Wall clock time and date at job start Tue Mar 31 2020 17:41:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38361 * 119.40799 * 2 1 4 4 C 1.38335 * 119.45922 * 180.02562 * 3 2 1 5 5 C 1.50701 * 120.82554 * 179.97438 * 4 3 2 6 6 C 1.39990 * 118.34999 * 359.97438 * 4 3 2 7 7 C 1.47518 * 120.59589 * 180.02562 * 6 4 3 8 8 O 1.21592 * 119.99765 * 94.88513 * 7 6 4 9 9 N 1.34780 * 120.00476 * 274.88590 * 7 6 4 10 10 C 1.46493 * 120.00147 * 184.55491 * 9 7 6 11 11 C 1.53000 * 109.47152 * 175.12299 * 10 9 7 12 12 H 1.08997 * 109.58481 * 55.00367 * 11 10 9 13 13 C 1.53195 * 109.58434 * 294.57843 * 11 10 9 14 14 C 1.53042 * 109.30806 * 185.57540 * 13 11 10 15 15 C 1.53036 * 109.53723 * 61.37015 * 14 13 11 16 16 C 1.53186 * 109.31507 * 298.63073 * 15 14 13 17 17 N 1.46923 * 108.77574 * 54.63263 * 16 15 14 18 18 C 1.36938 * 120.63165 * 126.37088 * 17 16 15 19 19 H 1.07999 * 120.00068 * 212.19122 * 18 17 16 20 20 C 1.38813 * 119.99804 * 32.18894 * 18 17 16 21 21 N 1.31619 * 119.99947 * 10.56036 * 20 18 17 22 22 Si 1.86803 * 119.99915 * 190.55385 * 20 18 17 23 23 H 1.48499 * 109.47428 * 5.00896 * 22 20 18 24 24 H 1.48503 * 109.46622 * 125.00809 * 22 20 18 25 25 H 1.48497 * 109.47113 * 245.00078 * 22 20 18 26 26 C 1.40283 * 118.80212 * 0.28229 * 6 4 3 27 27 O 1.35431 * 119.79352 * 179.69741 * 26 6 4 28 28 N 1.31882 * 119.40644 * 179.97438 * 2 1 3 29 29 H 1.09001 * 109.47136 * 89.99861 * 1 2 3 30 30 H 1.09001 * 109.47173 * 209.99754 * 1 2 3 31 31 H 1.08996 * 109.47082 * 329.99306 * 1 2 3 32 32 H 1.07999 * 120.26451 * 359.97438 * 3 2 1 33 33 H 1.08995 * 109.46743 * 274.68773 * 5 4 3 34 34 H 1.09006 * 109.46998 * 34.68028 * 5 4 3 35 35 H 1.08996 * 109.47294 * 154.67981 * 5 4 3 36 36 H 0.96996 * 119.99467 * 4.82981 * 9 7 6 37 37 H 1.08995 * 109.47046 * 295.12483 * 10 9 7 38 38 H 1.09011 * 109.47235 * 55.12014 * 10 9 7 39 39 H 1.09003 * 109.49947 * 305.52739 * 13 11 10 40 40 H 1.09002 * 109.49921 * 65.62891 * 13 11 10 41 41 H 1.08998 * 109.46484 * 301.34275 * 14 13 11 42 42 H 1.09001 * 109.44633 * 181.37944 * 14 13 11 43 43 H 1.09006 * 109.50150 * 178.68003 * 15 14 13 44 44 H 1.08998 * 109.50121 * 58.58068 * 15 14 13 45 45 H 1.09005 * 109.58495 * 294.85322 * 16 15 14 46 46 H 1.08995 * 109.70888 * 174.49409 * 16 15 14 47 47 H 0.97007 * 119.99962 * 179.97438 * 21 20 18 48 48 H 0.96706 * 113.99469 * 90.00536 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1864 1.2053 0.0000 4 6 3.5697 1.2066 -0.0005 5 6 4.3408 2.5014 -0.0011 6 6 4.2356 -0.0248 -0.0005 7 6 5.7097 -0.0813 -0.0005 8 8 6.3137 -0.1942 1.0487 9 7 6.3870 -0.0078 -1.1634 10 6 7.8435 -0.1639 -1.1739 11 6 8.3465 -0.1603 -2.6189 12 1 8.0037 0.7434 -3.1228 13 6 7.8118 -1.3947 -3.3518 14 6 8.4287 -1.4593 -4.7509 15 6 9.9492 -1.5877 -4.6343 16 6 10.5082 -0.3556 -3.9159 17 7 9.8151 -0.2033 -2.6294 18 6 10.5243 -0.1039 -1.4623 19 1 10.1129 -0.4988 -0.5451 20 6 11.7720 0.5045 -1.4580 21 7 12.1848 1.1669 -2.5178 22 14 12.8651 0.3832 0.0520 23 1 12.2285 -0.5094 1.0536 24 1 14.1864 -0.1721 -0.3369 25 1 13.0496 1.7345 0.6393 26 6 3.4757 -1.2041 -0.0060 27 8 4.0992 -2.4063 -0.0123 28 7 2.1545 -1.1489 0.0005 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8899 0.5139 32 1 1.6410 2.1375 -0.0004 33 1 4.4541 2.8562 -1.0255 34 1 3.8008 3.2461 0.5837 35 1 5.3250 2.3384 0.4380 36 1 5.9104 0.1524 -1.9929 37 1 8.3013 0.6608 -0.6278 38 1 8.1113 -1.1076 -0.6983 39 1 8.0788 -2.2928 -2.7946 40 1 6.7271 -1.3269 -3.4353 41 1 8.1820 -0.5500 -5.2989 42 1 8.0311 -2.3233 -5.2833 43 1 10.3860 -1.6572 -5.6306 44 1 10.1961 -2.4839 -4.0650 45 1 10.3416 0.5310 -4.5278 46 1 11.5765 -0.4845 -3.7424 47 1 13.0566 1.5923 -2.5147 48 1 4.2806 -2.7598 0.8694 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001024583608.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:41:36 Heat of formation + Delta-G solvation = -33.021047 kcal Electronic energy + Delta-G solvation = -29347.542393 eV Core-core repulsion = 25402.801332 eV Total energy + Delta-G solvation = -3944.741061 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.08765 -39.13922 -37.72130 -37.50448 -34.47831 -34.37187 -33.09960 -32.04499 -30.93436 -29.80768 -28.63595 -27.81176 -25.82374 -24.93505 -23.48829 -22.17815 -21.89832 -20.72464 -20.38657 -19.11720 -18.60322 -17.85429 -17.37552 -16.42171 -15.96847 -15.68343 -14.93085 -14.70900 -14.63462 -14.41456 -14.01751 -13.77772 -13.61806 -13.53108 -13.32165 -13.24768 -13.13856 -12.85378 -12.67746 -12.52029 -12.30811 -12.21446 -12.08998 -11.82401 -11.67102 -11.15188 -10.91665 -10.71190 -10.55593 -10.27768 -10.21968 -10.11703 -9.96666 -9.79802 -9.55817 -9.44180 -9.33259 -9.02820 -8.70531 -8.47961 -6.62830 -5.80211 -3.29524 0.55997 0.85414 2.65671 3.08612 3.26667 3.37585 3.45784 3.49310 3.55409 4.21953 4.27529 4.47953 4.68058 4.74113 4.95803 5.04668 5.13349 5.23277 5.29230 5.32233 5.34353 5.36000 5.52955 5.55672 5.62778 5.67711 5.71287 5.79491 5.90354 5.93763 5.99576 6.16549 6.20660 6.36705 6.37278 6.56225 6.59801 6.70455 6.76303 6.78933 6.92225 7.01933 7.24950 7.40673 7.61600 7.68752 7.69517 7.80427 8.34073 8.45502 9.19769 9.80609 10.38361 11.27368 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.015210 B = 0.003137 C = 0.002872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1840.400354 B = 8923.447382 C = 9746.345558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.164 3.836 3 C -0.188 4.188 4 C 0.010 3.990 5 C -0.127 4.127 6 C -0.198 4.198 7 C 0.572 3.428 8 O -0.533 6.533 9 N -0.710 5.710 10 C 0.127 3.873 11 C 0.167 3.833 12 H 0.029 0.971 13 C -0.130 4.130 14 C -0.109 4.109 15 C -0.144 4.144 16 C 0.175 3.825 17 N -0.584 5.584 18 C -0.257 4.257 19 H 0.069 0.931 20 C 0.009 3.991 21 N -0.902 5.902 22 Si 0.901 3.099 23 H -0.275 1.275 24 H -0.289 1.289 25 H -0.289 1.289 26 C 0.356 3.644 27 O -0.474 6.474 28 N -0.507 5.507 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.144 0.856 33 H 0.087 0.913 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.396 0.604 37 H 0.081 0.919 38 H 0.071 0.929 39 H 0.060 0.940 40 H 0.046 0.954 41 H 0.052 0.948 42 H 0.043 0.957 43 H 0.046 0.954 44 H 0.053 0.947 45 H 0.017 0.983 46 H 0.088 0.912 47 H 0.253 0.747 48 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.222 0.057 1.220 21.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.027 3.973 3 C -0.208 4.208 4 C 0.002 3.998 5 C -0.183 4.183 6 C -0.204 4.204 7 C 0.355 3.645 8 O -0.410 6.410 9 N -0.360 5.360 10 C 0.005 3.995 11 C 0.060 3.940 12 H 0.046 0.954 13 C -0.169 4.169 14 C -0.146 4.146 15 C -0.184 4.184 16 C 0.049 3.951 17 N -0.308 5.308 18 C -0.387 4.387 19 H 0.087 0.913 20 C -0.191 4.191 21 N -0.546 5.546 22 Si 0.730 3.270 23 H -0.200 1.200 24 H -0.216 1.216 25 H -0.216 1.216 26 C 0.177 3.823 27 O -0.282 6.282 28 N -0.228 5.228 29 H 0.101 0.899 30 H 0.098 0.902 31 H 0.097 0.903 32 H 0.161 0.839 33 H 0.105 0.895 34 H 0.099 0.901 35 H 0.097 0.903 36 H 0.230 0.770 37 H 0.100 0.900 38 H 0.090 0.910 39 H 0.079 0.921 40 H 0.065 0.935 41 H 0.070 0.930 42 H 0.062 0.938 43 H 0.065 0.935 44 H 0.072 0.928 45 H 0.035 0.965 46 H 0.106 0.894 47 H 0.063 0.937 48 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges -20.999 -0.710 1.368 21.055 hybrid contribution 0.947 0.610 0.707 1.330 sum -20.052 -0.100 2.075 20.159 Atomic orbital electron populations 1.20787 0.88217 1.03810 1.03500 1.21159 0.96927 0.87111 0.92147 1.21765 0.93656 0.99573 1.05789 1.20320 0.93666 0.94313 0.91465 1.20973 1.00605 0.93003 1.03740 1.21011 0.95389 0.94030 1.09998 1.17679 0.85631 0.76803 0.84383 1.90835 1.69405 1.49528 1.31226 1.46089 1.09461 1.71701 1.08725 1.21664 0.76178 1.03029 0.98657 1.20535 0.87170 0.94584 0.91752 0.95362 1.22070 0.97837 1.00212 0.96800 1.21379 0.96843 1.00016 0.96382 1.22203 0.94914 1.01783 0.99466 1.20783 0.98064 0.91517 0.84690 1.43933 0.97916 1.84959 1.03975 1.19203 1.00017 1.31410 0.88062 0.91325 1.25170 0.99795 0.96879 0.97214 1.69995 1.20003 1.35769 1.28808 0.86241 0.80441 0.77579 0.82691 1.20029 1.21577 1.21568 1.18997 0.86256 0.84548 0.92537 1.84699 1.76617 1.32528 1.34387 1.67053 1.09162 1.30414 1.16148 0.89921 0.90177 0.90260 0.83869 0.89477 0.90085 0.90291 0.76995 0.90048 0.91047 0.92142 0.93537 0.92963 0.93816 0.93485 0.92796 0.96453 0.89403 0.93650 0.73374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.66 10.16 36.00 0.37 -0.29 16 2 C 0.16 1.63 6.78 -82.53 -0.56 1.07 16 3 C -0.19 -1.69 9.43 -39.50 -0.37 -2.06 16 4 C 0.01 0.11 5.95 -103.93 -0.62 -0.50 16 5 C -0.13 -1.21 9.76 36.01 0.35 -0.86 16 6 C -0.20 -2.69 5.66 -104.69 -0.59 -3.28 16 7 C 0.57 9.31 5.34 -12.48 -0.07 9.24 16 8 O -0.53 -10.66 17.11 5.28 0.09 -10.57 16 9 N -0.71 -11.16 5.27 -61.36 -0.32 -11.48 16 10 C 0.13 2.45 3.85 -4.05 -0.02 2.44 16 11 C 0.17 3.32 2.98 -67.60 -0.20 3.12 16 12 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 13 C -0.13 -2.25 5.18 -26.61 -0.14 -2.39 16 14 C -0.11 -1.84 5.88 -26.69 -0.16 -1.99 16 15 C -0.14 -2.76 6.08 -26.62 -0.16 -2.92 16 16 C 0.17 4.10 5.25 -3.72 -0.02 4.08 16 17 N -0.58 -14.09 2.98 -164.78 -0.49 -14.58 16 18 C -0.26 -6.84 8.44 -15.06 -0.13 -6.97 16 19 H 0.07 1.83 6.37 -52.49 -0.33 1.49 16 20 C 0.01 0.23 5.04 -17.43 -0.09 0.15 16 21 N -0.90 -25.65 11.10 55.49 0.62 -25.04 16 22 Si 0.90 21.75 29.57 -169.99 -5.03 16.72 16 23 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 24 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 25 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 26 C 0.36 4.83 7.77 -16.61 -0.13 4.70 16 27 O -0.47 -6.26 13.01 -17.99 -0.23 -6.49 16 28 N -0.51 -6.43 10.28 -9.21 -0.09 -6.52 16 29 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.08 0.32 8.07 -51.93 -0.42 -0.10 16 32 H 0.14 0.83 8.06 -52.49 -0.42 0.40 16 33 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.08 0.59 8.13 -51.93 -0.42 0.17 16 35 H 0.08 0.95 7.02 -51.93 -0.36 0.58 16 36 H 0.40 5.35 7.89 -40.82 -0.32 5.03 16 37 H 0.08 1.78 7.37 -51.93 -0.38 1.40 16 38 H 0.07 1.50 7.70 -51.92 -0.40 1.10 16 39 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 40 H 0.05 0.70 7.49 -51.93 -0.39 0.31 16 41 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 43 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 44 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 45 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 46 H 0.09 2.31 6.16 -51.93 -0.32 1.99 16 47 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 48 H 0.41 3.79 9.06 45.56 0.41 4.21 16 LS Contribution 387.25 15.07 5.84 5.84 Total: -1.00 -32.94 387.25 -8.88 -41.82 By element: Atomic # 1 Polarization: 13.51 SS G_CDS: -6.73 Total: 6.79 kcal Atomic # 6 Polarization: 6.04 SS G_CDS: -2.53 Total: 3.51 kcal Atomic # 7 Polarization: -57.33 SS G_CDS: -0.29 Total: -57.62 kcal Atomic # 8 Polarization: -16.92 SS G_CDS: -0.14 Total: -17.06 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.03 Total: 16.72 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -32.94 -8.88 -41.82 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024583608.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.803 kcal (2) G-P(sol) polarization free energy of solvation -32.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds