Wall clock time and date at job start Tue Mar 31 2020 17:56:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35924 * 117.00219 * 2 1 4 4 C 1.38858 * 120.40312 * 359.97438 * 3 2 1 5 5 N 1.31875 * 120.99716 * 180.02562 * 4 3 2 6 6 C 1.31678 * 121.94784 * 0.02647 * 5 4 3 7 7 C 1.39534 * 120.68863 * 359.97438 * 6 5 4 8 8 C 1.47853 * 120.53290 * 180.02562 * 7 6 5 9 9 O 1.21549 * 120.00176 * 173.50358 * 8 7 6 10 10 N 1.34777 * 119.99828 * 353.50095 * 8 7 6 11 11 C 1.46503 * 119.99906 * 180.02562 * 10 8 7 12 12 C 1.52999 * 109.46988 * 180.02562 * 11 10 8 13 13 H 1.08997 * 109.70274 * 59.87732 * 12 11 10 14 14 C 1.53627 * 109.66162 * 180.47070 * 12 11 10 15 15 C 1.53045 * 109.24078 * 174.54586 * 14 12 11 16 16 C 1.53041 * 109.53931 * 298.51121 * 15 14 12 17 17 C 1.53199 * 109.31011 * 61.36560 * 16 15 14 18 18 N 1.46923 * 109.58746 * 299.52182 * 12 11 10 19 19 C 1.36943 * 120.62861 * 6.62888 * 18 12 11 20 20 H 1.07999 * 120.00098 * 322.67747 * 19 18 12 21 21 C 1.38809 * 119.99714 * 142.95219 * 19 18 12 22 22 N 1.31616 * 120.00395 * 359.19785 * 21 19 18 23 23 Si 1.86802 * 119.99955 * 179.19161 * 21 19 18 24 24 H 1.48507 * 109.46967 * 0.02562 * 23 21 19 25 25 H 1.48503 * 109.47304 * 119.99965 * 23 21 19 26 26 H 1.48506 * 109.47207 * 240.00469 * 23 21 19 27 27 C 1.38839 * 120.40652 * 180.32531 * 3 2 1 28 28 C 1.50697 * 120.88226 * 359.97438 * 27 3 2 29 29 H 1.09001 * 109.46934 * 60.00321 * 1 2 3 30 30 H 1.08997 * 109.47323 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47320 * 300.00444 * 1 2 3 32 32 H 1.07996 * 119.50135 * 0.03517 * 4 3 2 33 33 H 1.07998 * 119.66064 * 179.97438 * 6 5 4 34 34 H 0.96997 * 120.00456 * 359.97438 * 10 8 7 35 35 H 1.09000 * 109.47128 * 59.99800 * 11 10 8 36 36 H 1.08999 * 109.46359 * 299.99757 * 11 10 8 37 37 H 1.08998 * 109.63266 * 54.55887 * 14 12 11 38 38 H 1.08996 * 109.45820 * 294.42905 * 14 12 11 39 39 H 1.08992 * 109.45629 * 178.49088 * 15 14 12 40 40 H 1.09004 * 109.44638 * 58.52703 * 15 14 12 41 41 H 1.08996 * 109.49701 * 301.41730 * 16 15 14 42 42 H 1.08992 * 109.52296 * 181.32844 * 16 15 14 43 43 H 1.09000 * 109.58435 * 185.57536 * 17 16 15 44 44 H 1.08995 * 109.70289 * 65.22152 * 17 16 15 45 45 H 0.96999 * 120.00556 * 180.02562 * 22 21 19 46 46 H 1.08998 * 109.47498 * 263.45064 * 28 27 3 47 47 H 1.08996 * 109.46903 * 23.45346 * 28 27 3 48 48 H 1.09005 * 109.46985 * 143.44850 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2111 0.0000 4 6 1.2981 2.3810 -0.0005 5 7 1.8846 3.5621 -0.0010 6 6 3.1953 3.6892 -0.0016 7 6 4.0199 2.5636 -0.0011 8 6 5.4911 2.7104 -0.0012 9 8 6.1997 1.7300 0.1184 10 7 6.0466 3.9312 -0.1338 11 6 7.5044 4.0765 -0.1344 12 6 7.8696 5.5533 -0.2975 13 1 7.4476 6.1293 0.5260 14 6 9.3978 5.7095 -0.3105 15 6 9.7532 7.1677 -0.6098 16 6 9.2184 7.5517 -1.9913 17 6 7.6926 7.4144 -2.0000 18 7 7.3378 6.0543 -1.5722 19 6 6.5223 5.2705 -2.3442 20 1 6.7053 4.2086 -2.4173 21 6 5.4640 5.8418 -3.0374 22 7 5.2347 7.1341 -2.9401 23 14 4.3653 4.7763 -4.1084 24 1 4.8310 3.3674 -4.0479 25 1 2.9664 4.8563 -3.6164 26 1 4.4248 5.2579 -5.5119 27 6 3.4320 1.2935 -0.0068 28 6 4.2809 0.0484 -0.0137 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 0.2197 2.3227 -0.0004 33 1 3.6366 4.6749 -0.0024 34 1 5.4812 4.7135 -0.2296 35 1 7.9262 3.5041 -0.9605 36 1 7.9068 3.7050 0.8080 37 1 9.8252 5.0657 -1.0793 38 1 9.7997 5.4295 0.6632 39 1 10.8364 7.2881 -0.5934 40 1 9.3046 7.8129 0.1456 41 1 9.6474 6.8906 -2.7442 42 1 9.4920 8.5829 -2.2141 43 1 7.3156 7.5906 -3.0074 44 1 7.2545 8.1392 -1.3139 45 1 4.4949 7.5333 -3.4242 46 1 4.5876 -0.1880 1.0052 47 1 3.7046 -0.7819 -0.4216 48 1 5.1647 0.2146 -0.6299 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001024510693.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:56:42 Heat of formation + Delta-G solvation = -35.076723 kcal Electronic energy + Delta-G solvation = -30086.341930 eV Core-core repulsion = 26141.511729 eV Total energy + Delta-G solvation = -3944.830202 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.10491 -40.62117 -39.37774 -38.84531 -35.91166 -34.91491 -34.66724 -32.83444 -31.75505 -31.31495 -28.98425 -28.50543 -27.63620 -26.52040 -24.74030 -23.74665 -23.42149 -22.21843 -21.61408 -20.69973 -19.40817 -18.51576 -18.30149 -17.47083 -17.39151 -17.17923 -16.97509 -16.63563 -16.16207 -15.75405 -15.50442 -15.18385 -14.92877 -14.78825 -14.65862 -14.47777 -14.05193 -13.97563 -13.86235 -13.78796 -13.55322 -13.39514 -13.12018 -12.90675 -12.79952 -12.73694 -12.55483 -12.39537 -12.36698 -12.03367 -11.76686 -11.49217 -11.23003 -11.07014 -11.01642 -10.67599 -10.51210 -10.40798 -9.82501 -9.54905 -8.45627 -7.84355 -5.38242 -0.50191 0.06092 1.32915 1.41289 1.44873 1.78576 1.97555 2.40805 2.45989 2.68985 3.26536 3.31432 3.39850 3.60922 3.62403 3.69435 4.00455 4.05199 4.11681 4.26135 4.29504 4.35026 4.38327 4.47359 4.53036 4.58177 4.63839 4.69137 4.73566 4.74524 4.79130 4.91227 5.02663 5.03633 5.13995 5.17852 5.26005 5.32032 5.36171 5.43147 5.50842 5.61659 5.69147 5.75779 5.90874 6.10790 6.48853 6.61636 6.71255 7.20868 7.22841 7.88038 8.43513 9.18455 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.015157 B = 0.004050 C = 0.003505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1846.864574 B = 6912.376846 C = 7987.177008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 O -0.314 6.314 3 C 0.069 3.931 4 C 0.041 3.959 5 N -0.474 5.474 6 C 0.098 3.902 7 C -0.161 4.161 8 C 0.554 3.446 9 O -0.566 6.566 10 N -0.686 5.686 11 C 0.140 3.860 12 C 0.158 3.842 13 H 0.036 0.964 14 C -0.121 4.121 15 C -0.103 4.103 16 C -0.136 4.136 17 C 0.177 3.823 18 N -0.602 5.602 19 C -0.231 4.231 20 H 0.055 0.945 21 C -0.018 4.018 22 N -0.919 5.919 23 Si 0.921 3.079 24 H -0.283 1.283 25 H -0.290 1.290 26 H -0.293 1.293 27 C -0.034 4.034 28 C -0.099 4.099 29 H 0.066 0.934 30 H 0.128 0.872 31 H 0.073 0.927 32 H 0.196 0.804 33 H 0.159 0.841 34 H 0.410 0.590 35 H 0.049 0.951 36 H 0.080 0.920 37 H 0.053 0.947 38 H 0.082 0.918 39 H 0.073 0.927 40 H 0.057 0.943 41 H 0.044 0.956 42 H 0.062 0.938 43 H 0.053 0.947 44 H 0.001 0.999 45 H 0.249 0.751 46 H 0.082 0.918 47 H 0.079 0.921 48 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.284 -8.822 8.380 12.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 O -0.227 6.227 3 C 0.021 3.979 4 C -0.117 4.117 5 N -0.183 5.183 6 C -0.061 4.061 7 C -0.166 4.166 8 C 0.341 3.659 9 O -0.448 6.448 10 N -0.335 5.335 11 C 0.017 3.983 12 C 0.053 3.947 13 H 0.053 0.947 14 C -0.161 4.161 15 C -0.140 4.140 16 C -0.175 4.175 17 C 0.052 3.948 18 N -0.327 5.327 19 C -0.362 4.362 20 H 0.073 0.927 21 C -0.215 4.215 22 N -0.564 5.564 23 Si 0.751 3.249 24 H -0.208 1.208 25 H -0.217 1.217 26 H -0.220 1.220 27 C -0.043 4.043 28 C -0.156 4.156 29 H 0.085 0.915 30 H 0.146 0.854 31 H 0.091 0.909 32 H 0.213 0.787 33 H 0.176 0.824 34 H 0.248 0.752 35 H 0.067 0.933 36 H 0.098 0.902 37 H 0.072 0.928 38 H 0.101 0.899 39 H 0.091 0.909 40 H 0.076 0.924 41 H 0.063 0.937 42 H 0.080 0.920 43 H 0.071 0.929 44 H 0.019 0.981 45 H 0.059 0.941 46 H 0.100 0.900 47 H 0.098 0.902 48 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -4.333 -8.858 8.384 12.944 hybrid contribution -0.807 -0.319 -1.196 1.478 sum -5.140 -9.178 7.188 12.741 Atomic orbital electron populations 1.23524 0.75616 1.06455 1.02761 1.86081 1.23930 1.24353 1.88289 1.19700 0.91789 0.86948 0.99462 1.23618 1.02191 0.86303 0.99596 1.67557 1.11760 1.27249 1.11760 1.22908 0.89041 0.98388 0.95752 1.20768 0.94648 0.94363 1.06860 1.18040 0.87063 0.83583 0.77208 1.90656 1.63640 1.38034 1.52488 1.45966 1.08813 1.08440 1.70272 1.21322 0.79413 0.96794 1.00801 1.21019 0.93901 0.91458 0.88366 0.94666 1.21962 0.95070 0.97284 1.01743 1.21346 1.00384 0.95912 0.96392 1.22065 0.97836 1.00054 0.97564 1.20626 0.90694 0.84888 0.98627 1.44226 1.55974 1.13584 1.18929 1.19076 1.03768 0.91334 1.22015 0.92710 1.25533 0.98074 0.96185 1.01712 1.70026 1.30965 1.10105 1.45342 0.85907 0.80250 0.79262 0.79438 1.20789 1.21653 1.22029 1.20035 0.91981 0.95737 0.96595 1.20758 0.98647 0.92512 1.03639 0.91518 0.85389 0.90854 0.78695 0.82395 0.75229 0.93266 0.90225 0.92797 0.89905 0.90874 0.92425 0.93750 0.91955 0.92894 0.98077 0.94111 0.89963 0.90234 0.90593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.12 9.82 113.37 1.11 1.24 16 2 O -0.31 -6.98 9.56 -92.69 -0.89 -7.87 16 3 C 0.07 1.91 6.68 22.56 0.15 2.06 16 4 C 0.04 1.09 10.21 84.84 0.87 1.96 16 5 N -0.47 -15.90 10.34 -194.39 -2.01 -17.91 16 6 C 0.10 3.49 10.69 85.03 0.91 4.40 16 7 C -0.16 -5.82 5.89 -20.00 -0.12 -5.94 16 8 C 0.55 21.51 7.72 86.79 0.67 22.18 16 9 O -0.57 -23.33 13.54 -3.87 -0.05 -23.38 16 10 N -0.69 -26.27 3.92 -465.96 -1.83 -28.10 16 11 C 0.14 5.08 4.45 86.38 0.38 5.46 16 12 C 0.16 5.79 3.03 45.12 0.14 5.93 16 13 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 14 C -0.12 -3.66 5.40 30.82 0.17 -3.49 16 15 C -0.10 -3.01 5.88 30.62 0.18 -2.83 16 16 C -0.14 -4.80 6.08 30.67 0.19 -4.62 16 17 C 0.18 7.93 5.21 86.37 0.45 8.38 16 18 N -0.60 -27.06 2.96 -674.43 -2.00 -29.06 16 19 C -0.23 -11.53 6.73 84.03 0.57 -10.97 16 20 H 0.06 2.87 6.17 -2.91 -0.02 2.85 16 21 C -0.02 -0.93 5.23 84.86 0.44 -0.49 16 22 N -0.92 -50.51 10.94 21.65 0.24 -50.27 16 23 Si 0.92 44.65 29.55 68.60 2.03 46.68 16 24 H -0.28 -13.83 7.11 99.48 0.71 -13.12 16 25 H -0.29 -14.22 7.11 99.48 0.71 -13.51 16 26 H -0.29 -14.34 7.11 99.48 0.71 -13.63 16 27 C -0.03 -1.12 5.97 -19.30 -0.12 -1.24 16 28 C -0.10 -2.99 8.67 71.23 0.62 -2.37 16 29 H 0.07 0.72 7.67 -2.39 -0.02 0.70 16 30 H 0.13 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.07 0.68 7.67 -2.39 -0.02 0.67 16 32 H 0.20 3.57 6.30 -2.91 -0.02 3.55 16 33 H 0.16 5.73 6.47 -2.91 -0.02 5.71 16 34 H 0.41 16.46 5.51 -92.71 -0.51 15.95 16 35 H 0.05 1.98 7.39 -2.39 -0.02 1.96 16 36 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 37 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 38 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 39 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 40 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 41 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 42 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 43 H 0.05 2.75 6.21 -2.39 -0.01 2.74 16 44 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 45 H 0.25 13.57 8.31 -92.71 -0.77 12.80 16 46 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 47 H 0.08 2.07 7.44 -2.39 -0.02 2.06 16 48 H 0.08 2.64 6.02 -2.38 -0.01 2.62 16 Total: -1.00 -63.75 374.51 2.57 -61.18 By element: Atomic # 1 Polarization: 28.60 SS G_CDS: 0.47 Total: 29.07 kcal Atomic # 6 Polarization: 13.06 SS G_CDS: 6.61 Total: 19.67 kcal Atomic # 7 Polarization: -119.74 SS G_CDS: -5.60 Total: -125.34 kcal Atomic # 8 Polarization: -30.31 SS G_CDS: -0.94 Total: -31.25 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.68 kcal Total: -63.75 2.57 -61.18 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024510693.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.105 kcal (2) G-P(sol) polarization free energy of solvation -63.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds