043 -0.0015 10 6 1.5171 -2.4994 -0.0022 11 8 1.2250 -3.0321 -1.0553 12 7 1.1941 -3.0914 1.1648 13 6 0.4915 -4.3770 1.1642 14 6 0.2467 -4.8250 2.6064 15 1 -0.2850 -4.0413 3.1461 16 6 -0.5930 -6.1048 2.6117 17 6 -0.8630 -6.5377 4.0546 18 6 0.4685 -6.8302 4.7533 19 7 1.3367 -5.6514 4.6294 20 6 1.9001 -5.0801 5.7390 21 1 1.4051 -5.1560 6.6958 22 6 3.1075 -4.4033 5.6340 23 7 3.8728 -4.5826 4.5782 24 14 3.6461 -3.2380 6.9909 25 1 3.7643 -3.9863 8.2681 26 1 4.9617 -2.6448 6.6406 27 1 2.6404 -2.1559 7.1424 28 6 1.5892 -5.0975 3.2921 29 1 -0.3634 -0.0004 1.0276 30 1 -0.3634 0.8902 -0.5136 31 1 -0.3633 -0.8898 -0.5142 32 1 1.6935 2.1313 0.0006 33 1 4.5077 2.6440 0.8835 34 1 4.6018 -2.7568 -1.0168 35 1 5.3546 -2.2885 0.5267 36 1 3.8371 -3.2187 0.5227 37 1 1.4270 -2.6663 2.0051 38 1 1.0982 -5.1223 0.6498 39 1 -0.4638 -4.2687 0.6506 40 1 -0.0510 -6.8944 2.0911 41 1 -1.5401 -5.9196 2.1048 42 1 -1.4797 -7.4365 4.0554 43 1 -1.3832 -5.7386 4.5827 44 1 0.9477 -7.6882 4.2819 45 1 0.2911 -7.0442 5.8074 46 1 4.7167 -4.1100 4.5050 47 1 2.1492 -4.1667 3.3819 48 1 2.1620 -5.8132 2.7024 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001023757567.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:41:45 Heat of formation + Delta-G solvation = -60.599260 kcal Electronic energy + Delta-G solvation = -29614.789422 eV Core-core repulsion = 25668.852480 eV Total energy + Delta-G solvation = -3945.936942 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.06788 -40.53844 -39.31338 -38.16912 -36.15054 -35.39920 -34.80506 -33.17213 -32.29403 -31.47152 -29.10671 -28.99884 -27.27999 -26.80316 -24.66317 -23.82562 -22.47955 -22.38321 -21.74000 -20.64159 -19.49403 -18.86774 -18.59850 -18.30536 -17.29430 -16.90014 -16.70442 -16.11288 -15.82732 -15.45290 -15.29161 -15.18894 -14.96153 -14.77647 -14.51548 -14.32519 -14.21023 -14.02069 -13.96012 -13.75122 -13.51349 -13.40432 -13.16455 -12.98045 -12.91288 -12.86086 -12.65106 -12.51300 -12.25191 -12.00457 -11.77333 -11.53540 -11.46186 -11.12651 -11.06439 -10.65605 -10.55566 -10.51812 -10.12920 -9.93364 -8.63385 -7.84476 -5.29818 -0.35378 0.01991 1.38939 1.47118 1.48437 1.55112 2.02853 2.35973 2.51885 2.56839 3.28043 3.34340 3.43327 3.57254 3.66320 3.93876 4.01328 4.10850 4.15512 4.17699 4.26449 4.35841 4.38250 4.49850 4.52214 4.56078 4.63760 4.66216 4.78467 4.83804 4.89636 4.90966 4.93642 5.04960 5.06201 5.09427 5.17959 5.23345 5.35148 5.38380 5.41299 5.47252 5.58085 5.69165 5.81295 6.38302 6.41559 6.51459 6.76589 7.03600 7.18261 7.89398 8.41404 9.20163 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.010356 B = 0.004146 C = 0.003325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2703.036108 B = 6752.461765 C = 8418.855437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.011 3.989 3 C -0.187 4.187 4 C 0.325 3.675 5 O -0.486 6.486 6 N -0.533 5.533 7 C 0.185 3.815 8 C -0.110 4.110 9 C -0.210 4.210 10 C 0.581 3.419 11 O -0.569 6.569 12 N -0.705 5.705 13 C 0.136 3.864 14 C -0.111 4.111 15 H 0.072 0.928 16 C -0.098 4.098 17 C -0.121 4.121 18 C 0.135 3.865 19 N -0.611 5.611 20 C -0.264 4.264 21 H 0.063 0.937 22 C -0.041 4.041 23 N -0.926 5.926 24 Si 0.956 3.044 25 H -0.280 1.280 26 H -0.297 1.297 27 H -0.276 1.276 28 C 0.188 3.812 29 H 0.100 0.900 30 H 0.106 0.894 31 H 0.062 0.938 32 H 0.181 0.819 33 H 0.424 0.576 34 H 0.091 0.909 35 H 0.086 0.914 36 H 0.069 0.931 37 H 0.407 0.593 38 H 0.054 0.946 39 H 0.081 0.919 40 H 0.054 0.946 41 H 0.082 0.918 42 H 0.082 0.918 43 H 0.057 0.943 44 H 0.009 0.991 45 H 0.050 0.950 46 H 0.249 0.751 47 H 0.062 0.938 48 H -0.013 1.013 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.607 10.186 -7.346 15.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.003 3.997 3 C -0.208 4.208 4 C 0.147 3.853 5 O -0.297 6.297 6 N -0.254 5.254 7 C 0.047 3.953 8 C -0.167 4.167 9 C -0.215 4.215 10 C 0.366 3.634 11 O -0.448 6.448 12 N -0.354 5.354 13 C 0.013 3.987 14 C -0.132 4.132 15 H 0.090 0.910 16 C -0.137 4.137 17 C -0.160 4.160 18 C 0.010 3.990 19 N -0.334 5.334 20 C -0.394 4.394 21 H 0.081 0.919 22 C -0.237 4.237 23 N -0.572 5.572 24 Si 0.785 3.215 25 H -0.206 1.206 26 H -0.223 1.223 27 H -0.202 1.202 28 C 0.063 3.937 29 H 0.118 0.882 30 H 0.125 0.875 31 H 0.080 0.920 32 H 0.199 0.801 33 H 0.286 0.714 34 H 0.109 0.891 35 H 0.105 0.895 36 H 0.088 0.912 37 H 0.243 0.757 38 H 0.073 0.927 39 H 0.099 0.901 40 H 0.073 0.927 41 H 0.100 0.900 42 H 0.100 0.900 43 H 0.076 0.924 44 H 0.027 0.973 45 H 0.068 0.932 46 H 0.058 0.942 47 H 0.081 0.919 48 H 0.005 0.995 Dipole moment (debyes) X Y Z Total from point charges -7.797 9.869 -8.670 15.276 hybrid contribution 0.513 0.541 1.589 1.755 sum -7.284 10.410 -7.081 14.546 Atomic orbital electron populations 1.21010 0.87381 1.04687 1.04654 1.20540 0.98312 0.90268 0.90589 1.22136 0.92973 1.00278 1.05379 1.19550 0.88001 0.84975 0.92800 1.84665 1.75903 1.33013 1.36081 1.66965 1.42794 0.98502 1.17158 1.21100 0.89609 0.93356 0.91284 1.20822 1.00622 0.91389 1.03856 1.20710 0.94828 0.94745 1.11247 1.17931 0.77741 0.84023 0.83688 1.90768 1.55928 1.65916 1.32229 1.46108 1.58158 1.22860 1.08310 1.21380 0.96688 0.83657 0.97004 1.21907 0.98775 0.98804 0.93672 0.90994 1.21361 0.99491 0.95808 0.96993 1.21859 0.96977 1.01401 0.95761 1.21118 0.91073 0.88479 0.98356 1.44310 1.55451 1.30371 1.03262 1.19425 1.00870 1.29418 0.89733 0.91933 1.25650 0.95417 1.03083 0.99563 1.70164 1.11583 1.44084 1.31338 0.85516 0.76808 0.79640 0.79538 1.20609 1.22286 1.20178 1.20588 0.92078 0.97282 0.83784 0.88205 0.87499 0.91952 0.80125 0.71403 0.89075 0.89470 0.91242 0.75739 0.92726 0.90063 0.92730 0.89982 0.89954 0.92412 0.97320 0.93188 0.94184 0.91926 0.99450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.06 9.69 71.23 0.69 -1.37 16 2 C 0.01 0.25 5.95 -19.43 -0.12 0.13 16 3 C -0.19 -3.74 9.72 22.43 0.22 -3.52 16 4 C 0.33 7.99 7.74 84.81 0.66 8.65 16 5 O -0.49 -9.53 13.55 -88.05 -1.19 -10.72 16 6 N -0.53 -16.24 10.28 -295.90 -3.04 -19.29 16 7 C 0.18 5.76 6.82 42.90 0.29 6.05 16 8 C -0.11 -3.36 9.78 71.23 0.70 -2.66 16 9 C -0.21 -6.15 5.65 -20.00 -0.11 -6.26 16 10 C 0.58 18.50 4.32 86.72 0.38 18.87 16 11 O -0.57 -21.33 17.11 -3.96 -0.07 -21.40 16 12 N -0.70 -21.46 5.32 -466.18 -2.48 -23.94 16 13 C 0.14 4.10 5.08 86.38 0.44 4.54 16 14 C -0.11 -3.64 2.38 -10.71 -0.03 -3.66 16 15 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 16 C -0.10 -2.80 5.17 30.63 0.16 -2.64 16 17 C -0.12 -3.63 6.08 30.67 0.19 -3.44 16 18 C 0.14 5.34 6.52 86.36 0.56 5.90 16 19 N -0.61 -29.11 3.00 -699.10 -2.09 -31.20 16 20 C -0.26 -13.93 9.58 84.03 0.81 -13.12 16 21 H 0.06 3.25 7.88 -2.91 -0.02 3.22 16 22 C -0.04 -2.18 4.92 84.86 0.42 -1.77 16 23 N -0.93 -52.00 11.20 21.65 0.24 -51.75 16 24 Si 0.96 43.04 29.59 68.60 2.03 45.07 16 25 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 26 H -0.30 -13.55 7.11 99.48 0.71 -12.84 16 27 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 28 C 0.19 8.31 4.38 86.36 0.38 8.69 16 29 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 30 H 0.11 1.22 8.10 -2.38 -0.02 1.20 16 31 H 0.06 1.29 7.18 -2.38 -0.02 1.27 16 32 H 0.18 2.23 8.06 -2.91 -0.02 2.20 16 33 H 0.42 4.00 9.06 -74.06 -0.67 3.33 16 34 H 0.09 2.58 8.14 -2.38 -0.02 2.56 16 35 H 0.09 2.59 8.14 -2.39 -0.02 2.57 16 36 H 0.07 2.31 7.06 -2.39 -0.02 2.29 16 37 H 0.41 12.56 7.68 -92.71 -0.71 11.85 16 38 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 39 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 40 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 41 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 42 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 43 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 44 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 45 H 0.05 1.95 7.93 -2.38 -0.02 1.94 16 46 H 0.25 13.73 8.31 -92.71 -0.77 12.96 16 47 H 0.06 3.05 5.26 -2.39 -0.01 3.04 16 48 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 Total: -1.00 -70.26 389.38 -1.38 -71.64 By element: Atomic # 1 Polarization: 27.59 SS G_CDS: -0.40 Total: 27.19 kcal Atomic # 6 Polarization: 8.78 SS G_CDS: 5.62 Total: 14.40 kcal Atomic # 7 Polarization: -118.80 SS G_CDS: -7.38 Total: -126.18 kcal Atomic # 8 Polarization: -30.85 SS G_CDS: -1.26 Total: -32.11 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.07 kcal Total: -70.26 -1.38 -71.64 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001023757567.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.040 kcal (2) G-P(sol) polarization free energy of solvation -70.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds