Wall clock time and date at job start Tue Mar 31 2020 17:41:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38361 * 119.40799 * 2 1 4 4 C 1.38335 * 119.45922 * 180.02562 * 3 2 1 5 5 C 1.50701 * 120.82554 * 179.97438 * 4 3 2 6 6 C 1.39990 * 118.34999 * 359.97438 * 4 3 2 7 7 C 1.47518 * 120.59589 * 180.02562 * 6 4 3 8 8 O 1.21592 * 119.99765 * 94.88513 * 7 6 4 9 9 N 1.34780 * 120.00476 * 274.88590 * 7 6 4 10 10 C 1.46493 * 120.00147 * 184.55491 * 9 7 6 11 11 C 1.53000 * 109.47152 * 175.12299 * 10 9 7 12 12 H 1.08997 * 109.58481 * 55.00367 * 11 10 9 13 13 C 1.53195 * 109.58434 * 294.57843 * 11 10 9 14 14 C 1.53042 * 109.30806 * 185.57540 * 13 11 10 15 15 C 1.53036 * 109.53723 * 61.37015 * 14 13 11 16 16 C 1.53186 * 109.31507 * 298.63073 * 15 14 13 17 17 N 1.46923 * 108.77574 * 54.63263 * 16 15 14 18 18 C 1.36938 * 120.63165 * 126.37088 * 17 16 15 19 19 H 1.07999 * 120.00068 * 212.19122 * 18 17 16 20 20 C 1.38813 * 119.99804 * 32.18894 * 18 17 16 21 21 N 1.31619 * 119.99947 * 10.56036 * 20 18 17 22 22 Si 1.86803 * 119.99915 * 190.55385 * 20 18 17 23 23 H 1.48499 * 109.47428 * 5.00896 * 22 20 18 24 24 H 1.48503 * 109.46622 * 125.00809 * 22 20 18 25 25 H 1.48497 * 109.47113 * 245.00078 * 22 20 18 26 26 C 1.40283 * 118.80212 * 0.28229 * 6 4 3 27 27 O 1.35431 * 119.79352 * 179.69741 * 26 6 4 28 28 N 1.31882 * 119.40644 * 179.97438 * 2 1 3 29 29 H 1.09001 * 109.47136 * 89.99861 * 1 2 3 30 30 H 1.09001 * 109.47173 * 209.99754 * 1 2 3 31 31 H 1.08996 * 109.47082 * 329.99306 * 1 2 3 32 32 H 1.07999 * 120.26451 * 359.97438 * 3 2 1 33 33 H 1.08995 * 109.46743 * 274.68773 * 5 4 3 34 34 H 1.09006 * 109.46998 * 34.68028 * 5 4 3 35 35 H 1.08996 * 109.47294 * 154.67981 * 5 4 3 36 36 H 0.96996 * 119.99467 * 4.82981 * 9 7 6 37 37 H 1.08995 * 109.47046 * 295.12483 * 10 9 7 38 38 H 1.09011 * 109.47235 * 55.12014 * 10 9 7 39 39 H 1.09003 * 109.49947 * 305.52739 * 13 11 10 40 40 H 1.09002 * 109.49921 * 65.62891 * 13 11 10 41 41 H 1.08998 * 109.46484 * 301.34275 * 14 13 11 42 42 H 1.09001 * 109.44633 * 181.37944 * 14 13 11 43 43 H 1.09006 * 109.50150 * 178.68003 * 15 14 13 44 44 H 1.08998 * 109.50121 * 58.58068 * 15 14 13 45 45 H 1.09005 * 109.58495 * 294.85322 * 16 15 14 46 46 H 1.08995 * 109.70888 * 174.49409 * 16 15 14 47 47 H 0.97007 * 119.99962 * 179.97438 * 21 20 18 48 48 H 0.96706 * 113.99469 * 90.00536 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1864 1.2053 0.0000 4 6 3.5697 1.2066 -0.0005 5 6 4.3408 2.5014 -0.0011 6 6 4.2356 -0.0248 -0.0005 7 6 5.7097 -0.0813 -0.0005 8 8 6.3137 -0.1942 1.0487 9 7 6.3870 -0.0078 -1.1634 10 6 7.8435 -0.1639 -1.1739 11 6 8.3465 -0.1603 -2.6189 12 1 8.0037 0.7434 -3.1228 13 6 7.8118 -1.3947 -3.3518 14 6 8.4287 -1.4593 -4.7509 15 6 9.9492 -1.5877 -4.6343 16 6 10.5082 -0.3556 -3.9159 17 7 9.8151 -0.2033 -2.6294 18 6 10.5243 -0.1039 -1.4623 19 1 10.1129 -0.4988 -0.5451 20 6 11.7720 0.5045 -1.4580 21 7 12.1848 1.1669 -2.5178 22 14 12.8651 0.3832 0.0520 23 1 12.2285 -0.5094 1.0536 24 1 14.1864 -0.1721 -0.3369 25 1 13.0496 1.7345 0.6393 26 6 3.4757 -1.2041 -0.0060 27 8 4.0992 -2.4063 -0.0123 28 7 2.1545 -1.1489 0.0005 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8899 0.5139 32 1 1.6410 2.1375 -0.0004 33 1 4.4541 2.8562 -1.0255 34 1 3.8008 3.2461 0.5837 35 1 5.3250 2.3384 0.4380 36 1 5.9104 0.1524 -1.9929 37 1 8.3013 0.6608 -0.6278 38 1 8.1113 -1.1076 -0.6983 39 1 8.0788 -2.2928 -2.7946 40 1 6.7271 -1.3269 -3.4353 41 1 8.1820 -0.5500 -5.2989 42 1 8.0311 -2.3233 -5.2833 43 1 10.3860 -1.6572 -5.6306 44 1 10.1961 -2.4839 -4.0650 45 1 10.3416 0.5310 -4.5278 46 1 11.5765 -0.4845 -3.7424 47 1 13.0566 1.5923 -2.5147 48 1 4.2806 -2.7598 0.8694 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001024583608.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:41:34 Heat of formation + Delta-G solvation = -58.408648 kcal Electronic energy + Delta-G solvation = -29348.643282 eV Core-core repulsion = 25402.801332 eV Total energy + Delta-G solvation = -3945.841950 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.05471 -40.46183 -39.32589 -38.43068 -35.97142 -35.27600 -34.94980 -32.91866 -32.50470 -31.56749 -29.58831 -28.53884 -27.44922 -26.67010 -24.46685 -23.84874 -22.92632 -22.25910 -21.59218 -20.77599 -19.52120 -19.18649 -18.28454 -18.18642 -17.41081 -16.82775 -16.55840 -16.10877 -15.88018 -15.70169 -15.21974 -15.15230 -14.91146 -14.82957 -14.53477 -14.25539 -14.21825 -14.07764 -13.96351 -13.90970 -13.39189 -13.24593 -12.96234 -12.92524 -12.84112 -12.80593 -12.63226 -12.51944 -12.41237 -12.01114 -11.84618 -11.58988 -11.46654 -11.17575 -11.04578 -10.64277 -10.56056 -10.50528 -10.18354 -9.86993 -8.61575 -7.88000 -5.38864 -0.30956 0.02258 1.36830 1.41942 1.44882 1.54716 2.00765 2.28288 2.48791 2.63396 3.27463 3.37825 3.54026 3.58022 3.70295 3.92530 3.97277 4.10285 4.17330 4.18732 4.28300 4.34679 4.45790 4.51470 4.57264 4.57751 4.64653 4.75798 4.83640 4.89461 4.96074 5.00526 5.02702 5.06814 5.12687 5.14808 5.19301 5.25045 5.28123 5.37826 5.43300 5.51990 5.59979 5.68284 5.80825 6.37231 6.39395 6.41780 6.79070 7.04857 7.15462 7.83473 8.35552 9.17127 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.015210 B = 0.003137 C = 0.002872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1840.400354 B = 8923.447382 C = 9746.345558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.161 3.839 3 C -0.174 4.174 4 C 0.008 3.992 5 C -0.125 4.125 6 C -0.220 4.220 7 C 0.579 3.421 8 O -0.578 6.578 9 N -0.698 5.698 10 C 0.147 3.853 11 C 0.167 3.833 12 H 0.032 0.968 13 C -0.121 4.121 14 C -0.104 4.104 15 C -0.135 4.135 16 C 0.179 3.821 17 N -0.602 5.602 18 C -0.257 4.257 19 H 0.062 0.938 20 C -0.042 4.042 21 N -0.930 5.930 22 Si 0.956 3.044 23 H -0.273 1.273 24 H -0.288 1.288 25 H -0.290 1.290 26 C 0.344 3.656 27 O -0.490 6.490 28 N -0.528 5.528 29 H 0.097 0.903 30 H 0.075 0.925 31 H 0.108 0.892 32 H 0.186 0.814 33 H 0.101 0.899 34 H 0.109 0.891 35 H 0.046 0.954 36 H 0.410 0.590 37 H 0.048 0.952 38 H 0.050 0.950 39 H 0.047 0.953 40 H 0.077 0.923 41 H 0.060 0.940 42 H 0.075 0.925 43 H 0.068 0.932 44 H 0.045 0.955 45 H 0.000 1.000 46 H 0.052 0.948 47 H 0.250 0.750 48 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.650 0.468 0.473 24.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.024 3.976 3 C -0.193 4.193 4 C 0.000 4.000 5 C -0.181 4.181 6 C -0.227 4.227 7 C 0.364 3.636 8 O -0.457 6.457 9 N -0.348 5.348 10 C 0.023 3.977 11 C 0.060 3.940 12 H 0.050 0.950 13 C -0.160 4.160 14 C -0.141 4.141 15 C -0.174 4.174 16 C 0.054 3.946 17 N -0.326 5.326 18 C -0.387 4.387 19 H 0.079 0.921 20 C -0.238 4.238 21 N -0.575 5.575 22 Si 0.785 3.215 23 H -0.198 1.198 24 H -0.214 1.214 25 H -0.217 1.217 26 C 0.165 3.835 27 O -0.300 6.300 28 N -0.249 5.249 29 H 0.115 0.885 30 H 0.094 0.906 31 H 0.127 0.873 32 H 0.203 0.797 33 H 0.120 0.880 34 H 0.128 0.872 35 H 0.065 0.935 36 H 0.247 0.753 37 H 0.066 0.934 38 H 0.068 0.932 39 H 0.066 0.934 40 H 0.095 0.905 41 H 0.079 0.921 42 H 0.093 0.907 43 H 0.087 0.913 44 H 0.064 0.936 45 H 0.018 0.982 46 H 0.071 0.929 47 H 0.059 0.941 48 H 0.279 0.721 Dipole moment (debyes) X Y Z Total from point charges -24.472 -0.313 0.600 24.481 hybrid contribution 1.874 0.514 0.953 2.164 sum -22.598 0.201 1.552 22.652 Atomic orbital electron populations 1.20934 0.85345 1.05098 1.04722 1.21928 0.98756 0.86700 0.90208 1.22165 0.92592 1.00971 1.03573 1.20577 0.94827 0.93660 0.90937 1.21017 0.99103 0.93134 1.04883 1.20792 0.93123 0.95537 1.13231 1.18104 0.86930 0.75097 0.83446 1.90800 1.70775 1.51403 1.32767 1.45862 1.07864 1.71524 1.09576 1.21162 0.78222 1.00461 0.97836 1.20668 0.84846 0.96169 0.92275 0.95026 1.21964 0.99570 0.97797 0.96649 1.21369 0.94730 1.01845 0.96184 1.22056 0.96868 0.98773 0.99721 1.20613 0.96457 0.92909 0.84652 1.44158 0.99757 1.85218 1.03481 1.19360 1.00278 1.30298 0.88794 0.92057 1.25789 1.01115 0.97337 0.99525 1.70126 1.20124 1.37025 1.30272 0.85371 0.78844 0.77250 0.80019 1.19821 1.21404 1.21686 1.19086 0.86800 0.84364 0.93279 1.84643 1.76874 1.32859 1.35645 1.67145 1.08514 1.32022 1.17171 0.88510 0.90597 0.87318 0.79718 0.88023 0.87221 0.93510 0.75331 0.93353 0.93193 0.93378 0.90492 0.92128 0.90682 0.91339 0.93609 0.98173 0.92935 0.94080 0.72115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.88 10.16 71.24 0.72 -0.16 16 2 C 0.16 2.70 6.78 42.58 0.29 2.99 16 3 C -0.17 -2.46 9.43 22.32 0.21 -2.25 16 4 C 0.01 0.16 5.95 -19.42 -0.12 0.04 16 5 C -0.13 -2.15 9.76 71.24 0.70 -1.46 16 6 C -0.22 -5.88 5.66 -19.91 -0.11 -6.00 16 7 C 0.58 19.30 5.34 86.69 0.46 19.76 16 8 O -0.58 -24.23 17.11 -4.01 -0.07 -24.30 16 9 N -0.70 -22.16 5.27 -466.29 -2.46 -24.62 16 10 C 0.15 5.88 3.85 86.38 0.33 6.21 16 11 C 0.17 6.66 2.98 44.98 0.13 6.79 16 12 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 13 C -0.12 -3.99 5.18 30.67 0.16 -3.83 16 14 C -0.10 -3.23 5.88 30.62 0.18 -3.05 16 15 C -0.14 -5.02 6.08 30.67 0.19 -4.84 16 16 C 0.18 8.56 5.25 86.36 0.45 9.02 16 17 N -0.60 -29.78 2.98 -675.24 -2.01 -31.79 16 18 C -0.26 -14.17 8.44 84.03 0.71 -13.46 16 19 H 0.06 3.42 6.37 -2.91 -0.02 3.40 16 20 C -0.04 -2.35 5.04 84.86 0.43 -1.92 16 21 N -0.93 -54.76 11.10 21.65 0.24 -54.52 16 22 Si 0.96 46.17 29.57 68.60 2.03 48.19 16 23 H -0.27 -12.95 7.11 99.48 0.71 -12.24 16 24 H -0.29 -13.69 7.11 99.48 0.71 -12.99 16 25 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 26 C 0.34 9.16 7.77 85.13 0.66 9.82 16 27 O -0.49 -13.07 13.01 -87.27 -1.14 -14.21 16 28 N -0.53 -12.57 10.28 -296.05 -3.04 -15.61 16 29 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.11 0.31 8.07 -2.39 -0.02 0.29 16 32 H 0.19 1.05 8.06 -2.91 -0.02 1.02 16 33 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.11 1.23 8.13 -2.38 -0.02 1.21 16 35 H 0.05 1.12 7.02 -2.39 -0.02 1.11 16 36 H 0.41 10.70 7.89 -92.71 -0.73 9.97 16 37 H 0.05 2.24 7.37 -2.39 -0.02 2.22 16 38 H 0.05 2.20 7.70 -2.38 -0.02 2.18 16 39 H 0.05 1.72 8.14 -2.39 -0.02 1.71 16 40 H 0.08 2.10 7.49 -2.39 -0.02 2.08 16 41 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 42 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 43 H 0.07 2.24 8.14 -2.38 -0.02 2.22 16 44 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 45 H 0.00 0.01 8.14 -2.38 -0.02 -0.01 16 46 H 0.05 2.87 6.16 -2.39 -0.01 2.85 16 47 H 0.25 14.27 8.31 -92.70 -0.77 13.50 16 48 H 0.42 8.18 9.06 -74.05 -0.67 7.51 16 Total: -1.00 -75.45 387.25 -1.47 -76.91 By element: Atomic # 1 Polarization: 22.66 SS G_CDS: -0.41 Total: 22.25 kcal Atomic # 6 Polarization: 12.29 SS G_CDS: 5.40 Total: 17.69 kcal Atomic # 7 Polarization: -119.26 SS G_CDS: -7.27 Total: -126.54 kcal Atomic # 8 Polarization: -37.31 SS G_CDS: -1.20 Total: -38.51 kcal Atomic # 14 Polarization: 46.17 SS G_CDS: 2.03 Total: 48.19 kcal Total: -75.45 -1.47 -76.91 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024583608.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.503 kcal (2) G-P(sol) polarization free energy of solvation -75.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds