Wall clock time and date at job start Tue Mar 31 2020 17:51:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.37991 * 120.81908 * 2 1 4 4 C 1.39128 * 119.26402 * 179.97438 * 3 2 1 5 5 O 1.35499 * 119.52599 * 179.97438 * 4 3 2 6 6 N 1.32432 * 120.95330 * 0.02562 * 4 3 2 7 7 C 1.31639 * 121.79555 * 359.71799 * 6 4 3 8 8 C 1.39563 * 120.62797 * 0.54883 * 7 6 4 9 9 C 1.47612 * 120.50308 * 179.74534 * 8 7 6 10 10 O 1.21580 * 120.00077 * 173.28764 * 9 8 7 11 11 N 1.34772 * 120.00037 * 353.29209 * 9 8 7 12 12 C 1.46503 * 120.00204 * 179.97438 * 11 9 8 13 13 H 1.08992 * 109.47101 * 34.99959 * 12 11 9 14 14 C 1.53004 * 109.47026 * 275.00084 * 12 11 9 15 15 C 1.52998 * 109.46858 * 155.00189 * 12 11 9 16 16 H 1.08995 * 109.50054 * 305.06032 * 15 12 11 17 17 C 1.53044 * 109.49469 * 185.00021 * 15 12 11 18 18 C 1.53046 * 109.52745 * 178.68826 * 17 15 12 19 19 C 1.53159 * 109.32423 * 61.37405 * 18 17 15 20 20 N 1.46930 * 108.76966 * 305.35269 * 19 18 17 21 21 C 1.36938 * 120.63397 * 233.58970 * 20 19 18 22 22 H 1.07998 * 120.00179 * 152.59782 * 21 20 19 23 23 C 1.38814 * 119.99611 * 332.60223 * 21 20 19 24 24 N 1.31620 * 120.00420 * 336.64092 * 23 21 20 25 25 Si 1.86799 * 119.99721 * 156.64709 * 23 21 20 26 26 H 1.48504 * 109.47179 * 94.71533 * 25 23 21 27 27 H 1.48500 * 109.47085 * 214.71478 * 25 23 21 28 28 H 1.48506 * 109.47363 * 334.71406 * 25 23 21 29 29 C 1.46929 * 118.73592 * 53.61087 * 20 19 18 30 30 H 1.09002 * 109.47219 * 263.25074 * 1 2 3 31 31 H 1.08998 * 109.47568 * 23.25130 * 1 2 3 32 32 H 1.09001 * 109.46992 * 143.25223 * 1 2 3 33 33 H 1.08000 * 120.37114 * 0.02562 * 3 2 1 34 34 H 0.96703 * 114.00151 * 89.99870 * 5 4 3 35 35 H 1.07998 * 119.68751 * 180.26535 * 7 6 4 36 36 H 0.97005 * 120.00251 * 0.02562 * 11 9 8 37 37 H 1.08998 * 109.47086 * 60.00074 * 14 12 11 38 38 H 1.09004 * 109.46550 * 180.02562 * 14 12 11 39 39 H 1.09004 * 109.47056 * 299.99459 * 14 12 11 40 40 H 1.08995 * 109.46135 * 298.70329 * 17 15 12 41 41 H 1.08998 * 109.45952 * 58.67555 * 17 15 12 42 42 H 1.08997 * 109.50065 * 181.31104 * 18 17 15 43 43 H 1.09000 * 109.49664 * 301.40945 * 18 17 15 44 44 H 1.09003 * 109.58666 * 185.57415 * 19 18 17 45 45 H 1.09000 * 109.59631 * 65.13953 * 19 18 17 46 46 H 0.96993 * 120.00278 * 180.02562 * 24 23 21 47 47 H 1.08997 * 109.58723 * 186.60184 * 29 20 19 48 48 H 1.08999 * 109.58342 * 66.18379 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2139 1.1851 0.0000 4 6 3.6047 1.1473 0.0005 5 8 4.3042 2.3078 0.0000 6 7 4.2548 -0.0065 0.0005 7 6 3.6205 -1.1600 0.0056 8 6 2.2256 -1.2044 -0.0004 9 6 1.5172 -2.4994 -0.0004 10 8 0.3075 -2.5306 0.1174 11 7 2.2113 -3.6472 -0.1310 12 6 1.5083 -4.9326 -0.1305 13 1 0.5421 -4.8184 -0.6217 14 6 1.2956 -5.3969 1.3118 15 6 2.3433 -5.9708 -0.8826 16 1 2.5712 -5.5998 -1.8818 17 6 1.5558 -7.2786 -0.9906 18 6 2.3771 -8.3073 -1.7713 19 6 3.6818 -8.5896 -1.0203 20 7 4.3765 -7.3166 -0.7846 21 6 5.6783 -7.1494 -1.1750 22 1 6.0472 -6.1636 -1.4171 23 6 6.5239 -8.2470 -1.2597 24 7 6.2657 -9.3322 -0.5611 25 14 8.0285 -8.1838 -2.3650 26 1 9.2118 -7.7728 -1.5674 27 1 8.2688 -9.5269 -2.9511 28 1 7.8009 -7.2015 -3.4552 29 6 3.6479 -6.2265 -0.1215 30 1 -0.3634 -0.1208 1.0206 31 1 -0.3634 0.9442 -0.4057 32 1 -0.3633 -0.8235 -0.6149 33 1 1.6935 2.1314 0.0004 34 1 4.5069 2.6452 0.8833 35 1 4.1849 -2.0807 0.0097 36 1 3.1765 -3.6224 -0.2246 37 1 0.7007 -4.6572 1.8476 38 1 0.7729 -6.3534 1.3121 39 1 2.2619 -5.5111 1.8030 40 1 1.3491 -7.6616 0.0086 41 1 0.6157 -7.0944 -1.5106 42 1 1.8063 -9.2309 -1.8681 43 1 2.6052 -7.9146 -2.7621 44 1 4.3137 -9.2452 -1.6194 45 1 3.4584 -9.0662 -0.0658 46 1 6.8567 -10.0990 -0.6199 47 1 4.2575 -5.3229 -0.1274 48 1 3.4218 -6.5103 0.9063 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025533971.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:51:40 Heat of formation + Delta-G solvation = -49.214417 kcal Electronic energy + Delta-G solvation = -29146.212128 eV Core-core repulsion = 25200.768870 eV Total energy + Delta-G solvation = -3945.443258 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.00432 -40.72670 -39.48146 -38.03866 -36.75209 -35.00976 -34.55139 -32.98349 -32.26923 -31.18672 -29.45872 -28.86106 -27.19205 -25.81266 -24.94988 -23.87454 -23.39234 -22.30365 -21.47233 -20.16345 -19.45285 -18.98146 -18.52864 -18.09148 -16.99739 -16.84039 -16.70631 -16.20409 -15.96658 -15.84175 -15.62438 -15.25955 -14.98495 -14.69707 -14.44311 -14.11982 -14.09117 -13.95418 -13.81540 -13.61686 -13.55087 -13.33752 -13.21339 -13.05224 -12.76654 -12.70525 -12.61876 -12.28886 -12.02292 -11.96564 -11.64887 -11.48917 -11.26014 -11.05494 -10.98409 -10.70048 -10.48061 -10.44011 -10.20339 -9.94166 -8.65749 -7.87641 -5.27058 -0.54870 0.06297 1.45659 1.49264 1.58240 1.71089 2.09526 2.46828 2.52554 2.69016 3.26284 3.42427 3.57936 3.60545 3.64792 3.89834 3.96713 4.01628 4.08023 4.18462 4.37296 4.42479 4.45534 4.49139 4.62228 4.66807 4.68048 4.72417 4.78735 4.87596 4.90651 5.00144 5.03733 5.08111 5.16006 5.22064 5.30203 5.32386 5.37375 5.44061 5.49726 5.53441 5.60006 5.70582 5.78214 6.39273 6.46886 6.52150 6.76309 7.13470 7.16347 7.89528 8.41258 9.18764 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.012360 B = 0.003159 C = 0.002604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2264.899405 B = 8862.611619 C =10750.423929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.028 3.972 3 C -0.190 4.190 4 C 0.331 3.669 5 O -0.488 6.488 6 N -0.538 5.538 7 C 0.165 3.835 8 C -0.216 4.216 9 C 0.567 3.433 10 O -0.555 6.555 11 N -0.712 5.712 12 C 0.161 3.839 13 H 0.087 0.913 14 C -0.159 4.159 15 C -0.099 4.099 16 H 0.066 0.934 17 C -0.097 4.097 18 C -0.131 4.131 19 C 0.175 3.825 20 N -0.608 5.608 21 C -0.264 4.264 22 H 0.067 0.933 23 C -0.045 4.045 24 N -0.929 5.929 25 Si 0.955 3.045 26 H -0.287 1.287 27 H -0.294 1.294 28 H -0.271 1.271 29 C 0.149 3.851 30 H 0.085 0.915 31 H 0.089 0.911 32 H 0.081 0.919 33 H 0.176 0.824 34 H 0.426 0.574 35 H 0.174 0.826 36 H 0.405 0.595 37 H 0.054 0.946 38 H 0.075 0.925 39 H 0.058 0.942 40 H 0.065 0.935 41 H 0.076 0.924 42 H 0.069 0.931 43 H 0.049 0.951 44 H 0.042 0.958 45 H -0.002 1.002 46 H 0.249 0.751 47 H 0.052 0.948 48 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.623 19.331 2.864 23.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.020 3.980 3 C -0.210 4.210 4 C 0.154 3.846 5 O -0.299 6.299 6 N -0.257 5.257 7 C 0.007 3.993 8 C -0.221 4.221 9 C 0.355 3.645 10 O -0.436 6.436 11 N -0.363 5.363 12 C 0.057 3.943 13 H 0.105 0.895 14 C -0.217 4.217 15 C -0.119 4.119 16 H 0.084 0.916 17 C -0.135 4.135 18 C -0.170 4.170 19 C 0.049 3.951 20 N -0.331 5.331 21 C -0.394 4.394 22 H 0.085 0.915 23 C -0.241 4.241 24 N -0.574 5.574 25 Si 0.783 3.217 26 H -0.214 1.214 27 H -0.221 1.221 28 H -0.196 1.196 29 C 0.024 3.976 30 H 0.103 0.897 31 H 0.108 0.892 32 H 0.100 0.900 33 H 0.194 0.806 34 H 0.288 0.712 35 H 0.191 0.809 36 H 0.242 0.758 37 H 0.073 0.927 38 H 0.094 0.906 39 H 0.077 0.923 40 H 0.083 0.917 41 H 0.094 0.906 42 H 0.088 0.912 43 H 0.068 0.932 44 H 0.061 0.939 45 H 0.016 0.984 46 H 0.058 0.942 47 H 0.070 0.930 48 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -12.496 19.204 2.368 23.033 hybrid contribution 1.103 -0.493 0.026 1.208 sum -11.393 18.711 2.394 22.037 Atomic orbital electron populations 1.21060 0.87829 1.04234 1.04127 1.20608 0.98338 0.90614 0.88434 1.22202 0.93100 1.00297 1.05441 1.19631 0.87838 0.85261 0.91879 1.84670 1.75844 1.33247 1.36189 1.67203 1.42927 0.99010 1.16591 1.22921 0.90414 0.95633 0.90381 1.20884 0.95186 0.94508 1.11567 1.18009 0.86689 0.83714 0.76069 1.90715 1.14286 1.87453 1.51120 1.46104 1.11433 1.05603 1.73182 1.20890 0.95638 0.81099 0.96708 0.89535 1.22209 1.02129 1.01747 0.95660 1.21748 0.95913 0.95073 0.99207 0.91586 1.21408 0.97654 0.93775 1.00629 1.21997 0.96880 0.99181 0.98944 1.20568 0.91348 0.87552 0.95626 1.44287 1.09245 1.11507 1.68033 1.19453 0.87538 0.94229 1.38161 0.91524 1.25636 1.00239 0.97662 1.00593 1.70238 1.40237 1.06126 1.40830 0.85467 0.80002 0.76662 0.79561 1.21352 1.22081 1.19593 1.21142 0.91675 0.90934 0.93861 0.89667 0.89211 0.90015 0.80630 0.71162 0.80936 0.75773 0.92737 0.90592 0.92313 0.91675 0.90561 0.91202 0.93249 0.93943 0.98387 0.94214 0.92964 0.95758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.92 8.82 71.24 0.63 -1.29 16 2 C 0.03 0.53 5.95 -19.43 -0.12 0.42 16 3 C -0.19 -2.99 9.70 22.42 0.22 -2.77 16 4 C 0.33 6.39 7.74 84.82 0.66 7.05 16 5 O -0.49 -7.50 13.55 -88.00 -1.19 -8.69 16 6 N -0.54 -12.70 10.37 -307.81 -3.19 -15.89 16 7 C 0.17 3.63 10.69 85.04 0.91 4.53 16 8 C -0.22 -4.76 5.89 -19.99 -0.12 -4.88 16 9 C 0.57 14.09 7.68 86.72 0.67 14.75 16 10 O -0.56 -15.86 13.17 -3.97 -0.05 -15.92 16 11 N -0.71 -17.00 4.96 -445.63 -2.21 -19.21 16 12 C 0.16 4.08 2.35 44.99 0.11 4.18 16 13 H 0.09 2.24 7.58 -2.39 -0.02 2.22 16 14 C -0.16 -3.91 8.76 71.98 0.63 -3.28 16 15 C -0.10 -2.95 2.27 -10.72 -0.02 -2.97 16 16 H 0.07 2.10 8.14 -2.39 -0.02 2.09 16 17 C -0.10 -2.81 4.89 30.62 0.15 -2.66 16 18 C -0.13 -4.62 6.08 30.66 0.19 -4.43 16 19 C 0.17 8.14 5.36 86.35 0.46 8.60 16 20 N -0.61 -29.07 2.99 -699.15 -2.09 -31.16 16 21 C -0.26 -14.09 9.54 84.03 0.80 -13.28 16 22 H 0.07 3.45 7.93 -2.91 -0.02 3.43 16 23 C -0.05 -2.49 4.74 84.86 0.40 -2.09 16 24 N -0.93 -54.46 11.58 21.65 0.25 -54.21 16 25 Si 0.95 44.41 29.61 68.60 2.03 46.44 16 26 H -0.29 -13.18 7.11 99.48 0.71 -12.48 16 27 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 28 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 29 C 0.15 5.56 5.26 86.36 0.45 6.01 16 30 H 0.08 1.38 8.14 -2.39 -0.02 1.37 16 31 H 0.09 0.98 8.06 -2.39 -0.02 0.96 16 32 H 0.08 1.73 6.00 -2.39 -0.01 1.71 16 33 H 0.18 1.64 8.06 -2.91 -0.02 1.61 16 34 H 0.43 2.00 9.06 -74.06 -0.67 1.33 16 35 H 0.17 3.29 6.47 -2.91 -0.02 3.27 16 36 H 0.41 9.03 5.38 -92.70 -0.50 8.53 16 37 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 38 H 0.08 1.75 6.59 -2.38 -0.02 1.74 16 39 H 0.06 1.53 6.23 -2.39 -0.01 1.52 16 40 H 0.06 1.86 6.63 -2.39 -0.02 1.84 16 41 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 42 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 43 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 44 H 0.04 2.26 6.22 -2.39 -0.01 2.25 16 45 H 0.00 -0.10 8.14 -2.39 -0.02 -0.12 16 46 H 0.25 14.18 8.31 -92.71 -0.77 13.41 16 47 H 0.05 1.85 6.75 -2.39 -0.02 1.84 16 48 H 0.02 0.93 6.06 -2.39 -0.01 0.92 16 Total: -1.00 -70.15 375.58 -0.61 -70.76 By element: Atomic # 1 Polarization: 20.15 SS G_CDS: -0.16 Total: 19.98 kcal Atomic # 6 Polarization: 1.88 SS G_CDS: 6.01 Total: 7.89 kcal Atomic # 7 Polarization: -113.23 SS G_CDS: -7.24 Total: -120.48 kcal Atomic # 8 Polarization: -23.36 SS G_CDS: -1.24 Total: -24.61 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.44 kcal Total: -70.15 -0.61 -70.76 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025533971.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.549 kcal (2) G-P(sol) polarization free energy of solvation -70.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds