Wall clock time and date at job start Tue Mar 31 2020 17:51:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.37987 * 120.82303 * 2 1 4 4 C 1.39122 * 119.26637 * 180.02562 * 3 2 1 5 5 O 1.35499 * 119.52404 * 179.97438 * 4 3 2 6 6 N 1.32428 * 120.95206 * 0.02562 * 4 3 2 7 7 C 1.31646 * 121.79722 * 359.72037 * 6 4 3 8 8 C 1.39566 * 120.62408 * 0.54545 * 7 6 4 9 9 C 1.47615 * 120.49766 * 179.75130 * 8 7 6 10 10 O 1.21575 * 119.99571 * 174.66267 * 9 8 7 11 11 N 1.34769 * 120.00080 * 354.65467 * 9 8 7 12 12 C 1.46498 * 120.00195 * 180.27486 * 11 9 8 13 13 H 1.09003 * 109.46999 * 34.72896 * 12 11 9 14 14 C 1.52999 * 109.47389 * 274.72870 * 12 11 9 15 15 C 1.53003 * 109.47367 * 154.72685 * 12 11 9 16 16 H 1.09002 * 109.49467 * 60.06667 * 15 12 11 17 17 C 1.53042 * 109.49912 * 180.16561 * 15 12 11 18 18 C 1.53036 * 109.53806 * 181.31749 * 17 15 12 19 19 C 1.53195 * 109.31542 * 298.63579 * 18 17 15 20 20 N 1.46933 * 108.77502 * 54.63195 * 19 18 17 21 21 C 1.36932 * 120.62798 * 126.37071 * 20 19 18 22 22 H 1.08003 * 119.99766 * 205.89675 * 21 20 19 23 23 C 1.38818 * 120.00063 * 25.90189 * 21 20 19 24 24 N 1.31613 * 119.99818 * 16.39619 * 23 21 20 25 25 Si 1.86798 * 119.99979 * 196.39613 * 23 21 20 26 26 H 1.48509 * 109.46910 * 94.40182 * 25 23 21 27 27 H 1.48499 * 109.47260 * 214.40197 * 25 23 21 28 28 H 1.48503 * 109.47280 * 334.40382 * 25 23 21 29 29 C 1.46919 * 118.73878 * 306.39522 * 20 19 18 30 30 H 1.09001 * 109.46574 * 263.18070 * 1 2 3 31 31 H 1.08998 * 109.46830 * 23.17733 * 1 2 3 32 32 H 1.08998 * 109.47240 * 143.18087 * 1 2 3 33 33 H 1.08008 * 120.36694 * 0.04535 * 3 2 1 34 34 H 0.96705 * 114.00365 * 90.00526 * 5 4 3 35 35 H 1.08000 * 119.68542 * 180.26450 * 7 6 4 36 36 H 0.97000 * 120.00552 * 0.02562 * 11 9 8 37 37 H 1.09000 * 109.46624 * 59.99915 * 14 12 11 38 38 H 1.09001 * 109.47117 * 179.97438 * 14 12 11 39 39 H 1.08994 * 109.47369 * 299.99514 * 14 12 11 40 40 H 1.08995 * 109.45670 * 301.33918 * 17 15 12 41 41 H 1.08998 * 109.46063 * 61.29764 * 17 15 12 42 42 H 1.08994 * 109.50089 * 178.68405 * 18 17 15 43 43 H 1.08998 * 109.52681 * 58.59963 * 18 17 15 44 44 H 1.09003 * 109.58533 * 294.84933 * 19 18 17 45 45 H 1.08996 * 109.71054 * 174.48954 * 19 18 17 46 46 H 0.97006 * 119.99734 * 180.02562 * 24 23 21 47 47 H 1.09002 * 109.59307 * 293.82069 * 29 20 19 48 48 H 1.09002 * 109.58981 * 173.39686 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2141 1.1850 0.0000 4 6 3.6048 1.1472 -0.0005 5 8 4.3043 2.3076 -0.0011 6 7 4.2548 -0.0066 -0.0016 7 6 3.6205 -1.1601 0.0034 8 6 2.2255 -1.2044 -0.0016 9 6 1.5171 -2.4995 -0.0015 10 8 0.3053 -2.5294 0.0921 11 7 2.2136 -3.6486 -0.1055 12 6 1.5101 -4.9336 -0.1116 13 1 0.5540 -4.8220 -0.6231 14 6 1.2677 -5.3892 1.3288 15 6 2.3596 -5.9767 -0.8403 16 1 3.3154 -6.0895 -0.3284 17 6 1.6234 -7.3184 -0.8506 18 6 2.4866 -8.3705 -1.5504 19 6 2.7312 -7.9422 -3.0008 20 7 3.3067 -6.5902 -3.0039 21 6 4.4770 -6.3317 -3.6661 22 1 5.1067 -5.5131 -3.3502 23 6 4.8540 -7.1216 -4.7436 24 7 3.9683 -7.8961 -5.3334 25 14 6.6183 -7.0855 -5.3562 26 1 7.3859 -8.1859 -4.7195 27 1 6.6339 -7.2596 -6.8308 28 1 7.2376 -5.7822 -5.0050 29 6 2.6028 -5.5212 -2.2826 30 1 -0.3632 -0.1220 1.0204 31 1 -0.3633 0.9447 -0.4045 32 1 -0.3633 -0.8227 -0.6159 33 1 1.6936 2.1314 0.0007 34 1 4.5078 2.6447 0.8822 35 1 4.1849 -2.0809 0.0067 36 1 3.1804 -3.6247 -0.1800 37 1 0.6624 -4.6460 1.8478 38 1 0.7439 -6.3450 1.3242 39 1 2.2237 -5.5008 1.8403 40 1 1.4274 -7.6328 0.1745 41 1 0.6790 -7.2103 -1.3839 42 1 1.9719 -9.3312 -1.5368 43 1 3.4412 -8.4619 -1.0323 44 1 1.7867 -7.9385 -3.5449 45 1 3.4246 -8.6354 -3.4769 46 1 4.2318 -8.4484 -6.0861 47 1 1.6478 -5.3201 -2.7681 48 1 3.2123 -4.6176 -2.2826 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025533972.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:51:44 Heat of formation + Delta-G solvation = -26.505869 kcal Electronic energy + Delta-G solvation = -29192.875018 eV Core-core repulsion = 25248.416476 eV Total energy + Delta-G solvation = -3944.458542 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.12561 -39.65945 -38.07117 -37.22085 -35.44347 -34.00944 -33.12659 -31.68184 -30.55147 -30.06328 -28.50691 -28.07410 -25.28761 -24.70233 -23.52063 -22.47115 -21.96364 -20.98180 -20.42048 -19.21586 -18.72281 -17.84342 -17.32725 -16.67235 -16.16974 -15.78755 -15.24395 -14.97639 -14.87410 -14.40293 -14.22091 -13.74919 -13.54886 -13.40268 -13.29295 -13.19981 -13.01647 -12.79990 -12.66050 -12.53116 -12.46092 -12.23215 -11.97892 -11.81334 -11.51110 -11.14435 -10.96347 -10.67871 -10.42366 -10.22207 -10.15621 -10.12249 -9.90244 -9.87088 -9.62968 -9.52317 -9.41596 -9.31198 -8.92290 -8.46542 -6.70010 -5.78315 -3.20687 0.28523 0.86403 2.63789 3.09703 3.21947 3.37395 3.44655 3.45786 3.53571 4.21155 4.38013 4.46864 4.49292 4.72329 4.89157 4.95660 5.16918 5.22609 5.33716 5.35606 5.39649 5.46863 5.52481 5.53401 5.57653 5.73004 5.76221 5.78738 5.97609 6.05210 6.06182 6.09774 6.19757 6.29313 6.33325 6.41188 6.51848 6.60347 6.70271 6.78625 6.86537 6.95867 7.08834 7.41800 7.47782 7.52507 7.70164 7.78942 8.15829 8.43912 9.20836 9.84494 10.39705 11.29283 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.011197 B = 0.003337 C = 0.002736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2500.140645 B = 8388.500480 C =10231.549794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.034 3.966 3 C -0.200 4.200 4 C 0.334 3.666 5 O -0.481 6.481 6 N -0.510 5.510 7 C 0.168 3.832 8 C -0.202 4.202 9 C 0.566 3.434 10 O -0.534 6.534 11 N -0.712 5.712 12 C 0.148 3.852 13 H 0.088 0.912 14 C -0.161 4.161 15 C -0.112 4.112 16 H 0.072 0.928 17 C -0.101 4.101 18 C -0.142 4.142 19 C 0.165 3.835 20 N -0.592 5.592 21 C -0.251 4.251 22 H 0.066 0.934 23 C 0.001 3.999 24 N -0.903 5.903 25 Si 0.902 3.098 26 H -0.288 1.288 27 H -0.291 1.291 28 H -0.279 1.279 29 C 0.155 3.845 30 H 0.083 0.917 31 H 0.064 0.936 32 H 0.104 0.896 33 H 0.146 0.854 34 H 0.403 0.597 35 H 0.166 0.834 36 H 0.400 0.600 37 H 0.055 0.945 38 H 0.069 0.931 39 H 0.055 0.945 40 H 0.050 0.950 41 H 0.055 0.945 42 H 0.049 0.951 43 H 0.053 0.947 44 H 0.015 0.985 45 H 0.093 0.907 46 H 0.253 0.747 47 H 0.017 0.983 48 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.278 13.408 15.795 21.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.026 3.974 3 C -0.221 4.221 4 C 0.156 3.844 5 O -0.288 6.288 6 N -0.229 5.229 7 C 0.009 3.991 8 C -0.207 4.207 9 C 0.353 3.647 10 O -0.412 6.412 11 N -0.363 5.363 12 C 0.044 3.956 13 H 0.106 0.894 14 C -0.219 4.219 15 C -0.133 4.133 16 H 0.090 0.910 17 C -0.139 4.139 18 C -0.181 4.181 19 C 0.040 3.960 20 N -0.314 5.314 21 C -0.380 4.380 22 H 0.084 0.916 23 C -0.198 4.198 24 N -0.548 5.548 25 Si 0.732 3.268 26 H -0.215 1.215 27 H -0.218 1.218 28 H -0.204 1.204 29 C 0.028 3.972 30 H 0.101 0.899 31 H 0.082 0.918 32 H 0.122 0.878 33 H 0.164 0.836 34 H 0.262 0.738 35 H 0.183 0.817 36 H 0.235 0.765 37 H 0.074 0.926 38 H 0.088 0.912 39 H 0.074 0.926 40 H 0.069 0.931 41 H 0.074 0.926 42 H 0.067 0.933 43 H 0.072 0.928 44 H 0.033 0.967 45 H 0.111 0.889 46 H 0.063 0.937 47 H 0.035 0.965 48 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -5.232 13.312 15.079 20.784 hybrid contribution 0.757 0.131 0.016 0.768 sum -4.475 13.443 15.096 20.703 Atomic orbital electron populations 1.21125 0.88638 1.03856 1.04276 1.20376 0.97707 0.90596 0.88727 1.21990 0.93706 0.99581 1.06799 1.19379 0.87107 0.85247 0.92626 1.84731 1.75979 1.34081 1.34048 1.67177 1.42020 0.98241 1.15441 1.22779 0.90348 0.95321 0.90621 1.20942 0.95066 0.94733 1.09987 1.17819 0.86968 0.83298 0.76640 1.90721 1.13318 1.87096 1.50080 1.46048 1.10776 1.05831 1.73609 1.21101 0.96774 0.81557 0.96164 0.89358 1.22198 1.01763 1.01652 0.96307 1.21992 0.98256 0.94207 0.98814 0.90957 1.21439 0.98556 0.94523 0.99343 1.22172 0.98657 0.96655 1.00614 1.20887 0.97557 0.87429 0.90163 1.44067 1.24895 1.03519 1.58920 1.19220 0.95784 1.15096 1.07932 0.91600 1.24992 0.97942 1.00805 0.96017 1.70022 1.31912 1.30177 1.22731 0.86270 0.84838 0.77869 0.77792 1.21498 1.21791 1.20401 1.20857 0.95455 0.91734 0.89125 0.89859 0.91753 0.87795 0.83589 0.73823 0.81744 0.76490 0.92624 0.91189 0.92632 0.93118 0.92594 0.93252 0.92797 0.96655 0.88908 0.93656 0.96545 0.93170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.20 8.83 36.01 0.32 -0.88 16 2 C 0.03 0.37 5.95 -103.96 -0.62 -0.25 16 3 C -0.20 -1.90 9.70 -39.35 -0.38 -2.28 16 4 C 0.33 3.61 7.74 -16.97 -0.13 3.48 16 5 O -0.48 -4.31 13.55 -18.19 -0.25 -4.56 16 6 N -0.51 -6.30 10.37 -12.97 -0.13 -6.44 16 7 C 0.17 1.90 10.70 -17.14 -0.18 1.72 16 8 C -0.20 -2.38 5.89 -104.82 -0.62 -3.00 16 9 C 0.57 7.45 7.69 -12.44 -0.10 7.36 16 10 O -0.53 -8.14 13.14 5.30 0.07 -8.07 16 11 N -0.71 -8.81 4.43 -54.82 -0.24 -9.05 16 12 C 0.15 1.99 2.16 -67.93 -0.15 1.84 16 13 H 0.09 1.34 7.57 -51.93 -0.39 0.94 16 14 C -0.16 -1.87 9.14 37.16 0.34 -1.53 16 15 C -0.11 -1.75 1.97 -90.49 -0.18 -1.93 16 16 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 17 C -0.10 -1.58 4.86 -26.69 -0.13 -1.71 16 18 C -0.14 -2.61 6.08 -26.61 -0.16 -2.77 16 19 C 0.17 3.88 5.33 -3.71 -0.02 3.86 16 20 N -0.59 -14.42 3.00 -172.31 -0.52 -14.94 16 21 C -0.25 -6.75 9.62 -15.06 -0.14 -6.89 16 22 H 0.07 1.73 7.87 -52.48 -0.41 1.32 16 23 C 0.00 0.02 4.96 -17.43 -0.09 -0.07 16 24 N -0.90 -26.05 10.98 55.49 0.61 -25.44 16 25 Si 0.90 21.59 29.58 -169.99 -5.03 16.56 16 26 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 27 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 28 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 29 C 0.16 3.10 5.55 -3.71 -0.02 3.07 16 30 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.06 0.49 8.06 -51.93 -0.42 0.07 16 32 H 0.10 1.25 5.96 -51.93 -0.31 0.94 16 33 H 0.15 1.02 8.06 -52.48 -0.42 0.59 16 34 H 0.40 1.41 9.06 45.56 0.41 1.83 16 35 H 0.17 1.51 6.45 -52.49 -0.34 1.17 16 36 H 0.40 4.35 6.50 -40.82 -0.27 4.09 16 37 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.07 0.77 6.41 -51.93 -0.33 0.44 16 39 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.05 0.68 6.36 -51.93 -0.33 0.35 16 41 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 42 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 44 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 45 H 0.09 2.46 5.84 -51.93 -0.30 2.16 16 46 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 47 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 48 H 0.05 0.97 7.43 -51.93 -0.39 0.59 16 LS Contribution 379.70 15.07 5.72 5.72 Total: -1.00 -32.92 379.70 -8.47 -41.39 By element: Atomic # 1 Polarization: 11.24 SS G_CDS: -6.44 Total: 4.80 kcal Atomic # 6 Polarization: 2.28 SS G_CDS: -2.26 Total: 0.02 kcal Atomic # 7 Polarization: -55.58 SS G_CDS: -0.29 Total: -55.87 kcal Atomic # 8 Polarization: -12.45 SS G_CDS: -0.18 Total: -12.63 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.03 Total: 16.56 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -32.92 -8.47 -41.39 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025533972.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.882 kcal (2) G-P(sol) polarization free energy of solvation -32.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds