Wall clock time and date at job start Tue Mar 31 2020 17:41:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.37998 * 120.82428 * 2 1 4 4 C 1.39117 * 119.26654 * 180.02562 * 3 2 1 5 5 O 1.35499 * 119.52706 * 180.02562 * 4 3 2 6 6 N 1.32438 * 120.95013 * 359.97438 * 4 3 2 7 7 C 1.31629 * 121.79859 * 359.76540 * 6 4 3 8 8 C 1.50710 * 119.68798 * 180.24425 * 7 6 4 9 9 C 1.39560 * 120.62906 * 0.50106 * 7 6 4 10 10 C 1.47616 * 120.50432 * 179.76791 * 9 7 6 11 11 O 1.21580 * 119.99892 * 274.42932 * 10 9 7 12 12 N 1.34780 * 120.00220 * 94.14572 * 10 9 7 13 13 C 1.46491 * 120.00420 * 175.61230 * 12 10 9 14 14 C 1.52996 * 109.47502 * 185.37027 * 13 12 10 15 15 H 1.09010 * 109.58262 * 307.06847 * 14 13 12 16 16 C 1.53193 * 109.58923 * 67.34722 * 14 13 12 17 17 C 1.53045 * 109.31259 * 174.42665 * 16 14 13 18 18 C 1.53046 * 109.53557 * 298.63587 * 17 16 14 19 19 C 1.53194 * 109.31018 * 61.36693 * 18 17 16 20 20 N 1.46918 * 108.77708 * 305.36202 * 19 18 17 21 21 C 1.36942 * 120.63026 * 233.58996 * 20 19 18 22 22 H 1.07998 * 120.00104 * 146.83053 * 21 20 19 23 23 C 1.38810 * 120.00009 * 326.82284 * 21 20 19 24 24 N 1.31625 * 119.99760 * 350.66891 * 23 21 20 25 25 Si 1.86797 * 120.00049 * 170.66370 * 23 21 20 26 26 H 1.48496 * 109.47076 * 5.00516 * 25 23 21 27 27 H 1.48500 * 109.47033 * 125.01090 * 25 23 21 28 28 H 1.48500 * 109.47236 * 245.01016 * 25 23 21 29 29 H 1.08992 * 109.46619 * 269.97667 * 1 2 3 30 30 H 1.09001 * 109.46544 * 29.97907 * 1 2 3 31 31 H 1.09000 * 109.46880 * 149.97262 * 1 2 3 32 32 H 1.08000 * 120.36052 * 359.97438 * 3 2 1 33 33 H 0.96699 * 113.99937 * 89.99858 * 5 4 3 34 34 H 1.08995 * 109.47083 * 273.71657 * 8 7 6 35 35 H 1.09001 * 109.46594 * 33.71761 * 8 7 6 36 36 H 1.08996 * 109.47071 * 153.71405 * 8 7 6 37 37 H 0.97006 * 119.99814 * 355.62010 * 12 10 9 38 38 H 1.09003 * 109.47103 * 305.37000 * 13 12 10 39 39 H 1.08999 * 109.47377 * 65.36211 * 13 12 10 40 40 H 1.08998 * 109.49921 * 294.37599 * 16 14 13 41 41 H 1.08999 * 109.49506 * 54.44472 * 16 14 13 42 42 H 1.08995 * 109.46116 * 58.65435 * 17 16 14 43 43 H 1.08996 * 109.45513 * 178.63369 * 17 16 14 44 44 H 1.09004 * 109.49396 * 181.31933 * 18 17 16 45 45 H 1.09002 * 109.49788 * 301.41531 * 18 17 16 46 46 H 1.08997 * 109.58756 * 65.15554 * 19 18 17 47 47 H 1.09006 * 109.57908 * 185.43162 * 19 18 17 48 48 H 0.97006 * 119.99445 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2142 1.1850 0.0000 4 6 3.6048 1.1472 -0.0005 5 8 4.3044 2.3077 0.0000 6 7 4.2548 -0.0067 -0.0005 7 6 3.6205 -1.1600 0.0045 8 6 4.4080 -2.4450 0.0099 9 6 2.2256 -1.2044 -0.0003 10 6 1.5171 -2.4994 0.0002 11 8 1.3005 -3.0743 -1.0490 12 7 1.1155 -3.0474 1.1643 13 6 0.3289 -4.2832 1.1593 14 6 -0.1077 -4.6157 2.5875 15 1 0.7633 -4.6252 3.2429 16 6 -1.1073 -3.5632 3.0771 17 6 -1.6450 -3.9756 4.4494 18 6 -2.3739 -5.3162 4.3316 19 6 -1.3885 -6.3885 3.8562 20 7 -0.7587 -5.9327 2.6096 21 6 -0.7777 -6.7204 1.4896 22 1 -0.8299 -6.2666 0.5110 23 6 -0.7297 -8.1023 1.6122 24 7 -0.4819 -8.6509 2.7827 25 14 -1.0170 -9.1832 0.1160 26 1 -1.1530 -8.3303 -1.0920 27 1 0.1337 -10.1059 -0.0563 28 1 -2.2602 -9.9726 0.3070 29 1 -0.3632 -0.0004 1.0276 30 1 -0.3632 0.8902 -0.5135 31 1 -0.3633 -0.8898 -0.5143 32 1 1.6936 2.1313 -0.0004 33 1 4.5078 2.6439 0.8835 34 1 4.6545 -2.7243 -1.0145 35 1 5.3268 -2.3056 0.5795 36 1 3.8124 -3.2343 0.4685 37 1 1.3472 -2.6233 2.0054 38 1 -0.5523 -4.1505 0.5316 39 1 0.9357 -5.0986 0.7657 40 1 -0.6087 -2.5973 3.1571 41 1 -1.9331 -3.4889 2.3696 42 1 -0.8158 -4.0735 5.1499 43 1 -2.3382 -3.2161 4.8109 44 1 -2.7768 -5.5979 5.3045 45 1 -3.1881 -5.2257 3.6125 46 1 -0.6233 -6.5444 4.6165 47 1 -1.9224 -7.3221 3.6783 48 1 -0.4487 -9.6166 2.8684 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001024808112.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:41:26 Heat of formation + Delta-G solvation = -33.354843 kcal Electronic energy + Delta-G solvation = -29381.321988 eV Core-core repulsion = 25436.566452 eV Total energy + Delta-G solvation = -3944.755536 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.11453 -39.34763 -37.88506 -37.27216 -34.56764 -34.46109 -33.13756 -32.13308 -30.82774 -29.81973 -28.32063 -28.03302 -25.94183 -25.01045 -23.64723 -22.15051 -21.56572 -20.87937 -20.54511 -19.17450 -18.70331 -17.82492 -17.43670 -16.43649 -16.11820 -15.74993 -14.91847 -14.77522 -14.48320 -14.31582 -14.02364 -13.88222 -13.58887 -13.52813 -13.41904 -13.36411 -13.00989 -12.92858 -12.58519 -12.47389 -12.36959 -12.29265 -12.11282 -11.87748 -11.69581 -11.20150 -10.93171 -10.75440 -10.60774 -10.30733 -10.19700 -10.12070 -9.99766 -9.80628 -9.61229 -9.49826 -9.38508 -9.03593 -8.75983 -8.50141 -6.64702 -5.82964 -3.33848 0.52996 0.87294 2.63234 2.99698 3.36132 3.37432 3.39265 3.44827 3.48238 4.19982 4.27514 4.45546 4.65273 4.76541 4.93615 5.09099 5.23824 5.24500 5.29789 5.31582 5.32525 5.47537 5.48959 5.56655 5.64952 5.65820 5.72887 5.87095 5.90795 5.91893 5.94613 6.10953 6.18205 6.29307 6.30769 6.49125 6.55397 6.65120 6.71704 6.74503 6.87705 6.96508 7.13403 7.36896 7.59083 7.64927 7.65846 7.77884 8.30276 8.43192 9.17096 9.77384 10.35339 11.24519 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.015015 B = 0.003161 C = 0.002845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1864.374587 B = 8855.275495 C = 9839.703296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.012 3.988 3 C -0.197 4.197 4 C 0.328 3.672 5 O -0.481 6.481 6 N -0.508 5.508 7 C 0.196 3.804 8 C -0.112 4.112 9 C -0.187 4.187 10 C 0.567 3.433 11 O -0.526 6.526 12 N -0.715 5.715 13 C 0.126 3.874 14 C 0.166 3.834 15 H 0.029 0.971 16 C -0.130 4.130 17 C -0.109 4.109 18 C -0.145 4.145 19 C 0.175 3.825 20 N -0.583 5.583 21 C -0.260 4.260 22 H 0.069 0.931 23 C 0.011 3.989 24 N -0.901 5.901 25 Si 0.901 3.099 26 H -0.275 1.275 27 H -0.289 1.289 28 H -0.289 1.289 29 H 0.086 0.914 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.145 0.855 33 H 0.402 0.598 34 H 0.088 0.912 35 H 0.085 0.915 36 H 0.081 0.919 37 H 0.397 0.603 38 H 0.070 0.930 39 H 0.084 0.916 40 H 0.045 0.955 41 H 0.059 0.941 42 H 0.052 0.948 43 H 0.043 0.957 44 H 0.046 0.954 45 H 0.053 0.947 46 H 0.018 0.982 47 H 0.087 0.913 48 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.921 19.293 1.358 19.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.004 3.996 3 C -0.219 4.219 4 C 0.150 3.850 5 O -0.289 6.289 6 N -0.228 5.228 7 C 0.057 3.943 8 C -0.169 4.169 9 C -0.193 4.193 10 C 0.350 3.650 11 O -0.402 6.402 12 N -0.366 5.366 13 C 0.003 3.997 14 C 0.059 3.941 15 H 0.047 0.953 16 C -0.169 4.169 17 C -0.146 4.146 18 C -0.184 4.184 19 C 0.050 3.950 20 N -0.307 5.307 21 C -0.389 4.389 22 H 0.087 0.913 23 C -0.189 4.189 24 N -0.544 5.544 25 Si 0.730 3.270 26 H -0.200 1.200 27 H -0.216 1.216 28 H -0.215 1.215 29 H 0.105 0.895 30 H 0.097 0.903 31 H 0.098 0.902 32 H 0.163 0.837 33 H 0.260 0.740 34 H 0.107 0.893 35 H 0.103 0.897 36 H 0.100 0.900 37 H 0.230 0.770 38 H 0.089 0.911 39 H 0.102 0.898 40 H 0.064 0.936 41 H 0.078 0.922 42 H 0.071 0.929 43 H 0.061 0.939 44 H 0.065 0.935 45 H 0.072 0.928 46 H 0.036 0.964 47 H 0.105 0.895 48 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 4.616 18.682 0.023 19.244 hybrid contribution -0.786 -0.175 0.214 0.833 sum 3.830 18.508 0.237 18.901 Atomic orbital electron populations 1.20955 0.89201 1.04288 1.03713 1.20231 0.97024 0.90827 0.91539 1.21854 0.93697 0.99318 1.06986 1.19236 0.87040 0.85026 0.93729 1.84731 1.76022 1.34105 1.34021 1.66980 1.41882 0.97826 1.16065 1.21075 0.89236 0.93126 0.90849 1.20877 1.00343 0.91459 1.04260 1.20820 0.94875 0.94625 1.08934 1.17791 0.78796 0.83945 0.84442 1.90852 1.55814 1.62109 1.31422 1.46165 1.54905 1.27681 1.07811 1.21683 0.95186 0.84239 0.98566 1.20537 0.93216 0.87867 0.92475 0.95314 1.22081 0.99894 0.97560 0.97375 1.21381 0.99168 0.97354 0.96734 1.22211 0.99787 0.96811 0.99587 1.20768 0.92633 0.95127 0.86468 1.43915 1.62111 1.14547 1.10161 1.19186 1.45769 0.87589 0.86367 0.91336 1.25204 0.99467 0.97597 0.96624 1.69990 1.51788 1.10057 1.22615 0.86243 0.77442 0.80627 0.82666 1.19973 1.21577 1.21548 0.89530 0.90272 0.90213 0.83700 0.74000 0.89322 0.89664 0.90018 0.76964 0.91138 0.89815 0.93610 0.92206 0.92927 0.93863 0.93488 0.92813 0.96417 0.89505 0.93608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.15 9.69 36.01 0.35 -0.80 16 2 C 0.01 0.13 5.95 -103.95 -0.62 -0.49 16 3 C -0.20 -1.90 9.72 -39.34 -0.38 -2.28 16 4 C 0.33 3.62 7.74 -16.96 -0.13 3.49 16 5 O -0.48 -4.30 13.55 -18.19 -0.25 -4.55 16 6 N -0.51 -6.55 10.28 -9.20 -0.09 -6.64 16 7 C 0.20 2.53 6.82 -82.18 -0.56 1.97 16 8 C -0.11 -1.31 9.85 36.01 0.35 -0.95 16 9 C -0.19 -2.44 5.65 -104.82 -0.59 -3.03 16 10 C 0.57 8.67 4.26 -12.43 -0.05 8.62 16 11 O -0.53 -10.26 17.11 5.29 0.09 -10.17 16 12 N -0.71 -10.20 5.30 -61.33 -0.32 -10.52 16 13 C 0.13 2.27 3.85 -4.05 -0.02 2.26 16 14 C 0.17 3.12 2.96 -67.60 -0.20 2.92 16 15 H 0.03 0.56 8.14 -51.92 -0.42 0.14 16 16 C -0.13 -2.04 5.20 -26.61 -0.14 -2.18 16 17 C -0.11 -1.71 5.88 -26.68 -0.16 -1.86 16 18 C -0.14 -2.64 6.08 -26.61 -0.16 -2.80 16 19 C 0.18 3.98 5.23 -3.71 -0.02 3.96 16 20 N -0.58 -13.60 2.98 -164.78 -0.49 -14.09 16 21 C -0.26 -6.73 8.38 -15.06 -0.13 -6.86 16 22 H 0.07 1.78 6.44 -52.49 -0.34 1.44 16 23 C 0.01 0.28 5.07 -17.43 -0.09 0.19 16 24 N -0.90 -25.24 11.11 55.49 0.62 -24.63 16 25 Si 0.90 21.44 29.56 -169.99 -5.03 16.42 16 26 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 27 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 28 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 29 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.08 0.57 8.10 -51.93 -0.42 0.15 16 31 H 0.08 0.90 7.19 -51.93 -0.37 0.53 16 32 H 0.15 1.00 8.06 -52.49 -0.42 0.58 16 33 H 0.40 1.44 9.06 45.56 0.41 1.85 16 34 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.08 1.00 6.94 -51.93 -0.36 0.64 16 37 H 0.40 4.67 8.03 -40.82 -0.33 4.34 16 38 H 0.07 1.37 7.78 -51.93 -0.40 0.97 16 39 H 0.08 1.77 7.26 -51.93 -0.38 1.39 16 40 H 0.05 0.59 7.63 -51.93 -0.40 0.19 16 41 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 42 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 43 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 45 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 46 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 47 H 0.09 2.23 6.21 -51.93 -0.32 1.91 16 48 H 0.25 6.91 8.31 -40.82 -0.34 6.58 16 LS Contribution 385.97 15.07 5.82 5.82 Total: -1.00 -32.39 385.97 -8.89 -41.28 By element: Atomic # 1 Polarization: 11.61 SS G_CDS: -6.69 Total: 4.92 kcal Atomic # 6 Polarization: 4.70 SS G_CDS: -2.54 Total: 2.15 kcal Atomic # 7 Polarization: -55.59 SS G_CDS: -0.29 Total: -55.88 kcal Atomic # 8 Polarization: -14.56 SS G_CDS: -0.16 Total: -14.72 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.03 Total: 16.42 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -32.39 -8.89 -41.28 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024808112.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.929 kcal (2) G-P(sol) polarization free energy of solvation -32.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds