Wall clock time and date at job start Tue Mar 31 2020 17:41:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.37998 * 120.82428 * 2 1 4 4 C 1.39117 * 119.26654 * 180.02562 * 3 2 1 5 5 O 1.35499 * 119.52706 * 180.02562 * 4 3 2 6 6 N 1.32438 * 120.95013 * 359.97438 * 4 3 2 7 7 C 1.31629 * 121.79859 * 359.76540 * 6 4 3 8 8 C 1.50710 * 119.68798 * 180.24425 * 7 6 4 9 9 C 1.39560 * 120.62906 * 0.50106 * 7 6 4 10 10 C 1.47616 * 120.50432 * 179.76791 * 9 7 6 11 11 O 1.21580 * 119.99892 * 274.42932 * 10 9 7 12 12 N 1.34780 * 120.00220 * 94.14572 * 10 9 7 13 13 C 1.46491 * 120.00420 * 175.61230 * 12 10 9 14 14 C 1.52996 * 109.47502 * 185.37027 * 13 12 10 15 15 H 1.09010 * 109.58262 * 307.06847 * 14 13 12 16 16 C 1.53193 * 109.58923 * 67.34722 * 14 13 12 17 17 C 1.53045 * 109.31259 * 174.42665 * 16 14 13 18 18 C 1.53046 * 109.53557 * 298.63587 * 17 16 14 19 19 C 1.53194 * 109.31018 * 61.36693 * 18 17 16 20 20 N 1.46918 * 108.77708 * 305.36202 * 19 18 17 21 21 C 1.36942 * 120.63026 * 233.58996 * 20 19 18 22 22 H 1.07998 * 120.00104 * 146.83053 * 21 20 19 23 23 C 1.38810 * 120.00009 * 326.82284 * 21 20 19 24 24 N 1.31625 * 119.99760 * 350.66891 * 23 21 20 25 25 Si 1.86797 * 120.00049 * 170.66370 * 23 21 20 26 26 H 1.48496 * 109.47076 * 5.00516 * 25 23 21 27 27 H 1.48500 * 109.47033 * 125.01090 * 25 23 21 28 28 H 1.48500 * 109.47236 * 245.01016 * 25 23 21 29 29 H 1.08992 * 109.46619 * 269.97667 * 1 2 3 30 30 H 1.09001 * 109.46544 * 29.97907 * 1 2 3 31 31 H 1.09000 * 109.46880 * 149.97262 * 1 2 3 32 32 H 1.08000 * 120.36052 * 359.97438 * 3 2 1 33 33 H 0.96699 * 113.99937 * 89.99858 * 5 4 3 34 34 H 1.08995 * 109.47083 * 273.71657 * 8 7 6 35 35 H 1.09001 * 109.46594 * 33.71761 * 8 7 6 36 36 H 1.08996 * 109.47071 * 153.71405 * 8 7 6 37 37 H 0.97006 * 119.99814 * 355.62010 * 12 10 9 38 38 H 1.09003 * 109.47103 * 305.37000 * 13 12 10 39 39 H 1.08999 * 109.47377 * 65.36211 * 13 12 10 40 40 H 1.08998 * 109.49921 * 294.37599 * 16 14 13 41 41 H 1.08999 * 109.49506 * 54.44472 * 16 14 13 42 42 H 1.08995 * 109.46116 * 58.65435 * 17 16 14 43 43 H 1.08996 * 109.45513 * 178.63369 * 17 16 14 44 44 H 1.09004 * 109.49396 * 181.31933 * 18 17 16 45 45 H 1.09002 * 109.49788 * 301.41531 * 18 17 16 46 46 H 1.08997 * 109.58756 * 65.15554 * 19 18 17 47 47 H 1.09006 * 109.57908 * 185.43162 * 19 18 17 48 48 H 0.97006 * 119.99445 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2142 1.1850 0.0000 4 6 3.6048 1.1472 -0.0005 5 8 4.3044 2.3077 0.0000 6 7 4.2548 -0.0067 -0.0005 7 6 3.6205 -1.1600 0.0045 8 6 4.4080 -2.4450 0.0099 9 6 2.2256 -1.2044 -0.0003 10 6 1.5171 -2.4994 0.0002 11 8 1.3005 -3.0743 -1.0490 12 7 1.1155 -3.0474 1.1643 13 6 0.3289 -4.2832 1.1593 14 6 -0.1077 -4.6157 2.5875 15 1 0.7633 -4.6252 3.2429 16 6 -1.1073 -3.5632 3.0771 17 6 -1.6450 -3.9756 4.4494 18 6 -2.3739 -5.3162 4.3316 19 6 -1.3885 -6.3885 3.8562 20 7 -0.7587 -5.9327 2.6096 21 6 -0.7777 -6.7204 1.4896 22 1 -0.8299 -6.2666 0.5110 23 6 -0.7297 -8.1023 1.6122 24 7 -0.4819 -8.6509 2.7827 25 14 -1.0170 -9.1832 0.1160 26 1 -1.1530 -8.3303 -1.0920 27 1 0.1337 -10.1059 -0.0563 28 1 -2.2602 -9.9726 0.3070 29 1 -0.3632 -0.0004 1.0276 30 1 -0.3632 0.8902 -0.5135 31 1 -0.3633 -0.8898 -0.5143 32 1 1.6936 2.1313 -0.0004 33 1 4.5078 2.6439 0.8835 34 1 4.6545 -2.7243 -1.0145 35 1 5.3268 -2.3056 0.5795 36 1 3.8124 -3.2343 0.4685 37 1 1.3472 -2.6233 2.0054 38 1 -0.5523 -4.1505 0.5316 39 1 0.9357 -5.0986 0.7657 40 1 -0.6087 -2.5973 3.1571 41 1 -1.9331 -3.4889 2.3696 42 1 -0.8158 -4.0735 5.1499 43 1 -2.3382 -3.2161 4.8109 44 1 -2.7768 -5.5979 5.3045 45 1 -3.1881 -5.2257 3.6125 46 1 -0.6233 -6.5444 4.6165 47 1 -1.9224 -7.3221 3.6783 48 1 -0.4487 -9.6166 2.8684 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001024808112.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:41:25 Heat of formation + Delta-G solvation = -58.364442 kcal Electronic energy + Delta-G solvation = -29382.406486 eV Core-core repulsion = 25436.566452 eV Total energy + Delta-G solvation = -3945.840033 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.06030 -40.54692 -39.35622 -38.14048 -35.93428 -35.37684 -34.91878 -33.17675 -32.34290 -31.47949 -29.08935 -29.01717 -27.47925 -26.70113 -24.65134 -23.79990 -22.42216 -22.30354 -21.82005 -20.73613 -19.50457 -19.07727 -18.32077 -18.14172 -17.39135 -16.83115 -16.56385 -16.11483 -15.79498 -15.62732 -15.25236 -15.06528 -14.89344 -14.78483 -14.46513 -14.33346 -14.24751 -14.15860 -13.96913 -13.86143 -13.38166 -13.32547 -13.14676 -12.94974 -12.90439 -12.77451 -12.61577 -12.49281 -12.39798 -11.98805 -11.79794 -11.53913 -11.35779 -11.12044 -11.01292 -10.63555 -10.54719 -10.53566 -10.13829 -9.91263 -8.57505 -7.86232 -5.38071 -0.33681 0.03953 1.40883 1.42899 1.46477 1.55468 1.97862 2.36139 2.50424 2.57043 3.29715 3.36717 3.44033 3.56639 3.75099 3.95654 3.97953 4.15112 4.18823 4.22561 4.28485 4.38671 4.39205 4.50240 4.54665 4.55286 4.63067 4.66431 4.81014 4.82353 4.93972 4.96064 5.05102 5.09145 5.11615 5.14076 5.19906 5.29590 5.32965 5.40830 5.43220 5.48428 5.63602 5.71042 5.84089 6.41358 6.45019 6.56082 6.79792 7.09884 7.18009 7.86328 8.38058 9.18563 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.015015 B = 0.003161 C = 0.002845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1864.374587 B = 8855.275495 C = 9839.703296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.014 3.986 3 C -0.185 4.185 4 C 0.329 3.671 5 O -0.486 6.486 6 N -0.529 5.529 7 C 0.187 3.813 8 C -0.111 4.111 9 C -0.206 4.206 10 C 0.577 3.423 11 O -0.574 6.574 12 N -0.698 5.698 13 C 0.145 3.855 14 C 0.165 3.835 15 H 0.030 0.970 16 C -0.120 4.120 17 C -0.104 4.104 18 C -0.136 4.136 19 C 0.179 3.821 20 N -0.602 5.602 21 C -0.255 4.255 22 H 0.064 0.936 23 C -0.041 4.041 24 N -0.930 5.930 25 Si 0.954 3.046 26 H -0.272 1.272 27 H -0.293 1.293 28 H -0.287 1.287 29 H 0.106 0.894 30 H 0.104 0.896 31 H 0.052 0.948 32 H 0.180 0.820 33 H 0.425 0.575 34 H 0.084 0.916 35 H 0.099 0.901 36 H 0.069 0.931 37 H 0.413 0.587 38 H 0.055 0.945 39 H 0.045 0.955 40 H 0.085 0.915 41 H 0.052 0.948 42 H 0.057 0.943 43 H 0.077 0.923 44 H 0.065 0.935 45 H 0.047 0.953 46 H -0.002 1.002 47 H 0.049 0.951 48 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.522 23.117 2.143 23.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.006 3.994 3 C -0.206 4.206 4 C 0.150 3.850 5 O -0.297 6.297 6 N -0.250 5.250 7 C 0.049 3.951 8 C -0.168 4.168 9 C -0.211 4.211 10 C 0.362 3.638 11 O -0.453 6.453 12 N -0.349 5.349 13 C 0.021 3.979 14 C 0.058 3.942 15 H 0.047 0.953 16 C -0.159 4.159 17 C -0.142 4.142 18 C -0.175 4.175 19 C 0.054 3.946 20 N -0.326 5.326 21 C -0.385 4.385 22 H 0.081 0.919 23 C -0.238 4.238 24 N -0.576 5.576 25 Si 0.783 3.217 26 H -0.197 1.197 27 H -0.220 1.220 28 H -0.214 1.214 29 H 0.124 0.876 30 H 0.122 0.878 31 H 0.071 0.929 32 H 0.197 0.803 33 H 0.288 0.712 34 H 0.102 0.898 35 H 0.118 0.882 36 H 0.088 0.912 37 H 0.250 0.750 38 H 0.073 0.927 39 H 0.064 0.936 40 H 0.104 0.896 41 H 0.071 0.929 42 H 0.076 0.924 43 H 0.096 0.904 44 H 0.084 0.916 45 H 0.065 0.935 46 H 0.016 0.984 47 H 0.067 0.933 48 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 4.230 22.570 0.856 22.979 hybrid contribution -0.589 -1.220 -0.023 1.355 sum 3.641 21.350 0.832 21.674 Atomic orbital electron populations 1.21018 0.87856 1.04200 1.04930 1.20476 0.97968 0.90355 0.90581 1.22116 0.93077 1.00089 1.05294 1.19513 0.87848 0.85015 0.92577 1.84687 1.75823 1.33028 1.36181 1.66989 1.42490 0.98345 1.17183 1.21097 0.89252 0.93503 0.91270 1.20860 1.00791 0.91070 1.04125 1.20615 0.94955 0.93924 1.11642 1.18109 0.77729 0.84359 0.83563 1.90825 1.57702 1.63666 1.33145 1.45884 1.54135 1.26289 1.08634 1.21186 0.94187 0.84671 0.97835 1.20706 0.94026 0.86718 0.92707 0.95277 1.21980 0.98849 0.97906 0.97169 1.21375 0.99771 0.96360 0.96679 1.22059 0.98445 0.96901 1.00053 1.20586 0.92700 0.95464 0.85853 1.44147 1.63077 1.15861 1.09539 1.19362 1.43937 0.88037 0.87197 0.91881 1.25808 1.00493 0.98814 0.98639 1.70124 1.53721 1.09730 1.24028 0.85398 0.76953 0.79049 0.80273 1.19711 1.22010 1.21418 0.87552 0.87765 0.92857 0.80276 0.71223 0.89783 0.88205 0.91170 0.75030 0.92670 0.93647 0.89636 0.92918 0.92414 0.90419 0.91648 0.93462 0.98428 0.93261 0.94181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.89 9.69 71.24 0.69 -1.20 16 2 C 0.01 0.27 5.95 -19.43 -0.12 0.15 16 3 C -0.19 -2.87 9.72 22.42 0.22 -2.65 16 4 C 0.33 6.31 7.74 84.81 0.66 6.96 16 5 O -0.49 -7.08 13.55 -88.01 -1.19 -8.27 16 6 N -0.53 -12.79 10.28 -295.89 -3.04 -15.83 16 7 C 0.19 4.69 6.82 42.91 0.29 4.98 16 8 C -0.11 -2.62 9.85 71.24 0.70 -1.92 16 9 C -0.21 -5.16 5.65 -19.99 -0.11 -5.27 16 10 C 0.58 17.71 4.26 86.72 0.37 18.08 16 11 O -0.57 -23.19 17.11 -3.97 -0.07 -23.26 16 12 N -0.70 -19.60 5.30 -466.21 -2.47 -22.07 16 13 C 0.15 5.35 3.85 86.38 0.33 5.69 16 14 C 0.16 6.11 2.96 44.97 0.13 6.24 16 15 H 0.03 1.11 8.14 -2.38 -0.02 1.09 16 16 C -0.12 -3.43 5.20 30.67 0.16 -3.27 16 17 C -0.10 -2.92 5.88 30.62 0.18 -2.74 16 18 C -0.14 -4.75 6.08 30.67 0.19 -4.56 16 19 C 0.18 8.32 5.23 86.36 0.45 8.77 16 20 N -0.60 -28.63 2.98 -675.23 -2.01 -30.64 16 21 C -0.25 -13.67 8.38 84.03 0.70 -12.97 16 22 H 0.06 3.40 6.44 -2.91 -0.02 3.38 16 23 C -0.04 -2.31 5.07 84.86 0.43 -1.88 16 24 N -0.93 -54.26 11.11 21.65 0.24 -54.02 16 25 Si 0.95 45.64 29.56 68.60 2.03 47.66 16 26 H -0.27 -12.75 7.11 99.48 0.71 -12.04 16 27 H -0.29 -14.10 7.11 99.48 0.71 -13.39 16 28 H -0.29 -13.56 7.11 99.48 0.71 -12.86 16 29 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.10 1.07 8.10 -2.39 -0.02 1.05 16 31 H 0.05 1.13 7.19 -2.39 -0.02 1.11 16 32 H 0.18 1.52 8.06 -2.91 -0.02 1.50 16 33 H 0.43 1.53 9.06 -74.06 -0.67 0.86 16 34 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 35 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 36 H 0.07 1.77 6.94 -2.39 -0.02 1.75 16 37 H 0.41 8.97 8.03 -92.70 -0.74 8.22 16 38 H 0.05 2.21 7.78 -2.39 -0.02 2.19 16 39 H 0.05 2.02 7.26 -2.39 -0.02 2.01 16 40 H 0.09 1.80 7.63 -2.39 -0.02 1.79 16 41 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 42 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 43 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 44 H 0.06 2.04 8.14 -2.38 -0.02 2.02 16 45 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 46 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 47 H 0.05 2.64 6.21 -2.38 -0.01 2.62 16 48 H 0.25 14.14 8.31 -92.70 -0.77 13.37 16 Total: -1.00 -74.12 385.97 -1.66 -75.78 By element: Atomic # 1 Polarization: 16.65 SS G_CDS: -0.42 Total: 16.23 kcal Atomic # 6 Polarization: 9.14 SS G_CDS: 5.28 Total: 14.42 kcal Atomic # 7 Polarization: -115.28 SS G_CDS: -7.28 Total: -122.56 kcal Atomic # 8 Polarization: -30.27 SS G_CDS: -1.26 Total: -31.53 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 2.03 Total: 47.66 kcal Total: -74.12 -1.66 -75.78 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024808112.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.411 kcal (2) G-P(sol) polarization free energy of solvation -74.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds