Wall clock time and date at job start Tue Mar 31 2020 17:56:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35927 * 117.00093 * 2 1 4 4 C 1.38853 * 120.40281 * 0.02562 * 3 2 1 5 5 N 1.31881 * 120.99992 * 179.97438 * 4 3 2 6 6 C 1.31682 * 121.93952 * 359.69846 * 5 4 3 7 7 C 1.39524 * 120.69139 * 0.59439 * 6 5 4 8 8 C 1.47862 * 120.53173 * 179.69462 * 7 6 5 9 9 O 1.21546 * 119.99582 * 173.50747 * 8 7 6 10 10 N 1.34769 * 119.99725 * 353.51212 * 8 7 6 11 11 C 1.46503 * 119.99851 * 179.97438 * 10 8 7 12 12 C 1.52998 * 109.47190 * 179.97438 * 11 10 8 13 13 H 1.08993 * 109.70509 * 298.24459 * 12 11 10 14 14 C 1.52768 * 109.51021 * 178.12562 * 12 11 10 15 15 C 1.53042 * 109.38296 * 185.70656 * 14 12 11 16 16 C 1.53044 * 109.53613 * 61.24078 * 15 14 12 17 17 C 1.53191 * 109.31435 * 298.63339 * 16 15 14 18 18 N 1.46923 * 108.77528 * 54.63370 * 17 16 15 19 19 C 1.36945 * 120.62775 * 126.36483 * 18 17 16 20 20 H 1.07997 * 120.00018 * 211.94366 * 19 18 17 21 21 C 1.38813 * 119.99430 * 31.95008 * 19 18 17 22 22 N 1.31614 * 120.00273 * 15.60696 * 21 19 18 23 23 Si 1.86803 * 119.99440 * 195.60261 * 21 19 18 24 24 H 1.48497 * 109.46798 * 179.97438 * 23 21 19 25 25 H 1.48499 * 109.47380 * 300.00202 * 23 21 19 26 26 H 1.48504 * 109.47230 * 60.00300 * 23 21 19 27 27 C 1.38843 * 120.40977 * 179.97438 * 3 2 1 28 28 C 1.50705 * 120.87739 * 0.04342 * 27 3 2 29 29 H 1.09001 * 109.46655 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.46764 * 300.00315 * 1 2 3 31 31 H 1.08999 * 109.46821 * 60.00369 * 1 2 3 32 32 H 1.08003 * 119.49940 * 359.96390 * 4 3 2 33 33 H 1.08000 * 119.65725 * 180.31169 * 6 5 4 34 34 H 0.97003 * 120.00407 * 359.97438 * 10 8 7 35 35 H 1.08998 * 109.47200 * 59.99385 * 11 10 8 36 36 H 1.09001 * 109.46961 * 299.99697 * 11 10 8 37 37 H 1.08997 * 109.56119 * 65.66964 * 14 12 11 38 38 H 1.09000 * 109.38246 * 305.63663 * 14 12 11 39 39 H 1.09000 * 109.45939 * 301.21869 * 15 14 12 40 40 H 1.09001 * 109.44317 * 181.25263 * 15 14 12 41 41 H 1.09002 * 109.49240 * 178.67647 * 16 15 14 42 42 H 1.09002 * 109.49591 * 58.59082 * 16 15 14 43 43 H 1.08998 * 109.58278 * 294.84654 * 17 16 15 44 44 H 1.08997 * 109.70035 * 174.49584 * 17 16 15 45 45 H 0.97004 * 120.00094 * 179.97438 * 22 21 19 46 46 H 1.09001 * 109.46694 * 262.84664 * 28 27 3 47 47 H 1.09005 * 109.47111 * 22.84482 * 28 27 3 48 48 H 1.08994 * 109.47144 * 142.84567 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2111 0.0000 4 6 1.2981 2.3809 0.0005 5 7 1.8846 3.5622 0.0010 6 6 3.1952 3.6892 0.0070 7 6 4.0199 2.5637 0.0005 8 6 5.4912 2.7105 0.0004 9 8 6.1997 1.7295 0.1138 10 7 6.0464 3.9320 -0.1254 11 6 7.5042 4.0776 -0.1249 12 6 7.8693 5.5551 -0.2811 13 1 7.4954 5.9272 -1.2349 14 6 9.3880 5.7131 -0.2340 15 6 9.7445 7.2014 -0.2471 16 6 9.1478 7.8815 0.9872 17 6 7.6220 7.7495 0.9506 18 7 7.2734 6.3285 0.8169 19 6 6.4139 5.7346 1.7023 20 1 6.5334 4.6911 1.9536 21 6 5.3891 6.4740 2.2767 22 7 5.0455 7.6347 1.7600 23 14 4.4977 5.8215 3.7831 24 1 3.4541 6.7923 4.1998 25 1 3.8617 4.5199 3.4568 26 1 5.4691 5.6340 4.8906 27 6 3.4321 1.2937 0.0005 28 6 4.2811 0.0485 0.0001 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 0.2197 2.3226 0.0004 33 1 3.6366 4.6749 0.0123 34 1 5.4809 4.7149 -0.2162 35 1 7.9263 3.5097 -0.9541 36 1 7.9066 3.7009 0.8155 37 1 9.8328 5.2248 -1.1010 38 1 9.7712 5.2552 0.6779 39 1 9.3401 7.6637 -1.1476 40 1 10.8285 7.3150 -0.2360 41 1 9.4218 8.9365 0.9894 42 1 9.5329 7.4033 1.8879 43 1 7.2276 8.3042 0.0993 44 1 7.1968 8.1449 1.8731 45 1 4.3290 8.1512 2.1612 46 1 4.5911 -0.1801 1.0198 47 1 3.7034 -0.7850 -0.3995 48 1 5.1626 0.2100 -0.6201 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001024510694.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:56:45 Heat of formation + Delta-G solvation = -32.568401 kcal Electronic energy + Delta-G solvation = -30045.045214 eV Core-core repulsion = 26100.323781 eV Total energy + Delta-G solvation = -3944.721433 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.09253 -40.63596 -39.40718 -38.83798 -35.92440 -34.90437 -34.65180 -32.83462 -31.76671 -31.33187 -28.96601 -28.49019 -27.62969 -26.50582 -24.71594 -23.80661 -23.40453 -22.21282 -21.58573 -20.69485 -19.40427 -18.49428 -18.29322 -17.42945 -17.39039 -17.16926 -16.95809 -16.62057 -16.16286 -15.76739 -15.49669 -15.17429 -14.92874 -14.78853 -14.64556 -14.46401 -14.05069 -13.97839 -13.86049 -13.77843 -13.62673 -13.36560 -13.07980 -12.84667 -12.82091 -12.71995 -12.57376 -12.36805 -12.32441 -12.06971 -11.77099 -11.50907 -11.20794 -11.07393 -10.96745 -10.66636 -10.52662 -10.38179 -9.80869 -9.53037 -8.53671 -7.84042 -5.29292 -0.48497 0.07956 1.38265 1.43687 1.46138 1.81484 1.96969 2.43341 2.49203 2.69409 3.28405 3.32132 3.41561 3.60193 3.64954 3.71978 4.00036 4.06208 4.13357 4.24702 4.29798 4.36683 4.39499 4.45527 4.56045 4.57152 4.65738 4.68661 4.74305 4.75623 4.78776 4.89576 5.02365 5.04430 5.16638 5.17230 5.24866 5.30411 5.36940 5.43231 5.49089 5.61858 5.64235 5.76646 5.85294 6.12223 6.44824 6.62810 6.73952 7.19838 7.23532 7.89435 8.43362 9.20019 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.014598 B = 0.004032 C = 0.003441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1917.558044 B = 6942.655921 C = 8134.794239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 O -0.314 6.314 3 C 0.069 3.931 4 C 0.041 3.959 5 N -0.475 5.475 6 C 0.099 3.901 7 C -0.161 4.161 8 C 0.554 3.446 9 O -0.567 6.567 10 N -0.686 5.686 11 C 0.139 3.861 12 C 0.159 3.841 13 H 0.033 0.967 14 C -0.122 4.122 15 C -0.103 4.103 16 C -0.135 4.135 17 C 0.179 3.821 18 N -0.600 5.600 19 C -0.237 4.237 20 H 0.060 0.940 21 C -0.021 4.021 22 N -0.916 5.916 23 Si 0.925 3.075 24 H -0.295 1.295 25 H -0.287 1.287 26 H -0.288 1.288 27 C -0.033 4.033 28 C -0.099 4.099 29 H 0.128 0.872 30 H 0.066 0.934 31 H 0.072 0.928 32 H 0.196 0.804 33 H 0.155 0.845 34 H 0.412 0.588 35 H 0.080 0.920 36 H 0.050 0.950 37 H 0.083 0.917 38 H 0.054 0.946 39 H 0.057 0.943 40 H 0.074 0.926 41 H 0.063 0.937 42 H 0.045 0.955 43 H 0.003 0.997 44 H 0.045 0.955 45 H 0.249 0.751 46 H 0.071 0.929 47 H 0.082 0.918 48 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.569 -10.482 -6.777 12.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.226 6.226 3 C 0.021 3.979 4 C -0.117 4.117 5 N -0.184 5.184 6 C -0.059 4.059 7 C -0.166 4.166 8 C 0.341 3.659 9 O -0.449 6.449 10 N -0.336 5.336 11 C 0.015 3.985 12 C 0.053 3.947 13 H 0.051 0.949 14 C -0.161 4.161 15 C -0.140 4.140 16 C -0.174 4.174 17 C 0.053 3.947 18 N -0.325 5.325 19 C -0.368 4.368 20 H 0.078 0.922 21 C -0.218 4.218 22 N -0.561 5.561 23 Si 0.756 3.244 24 H -0.221 1.221 25 H -0.213 1.213 26 H -0.215 1.215 27 C -0.042 4.042 28 C -0.155 4.155 29 H 0.146 0.854 30 H 0.085 0.915 31 H 0.091 0.909 32 H 0.213 0.787 33 H 0.172 0.828 34 H 0.250 0.750 35 H 0.098 0.902 36 H 0.069 0.931 37 H 0.102 0.898 38 H 0.073 0.927 39 H 0.076 0.924 40 H 0.092 0.908 41 H 0.082 0.918 42 H 0.064 0.936 43 H 0.021 0.979 44 H 0.064 0.936 45 H 0.058 0.942 46 H 0.090 0.910 47 H 0.101 0.899 48 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -3.628 -10.491 -6.663 12.946 hybrid contribution -0.730 0.041 1.281 1.475 sum -4.358 -10.449 -5.382 12.536 Atomic orbital electron populations 1.23521 0.75641 1.06437 1.02743 1.86079 1.23902 1.24321 1.88319 1.19692 0.91809 0.86903 0.99529 1.23627 1.02178 0.86306 0.99545 1.67571 1.11760 1.27292 1.11819 1.22911 0.89069 0.98424 0.95538 1.20748 0.94634 0.94298 1.06961 1.18043 0.87064 0.83566 0.77225 1.90652 1.63626 1.38174 1.52478 1.46046 1.08847 1.08160 1.70526 1.21350 0.79458 0.96596 1.01083 1.20819 0.93636 0.89378 0.90856 0.94907 1.21822 0.95059 0.97230 1.02013 1.21345 1.00257 0.94972 0.97447 1.22048 0.97393 0.99755 0.98250 1.20555 0.91204 0.84360 0.98567 1.44227 1.51415 1.07037 1.29845 1.19115 1.04706 0.95535 1.17437 0.92202 1.25339 0.97614 0.97938 1.00930 1.70078 1.30730 1.14890 1.40445 0.86013 0.78436 0.77397 0.82601 1.22081 1.21327 1.21514 1.20025 0.91946 0.95652 0.96571 1.20761 0.98913 0.92514 1.03302 0.85377 0.91494 0.90939 0.78717 0.82765 0.74994 0.90228 0.93125 0.89810 0.92720 0.92412 0.90756 0.91799 0.93596 0.97919 0.93602 0.94161 0.91042 0.89886 0.89783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.12 9.82 113.37 1.11 1.24 16 2 O -0.31 -6.89 9.56 -92.72 -0.89 -7.78 16 3 C 0.07 1.89 6.68 22.56 0.15 2.05 16 4 C 0.04 1.12 10.21 84.83 0.87 1.98 16 5 N -0.47 -16.37 10.34 -194.39 -2.01 -18.38 16 6 C 0.10 3.68 10.69 85.03 0.91 4.59 16 7 C -0.16 -5.89 5.89 -20.01 -0.12 -6.01 16 8 C 0.55 21.64 7.72 86.79 0.67 22.31 16 9 O -0.57 -23.36 13.52 -3.86 -0.05 -23.41 16 10 N -0.69 -26.51 3.73 -465.97 -1.74 -28.25 16 11 C 0.14 5.02 4.43 86.38 0.38 5.40 16 12 C 0.16 5.80 3.02 44.83 0.14 5.94 16 13 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 14 C -0.12 -3.65 5.35 30.53 0.16 -3.48 16 15 C -0.10 -2.97 5.89 30.62 0.18 -2.79 16 16 C -0.14 -4.71 6.08 30.67 0.19 -4.53 16 17 C 0.18 7.93 5.28 86.36 0.46 8.39 16 18 N -0.60 -26.84 2.96 -676.03 -2.00 -28.85 16 19 C -0.24 -11.76 6.82 84.03 0.57 -11.19 16 20 H 0.06 3.08 5.89 -2.91 -0.02 3.06 16 21 C -0.02 -1.08 4.92 84.86 0.42 -0.66 16 22 N -0.92 -50.18 11.40 21.65 0.25 -49.94 16 23 Si 0.92 44.67 29.58 68.60 2.03 46.70 16 24 H -0.29 -14.39 7.11 99.48 0.71 -13.68 16 25 H -0.29 -14.00 7.11 99.48 0.71 -13.30 16 26 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 27 C -0.03 -1.06 5.97 -19.30 -0.12 -1.18 16 28 C -0.10 -2.91 8.67 71.24 0.62 -2.30 16 29 H 0.13 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.07 0.70 7.67 -2.39 -0.02 0.68 16 31 H 0.07 0.68 7.67 -2.39 -0.02 0.66 16 32 H 0.20 3.61 6.30 -2.91 -0.02 3.59 16 33 H 0.16 6.14 6.47 -2.91 -0.02 6.12 16 34 H 0.41 16.86 5.35 -92.71 -0.50 16.37 16 35 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 36 H 0.05 2.01 7.51 -2.39 -0.02 1.99 16 37 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 38 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 39 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 40 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 41 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 42 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 43 H 0.00 0.13 8.14 -2.39 -0.02 0.11 16 44 H 0.05 2.34 6.31 -2.39 -0.02 2.33 16 45 H 0.25 13.61 8.31 -92.71 -0.77 12.84 16 46 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 47 H 0.08 2.05 7.42 -2.38 -0.02 2.03 16 48 H 0.08 2.71 6.02 -2.39 -0.01 2.69 16 Total: -1.00 -63.12 374.34 2.66 -60.47 By element: Atomic # 1 Polarization: 29.20 SS G_CDS: 0.48 Total: 29.68 kcal Atomic # 6 Polarization: 13.16 SS G_CDS: 6.59 Total: 19.75 kcal Atomic # 7 Polarization: -119.91 SS G_CDS: -5.51 Total: -125.42 kcal Atomic # 8 Polarization: -30.25 SS G_CDS: -0.94 Total: -31.19 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.70 kcal Total: -63.12 2.66 -60.47 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024510694.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.898 kcal (2) G-P(sol) polarization free energy of solvation -63.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds