Wall clock time and date at job start Tue Mar 31 2020 17:51:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.37991 * 120.81908 * 2 1 4 4 C 1.39128 * 119.26402 * 179.97438 * 3 2 1 5 5 O 1.35499 * 119.52599 * 179.97438 * 4 3 2 6 6 N 1.32432 * 120.95330 * 0.02562 * 4 3 2 7 7 C 1.31639 * 121.79555 * 359.71799 * 6 4 3 8 8 C 1.39563 * 120.62797 * 0.54883 * 7 6 4 9 9 C 1.47612 * 120.50308 * 179.74534 * 8 7 6 10 10 O 1.21580 * 120.00077 * 173.28764 * 9 8 7 11 11 N 1.34772 * 120.00037 * 353.29209 * 9 8 7 12 12 C 1.46503 * 120.00204 * 179.97438 * 11 9 8 13 13 H 1.08992 * 109.47101 * 34.99959 * 12 11 9 14 14 C 1.53004 * 109.47026 * 275.00084 * 12 11 9 15 15 C 1.52998 * 109.46858 * 155.00189 * 12 11 9 16 16 H 1.08995 * 109.50054 * 305.06032 * 15 12 11 17 17 C 1.53044 * 109.49469 * 185.00021 * 15 12 11 18 18 C 1.53046 * 109.52745 * 178.68826 * 17 15 12 19 19 C 1.53159 * 109.32423 * 61.37405 * 18 17 15 20 20 N 1.46930 * 108.76966 * 305.35269 * 19 18 17 21 21 C 1.36938 * 120.63397 * 233.58970 * 20 19 18 22 22 H 1.07998 * 120.00179 * 152.59782 * 21 20 19 23 23 C 1.38814 * 119.99611 * 332.60223 * 21 20 19 24 24 N 1.31620 * 120.00420 * 336.64092 * 23 21 20 25 25 Si 1.86799 * 119.99721 * 156.64709 * 23 21 20 26 26 H 1.48504 * 109.47179 * 94.71533 * 25 23 21 27 27 H 1.48500 * 109.47085 * 214.71478 * 25 23 21 28 28 H 1.48506 * 109.47363 * 334.71406 * 25 23 21 29 29 C 1.46929 * 118.73592 * 53.61087 * 20 19 18 30 30 H 1.09002 * 109.47219 * 263.25074 * 1 2 3 31 31 H 1.08998 * 109.47568 * 23.25130 * 1 2 3 32 32 H 1.09001 * 109.46992 * 143.25223 * 1 2 3 33 33 H 1.08000 * 120.37114 * 0.02562 * 3 2 1 34 34 H 0.96703 * 114.00151 * 89.99870 * 5 4 3 35 35 H 1.07998 * 119.68751 * 180.26535 * 7 6 4 36 36 H 0.97005 * 120.00251 * 0.02562 * 11 9 8 37 37 H 1.08998 * 109.47086 * 60.00074 * 14 12 11 38 38 H 1.09004 * 109.46550 * 180.02562 * 14 12 11 39 39 H 1.09004 * 109.47056 * 299.99459 * 14 12 11 40 40 H 1.08995 * 109.46135 * 298.70329 * 17 15 12 41 41 H 1.08998 * 109.45952 * 58.67555 * 17 15 12 42 42 H 1.08997 * 109.50065 * 181.31104 * 18 17 15 43 43 H 1.09000 * 109.49664 * 301.40945 * 18 17 15 44 44 H 1.09003 * 109.58666 * 185.57415 * 19 18 17 45 45 H 1.09000 * 109.59631 * 65.13953 * 19 18 17 46 46 H 0.96993 * 120.00278 * 180.02562 * 24 23 21 47 47 H 1.08997 * 109.58723 * 186.60184 * 29 20 19 48 48 H 1.08999 * 109.58342 * 66.18379 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2139 1.1851 0.0000 4 6 3.6047 1.1473 0.0005 5 8 4.3042 2.3078 0.0000 6 7 4.2548 -0.0065 0.0005 7 6 3.6205 -1.1600 0.0056 8 6 2.2256 -1.2044 -0.0004 9 6 1.5172 -2.4994 -0.0004 10 8 0.3075 -2.5306 0.1174 11 7 2.2113 -3.6472 -0.1310 12 6 1.5083 -4.9326 -0.1305 13 1 0.5421 -4.8184 -0.6217 14 6 1.2956 -5.3969 1.3118 15 6 2.3433 -5.9708 -0.8826 16 1 2.5712 -5.5998 -1.8818 17 6 1.5558 -7.2786 -0.9906 18 6 2.3771 -8.3073 -1.7713 19 6 3.6818 -8.5896 -1.0203 20 7 4.3765 -7.3166 -0.7846 21 6 5.6783 -7.1494 -1.1750 22 1 6.0472 -6.1636 -1.4171 23 6 6.5239 -8.2470 -1.2597 24 7 6.2657 -9.3322 -0.5611 25 14 8.0285 -8.1838 -2.3650 26 1 9.2118 -7.7728 -1.5674 27 1 8.2688 -9.5269 -2.9511 28 1 7.8009 -7.2015 -3.4552 29 6 3.6479 -6.2265 -0.1215 30 1 -0.3634 -0.1208 1.0206 31 1 -0.3634 0.9442 -0.4057 32 1 -0.3633 -0.8235 -0.6149 33 1 1.6935 2.1314 0.0004 34 1 4.5069 2.6452 0.8833 35 1 4.1849 -2.0807 0.0097 36 1 3.1765 -3.6224 -0.2246 37 1 0.7007 -4.6572 1.8476 38 1 0.7729 -6.3534 1.3121 39 1 2.2619 -5.5111 1.8030 40 1 1.3491 -7.6616 0.0086 41 1 0.6157 -7.0944 -1.5106 42 1 1.8063 -9.2309 -1.8681 43 1 2.6052 -7.9146 -2.7621 44 1 4.3137 -9.2452 -1.6194 45 1 3.4584 -9.0662 -0.0658 46 1 6.8567 -10.0990 -0.6199 47 1 4.2575 -5.3229 -0.1274 48 1 3.4218 -6.5103 0.9063 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025533971.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:51:41 Heat of formation + Delta-G solvation = -25.527009 kcal Electronic energy + Delta-G solvation = -29145.184965 eV Core-core repulsion = 25200.768870 eV Total energy + Delta-G solvation = -3944.416095 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.14906 -39.70512 -38.18504 -37.24487 -35.40729 -34.02927 -33.12818 -31.73339 -30.49338 -30.17541 -28.28470 -27.98025 -25.32335 -24.84610 -23.82328 -22.53723 -22.22158 -21.03569 -20.29641 -18.84297 -18.66515 -17.93103 -17.29798 -16.64848 -16.18556 -15.75351 -15.24396 -15.04894 -14.86346 -14.48683 -14.34878 -13.88461 -13.63763 -13.48875 -13.33444 -13.15545 -13.01413 -12.83195 -12.62194 -12.49098 -12.38282 -12.28878 -12.00340 -11.82756 -11.64283 -11.06978 -10.90013 -10.60180 -10.50545 -10.24663 -10.20950 -10.09736 -9.90762 -9.89682 -9.68623 -9.52909 -9.42415 -9.34456 -8.94366 -8.45996 -6.71793 -5.84092 -3.21794 0.26192 0.84029 2.61176 3.08658 3.20021 3.35703 3.44248 3.47140 3.51743 4.19739 4.35322 4.46239 4.47850 4.70444 4.87571 5.00044 5.15057 5.18158 5.30765 5.34417 5.38237 5.44609 5.49042 5.53670 5.64824 5.66930 5.72312 5.81170 5.95221 6.03630 6.08576 6.16784 6.18588 6.21142 6.30747 6.44951 6.53772 6.58356 6.65901 6.73694 6.81803 6.94075 7.07306 7.32438 7.46846 7.51418 7.57088 7.77719 8.13245 8.39533 9.16286 9.81570 10.38490 11.24475 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.012360 B = 0.003159 C = 0.002604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2264.899405 B = 8862.611619 C =10750.423929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.033 3.967 3 C -0.200 4.200 4 C 0.334 3.666 5 O -0.481 6.481 6 N -0.509 5.509 7 C 0.169 3.831 8 C -0.203 4.203 9 C 0.565 3.435 10 O -0.535 6.535 11 N -0.713 5.713 12 C 0.151 3.849 13 H 0.084 0.916 14 C -0.165 4.165 15 C -0.114 4.114 16 H 0.073 0.927 17 C -0.100 4.100 18 C -0.142 4.142 19 C 0.171 3.829 20 N -0.590 5.590 21 C -0.259 4.259 22 H 0.065 0.935 23 C 0.007 3.993 24 N -0.894 5.894 25 Si 0.894 3.106 26 H -0.287 1.287 27 H -0.289 1.289 28 H -0.278 1.278 29 C 0.151 3.849 30 H 0.084 0.916 31 H 0.063 0.937 32 H 0.102 0.898 33 H 0.146 0.854 34 H 0.404 0.596 35 H 0.167 0.833 36 H 0.401 0.599 37 H 0.053 0.947 38 H 0.068 0.932 39 H 0.066 0.934 40 H 0.059 0.941 41 H 0.047 0.953 42 H 0.050 0.950 43 H 0.054 0.946 44 H 0.079 0.921 45 H 0.019 0.981 46 H 0.254 0.746 47 H 0.046 0.954 48 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.357 17.137 3.178 20.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.025 3.975 3 C -0.221 4.221 4 C 0.157 3.843 5 O -0.289 6.289 6 N -0.228 5.228 7 C 0.010 3.990 8 C -0.209 4.209 9 C 0.352 3.648 10 O -0.414 6.414 11 N -0.365 5.365 12 C 0.046 3.954 13 H 0.102 0.898 14 C -0.223 4.223 15 C -0.135 4.135 16 H 0.091 0.909 17 C -0.138 4.138 18 C -0.181 4.181 19 C 0.045 3.955 20 N -0.312 5.312 21 C -0.389 4.389 22 H 0.082 0.918 23 C -0.192 4.192 24 N -0.538 5.538 25 Si 0.723 3.277 26 H -0.214 1.214 27 H -0.215 1.215 28 H -0.204 1.204 29 C 0.024 3.976 30 H 0.102 0.898 31 H 0.082 0.918 32 H 0.120 0.880 33 H 0.164 0.836 34 H 0.263 0.737 35 H 0.184 0.816 36 H 0.238 0.762 37 H 0.072 0.928 38 H 0.087 0.913 39 H 0.085 0.915 40 H 0.078 0.922 41 H 0.065 0.935 42 H 0.068 0.932 43 H 0.073 0.927 44 H 0.097 0.903 45 H 0.037 0.963 46 H 0.063 0.937 47 H 0.065 0.935 48 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -11.223 16.966 2.668 20.517 hybrid contribution 0.705 0.085 -0.123 0.720 sum -10.519 17.051 2.545 20.196 Atomic orbital electron populations 1.21103 0.88665 1.03663 1.04334 1.20369 0.97669 0.90599 0.88845 1.21986 0.93706 0.99554 1.06878 1.19395 0.87102 0.85278 0.92556 1.84717 1.75985 1.34064 1.34143 1.67197 1.42004 0.98226 1.15345 1.22826 0.90355 0.95396 0.90458 1.20951 0.95085 0.94721 1.10111 1.17845 0.86939 0.83337 0.76723 1.90721 1.13470 1.87133 1.50098 1.46149 1.11235 1.05864 1.73204 1.21076 0.96129 0.81357 0.96793 0.89790 1.22265 1.02508 1.01364 0.96184 1.21974 0.97399 0.94187 0.99951 0.90870 1.21412 0.97087 0.94900 1.00381 1.22159 0.98890 0.97308 0.99760 1.20722 0.89797 0.88259 0.96718 1.44024 1.09544 1.10352 1.67260 1.19104 0.86339 0.94182 1.39244 0.91763 1.24953 0.97432 0.97670 0.99176 1.70115 1.39011 1.05545 1.39099 0.86423 0.83006 0.77053 0.81181 1.21443 1.21545 1.20372 1.20996 0.90441 0.92247 0.93893 0.89775 0.91788 0.88010 0.83597 0.73719 0.81617 0.76247 0.92838 0.91306 0.91508 0.92187 0.93472 0.93174 0.92715 0.90304 0.96332 0.93652 0.93515 0.95589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.12 8.82 36.00 0.32 -0.80 16 2 C 0.03 0.35 5.95 -103.96 -0.62 -0.27 16 3 C -0.20 -1.83 9.70 -39.34 -0.38 -2.21 16 4 C 0.33 3.54 7.74 -16.96 -0.13 3.41 16 5 O -0.48 -4.22 13.55 -18.19 -0.25 -4.47 16 6 N -0.51 -6.28 10.37 -12.97 -0.13 -6.41 16 7 C 0.17 1.91 10.69 -17.14 -0.18 1.73 16 8 C -0.20 -2.35 5.89 -104.82 -0.62 -2.97 16 9 C 0.56 7.31 7.68 -12.44 -0.10 7.21 16 10 O -0.54 -7.95 13.17 5.30 0.07 -7.88 16 11 N -0.71 -8.92 4.96 -54.82 -0.27 -9.19 16 12 C 0.15 2.03 2.35 -67.93 -0.16 1.87 16 13 H 0.08 1.18 7.58 -51.93 -0.39 0.79 16 14 C -0.17 -2.16 8.76 37.16 0.33 -1.83 16 15 C -0.11 -1.79 2.27 -90.50 -0.21 -1.99 16 16 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 17 C -0.10 -1.56 4.89 -26.68 -0.13 -1.69 16 18 C -0.14 -2.58 6.08 -26.62 -0.16 -2.74 16 19 C 0.17 3.90 5.36 -3.73 -0.02 3.88 16 20 N -0.59 -13.97 2.99 -172.34 -0.52 -14.49 16 21 C -0.26 -6.86 9.54 -15.06 -0.14 -7.00 16 22 H 0.06 1.66 7.93 -52.49 -0.42 1.25 16 23 C 0.01 0.19 4.74 -17.43 -0.08 0.11 16 24 N -0.89 -25.46 11.58 55.49 0.64 -24.82 16 25 Si 0.89 21.24 29.61 -169.99 -5.03 16.21 16 26 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 27 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 28 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 29 C 0.15 2.85 5.26 -3.71 -0.02 2.83 16 30 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.06 0.45 8.06 -51.93 -0.42 0.03 16 32 H 0.10 1.14 6.00 -51.93 -0.31 0.83 16 33 H 0.15 0.96 8.06 -52.49 -0.42 0.54 16 34 H 0.40 1.41 9.06 45.56 0.41 1.83 16 35 H 0.17 1.61 6.47 -52.49 -0.34 1.27 16 36 H 0.40 4.64 5.38 -40.82 -0.22 4.42 16 37 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.07 0.87 6.59 -51.93 -0.34 0.52 16 39 H 0.07 0.91 6.23 -51.93 -0.32 0.58 16 40 H 0.06 0.92 6.63 -51.93 -0.34 0.58 16 41 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 44 H 0.08 2.03 6.22 -51.93 -0.32 1.71 16 45 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 46 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 47 H 0.05 0.84 6.75 -51.93 -0.35 0.49 16 48 H 0.03 0.51 6.06 -51.93 -0.31 0.19 16 LS Contribution 375.58 15.07 5.66 5.66 Total: -1.00 -32.27 375.58 -8.34 -40.61 By element: Atomic # 1 Polarization: 11.44 SS G_CDS: -6.20 Total: 5.24 kcal Atomic # 6 Polarization: 1.84 SS G_CDS: -2.31 Total: -0.47 kcal Atomic # 7 Polarization: -54.62 SS G_CDS: -0.28 Total: -54.90 kcal Atomic # 8 Polarization: -12.17 SS G_CDS: -0.18 Total: -12.35 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.03 Total: 16.21 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -32.27 -8.34 -40.61 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025533971.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.084 kcal (2) G-P(sol) polarization free energy of solvation -32.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds