Wall clock time and date at job start Tue Mar 31 2020 17:51:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.37987 * 120.82303 * 2 1 4 4 C 1.39122 * 119.26637 * 180.02562 * 3 2 1 5 5 O 1.35499 * 119.52404 * 179.97438 * 4 3 2 6 6 N 1.32428 * 120.95206 * 0.02562 * 4 3 2 7 7 C 1.31646 * 121.79722 * 359.72037 * 6 4 3 8 8 C 1.39566 * 120.62408 * 0.54545 * 7 6 4 9 9 C 1.47615 * 120.49766 * 179.75130 * 8 7 6 10 10 O 1.21575 * 119.99571 * 174.66267 * 9 8 7 11 11 N 1.34769 * 120.00080 * 354.65467 * 9 8 7 12 12 C 1.46498 * 120.00195 * 180.27486 * 11 9 8 13 13 H 1.09003 * 109.46999 * 34.72896 * 12 11 9 14 14 C 1.52999 * 109.47389 * 274.72870 * 12 11 9 15 15 C 1.53003 * 109.47367 * 154.72685 * 12 11 9 16 16 H 1.09002 * 109.49467 * 60.06667 * 15 12 11 17 17 C 1.53042 * 109.49912 * 180.16561 * 15 12 11 18 18 C 1.53036 * 109.53806 * 181.31749 * 17 15 12 19 19 C 1.53195 * 109.31542 * 298.63579 * 18 17 15 20 20 N 1.46933 * 108.77502 * 54.63195 * 19 18 17 21 21 C 1.36932 * 120.62798 * 126.37071 * 20 19 18 22 22 H 1.08003 * 119.99766 * 205.89675 * 21 20 19 23 23 C 1.38818 * 120.00063 * 25.90189 * 21 20 19 24 24 N 1.31613 * 119.99818 * 16.39619 * 23 21 20 25 25 Si 1.86798 * 119.99979 * 196.39613 * 23 21 20 26 26 H 1.48509 * 109.46910 * 94.40182 * 25 23 21 27 27 H 1.48499 * 109.47260 * 214.40197 * 25 23 21 28 28 H 1.48503 * 109.47280 * 334.40382 * 25 23 21 29 29 C 1.46919 * 118.73878 * 306.39522 * 20 19 18 30 30 H 1.09001 * 109.46574 * 263.18070 * 1 2 3 31 31 H 1.08998 * 109.46830 * 23.17733 * 1 2 3 32 32 H 1.08998 * 109.47240 * 143.18087 * 1 2 3 33 33 H 1.08008 * 120.36694 * 0.04535 * 3 2 1 34 34 H 0.96705 * 114.00365 * 90.00526 * 5 4 3 35 35 H 1.08000 * 119.68542 * 180.26450 * 7 6 4 36 36 H 0.97000 * 120.00552 * 0.02562 * 11 9 8 37 37 H 1.09000 * 109.46624 * 59.99915 * 14 12 11 38 38 H 1.09001 * 109.47117 * 179.97438 * 14 12 11 39 39 H 1.08994 * 109.47369 * 299.99514 * 14 12 11 40 40 H 1.08995 * 109.45670 * 301.33918 * 17 15 12 41 41 H 1.08998 * 109.46063 * 61.29764 * 17 15 12 42 42 H 1.08994 * 109.50089 * 178.68405 * 18 17 15 43 43 H 1.08998 * 109.52681 * 58.59963 * 18 17 15 44 44 H 1.09003 * 109.58533 * 294.84933 * 19 18 17 45 45 H 1.08996 * 109.71054 * 174.48954 * 19 18 17 46 46 H 0.97006 * 119.99734 * 180.02562 * 24 23 21 47 47 H 1.09002 * 109.59307 * 293.82069 * 29 20 19 48 48 H 1.09002 * 109.58981 * 173.39686 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2141 1.1850 0.0000 4 6 3.6048 1.1472 -0.0005 5 8 4.3043 2.3076 -0.0011 6 7 4.2548 -0.0066 -0.0016 7 6 3.6205 -1.1601 0.0034 8 6 2.2255 -1.2044 -0.0016 9 6 1.5171 -2.4995 -0.0015 10 8 0.3053 -2.5294 0.0921 11 7 2.2136 -3.6486 -0.1055 12 6 1.5101 -4.9336 -0.1116 13 1 0.5540 -4.8220 -0.6231 14 6 1.2677 -5.3892 1.3288 15 6 2.3596 -5.9767 -0.8403 16 1 3.3154 -6.0895 -0.3284 17 6 1.6234 -7.3184 -0.8506 18 6 2.4866 -8.3705 -1.5504 19 6 2.7312 -7.9422 -3.0008 20 7 3.3067 -6.5902 -3.0039 21 6 4.4770 -6.3317 -3.6661 22 1 5.1067 -5.5131 -3.3502 23 6 4.8540 -7.1216 -4.7436 24 7 3.9683 -7.8961 -5.3334 25 14 6.6183 -7.0855 -5.3562 26 1 7.3859 -8.1859 -4.7195 27 1 6.6339 -7.2596 -6.8308 28 1 7.2376 -5.7822 -5.0050 29 6 2.6028 -5.5212 -2.2826 30 1 -0.3632 -0.1220 1.0204 31 1 -0.3633 0.9447 -0.4045 32 1 -0.3633 -0.8227 -0.6159 33 1 1.6936 2.1314 0.0007 34 1 4.5078 2.6447 0.8822 35 1 4.1849 -2.0809 0.0067 36 1 3.1804 -3.6247 -0.1800 37 1 0.6624 -4.6460 1.8478 38 1 0.7439 -6.3450 1.3242 39 1 2.2237 -5.5008 1.8403 40 1 1.4274 -7.6328 0.1745 41 1 0.6790 -7.2103 -1.3839 42 1 1.9719 -9.3312 -1.5368 43 1 3.4412 -8.4619 -1.0323 44 1 1.7867 -7.9385 -3.5449 45 1 3.4246 -8.6354 -3.4769 46 1 4.2318 -8.4484 -6.0861 47 1 1.6478 -5.3201 -2.7681 48 1 3.2123 -4.6176 -2.2826 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025533972.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:51:43 Heat of formation + Delta-G solvation = -50.791671 kcal Electronic energy + Delta-G solvation = -29193.928129 eV Core-core repulsion = 25248.416476 eV Total energy + Delta-G solvation = -3945.511653 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.99358 -40.67988 -39.41366 -38.04163 -36.79590 -35.01833 -34.55176 -32.96552 -32.28444 -31.13223 -29.80753 -28.89108 -27.13289 -25.67716 -24.72556 -23.61105 -23.38089 -22.21916 -21.54751 -20.70708 -19.46441 -18.89995 -18.61858 -18.10539 -17.04154 -16.84145 -16.76304 -16.15499 -15.98214 -15.76649 -15.44781 -15.16495 -14.95344 -14.64811 -14.46376 -14.13011 -14.09527 -13.98091 -13.82927 -13.66289 -13.53415 -13.31043 -13.21664 -13.01070 -12.77314 -12.72618 -12.51703 -12.26175 -12.18388 -11.93037 -11.74498 -11.48187 -11.25256 -11.11011 -10.95102 -10.69784 -10.51980 -10.42996 -10.19705 -9.92822 -8.68934 -7.85318 -5.30499 -0.54265 0.06499 1.46949 1.47960 1.56880 1.72009 2.10810 2.48197 2.51183 2.68545 3.28312 3.42829 3.57418 3.58359 3.64579 3.90740 3.96150 4.03851 4.08708 4.18439 4.38268 4.42275 4.48095 4.53289 4.62216 4.66685 4.67152 4.77267 4.79936 4.88114 4.90659 4.97410 5.03774 5.08470 5.13144 5.24322 5.29982 5.31310 5.36336 5.43942 5.50794 5.56810 5.60713 5.69558 5.82894 6.39315 6.48674 6.52891 6.76475 7.15717 7.16189 7.87874 8.38095 9.20033 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.011197 B = 0.003337 C = 0.002736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2500.140645 B = 8388.500480 C =10231.549794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.027 3.973 3 C -0.191 4.191 4 C 0.332 3.668 5 O -0.488 6.488 6 N -0.536 5.536 7 C 0.167 3.833 8 C -0.216 4.216 9 C 0.566 3.434 10 O -0.558 6.558 11 N -0.709 5.709 12 C 0.157 3.843 13 H 0.070 0.930 14 C -0.152 4.152 15 C -0.095 4.095 16 H 0.080 0.920 17 C -0.097 4.097 18 C -0.130 4.130 19 C 0.169 3.831 20 N -0.609 5.609 21 C -0.258 4.258 22 H 0.070 0.930 23 C -0.054 4.054 24 N -0.937 5.937 25 Si 0.965 3.035 26 H -0.285 1.285 27 H -0.298 1.298 28 H -0.268 1.268 29 C 0.154 3.846 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.079 0.921 33 H 0.175 0.825 34 H 0.426 0.574 35 H 0.179 0.821 36 H 0.407 0.593 37 H 0.051 0.949 38 H 0.080 0.920 39 H 0.068 0.932 40 H 0.088 0.912 41 H 0.050 0.950 42 H 0.068 0.932 43 H 0.054 0.946 44 H -0.012 1.012 45 H 0.058 0.942 46 H 0.248 0.752 47 H -0.003 1.003 48 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.849 14.696 17.998 23.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.018 3.982 3 C -0.212 4.212 4 C 0.154 3.846 5 O -0.299 6.299 6 N -0.256 5.256 7 C 0.008 3.992 8 C -0.222 4.222 9 C 0.354 3.646 10 O -0.438 6.438 11 N -0.360 5.360 12 C 0.053 3.947 13 H 0.088 0.912 14 C -0.210 4.210 15 C -0.116 4.116 16 H 0.098 0.902 17 C -0.135 4.135 18 C -0.169 4.169 19 C 0.043 3.957 20 N -0.332 5.332 21 C -0.388 4.388 22 H 0.088 0.912 23 C -0.248 4.248 24 N -0.584 5.584 25 Si 0.794 3.206 26 H -0.212 1.212 27 H -0.225 1.225 28 H -0.192 1.192 29 C 0.029 3.971 30 H 0.105 0.895 31 H 0.106 0.894 32 H 0.097 0.903 33 H 0.192 0.808 34 H 0.288 0.712 35 H 0.196 0.804 36 H 0.244 0.756 37 H 0.070 0.930 38 H 0.099 0.901 39 H 0.087 0.913 40 H 0.107 0.893 41 H 0.069 0.931 42 H 0.087 0.913 43 H 0.073 0.927 44 H 0.006 0.994 45 H 0.076 0.924 46 H 0.058 0.942 47 H 0.015 0.985 48 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -4.790 14.630 17.332 23.181 hybrid contribution 0.603 -0.158 -0.692 0.931 sum -4.187 14.472 16.640 22.447 Atomic orbital electron populations 1.21065 0.88053 1.04099 1.04144 1.20603 0.98262 0.90781 0.88508 1.22193 0.93226 1.00224 1.05569 1.19607 0.87763 0.85326 0.91880 1.84680 1.75797 1.33271 1.36179 1.67206 1.42804 0.98966 1.16613 1.22966 0.90259 0.95751 0.90199 1.20894 0.95363 0.94403 1.11526 1.18023 0.86713 0.83824 0.76044 1.90714 1.14348 1.87477 1.51299 1.45995 1.11162 1.05441 1.73404 1.20912 0.95349 0.81350 0.97138 0.91211 1.22123 1.02569 1.01931 0.94425 1.21764 0.99141 0.94906 0.95750 0.90202 1.21437 0.97516 0.93495 1.01031 1.21998 0.99601 0.98393 0.96915 1.20725 0.95076 0.86754 0.93150 1.44336 1.24821 1.04838 1.59227 1.19583 0.96740 1.14767 1.07720 0.91196 1.25737 1.01425 1.01070 0.96607 1.70191 1.33630 1.31293 1.23303 0.85275 0.80570 0.78188 0.76584 1.21151 1.22515 1.19248 1.20973 0.93975 0.90966 0.91217 0.89466 0.89382 0.90265 0.80779 0.71153 0.80400 0.75583 0.92985 0.90096 0.91273 0.89328 0.93130 0.91347 0.92693 0.99407 0.92391 0.94243 0.98471 0.92968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.15 8.83 71.24 0.63 -1.52 16 2 C 0.03 0.54 5.95 -19.43 -0.12 0.42 16 3 C -0.19 -3.22 9.70 22.42 0.22 -3.00 16 4 C 0.33 6.56 7.74 84.82 0.66 7.22 16 5 O -0.49 -7.69 13.55 -88.01 -1.19 -8.88 16 6 N -0.54 -12.59 10.37 -307.81 -3.19 -15.78 16 7 C 0.17 3.61 10.70 85.04 0.91 4.52 16 8 C -0.22 -4.93 5.89 -19.99 -0.12 -5.05 16 9 C 0.57 14.61 7.69 86.72 0.67 15.27 16 10 O -0.56 -16.94 13.14 -3.95 -0.05 -16.99 16 11 N -0.71 -16.79 4.43 -445.64 -1.97 -18.76 16 12 C 0.16 3.98 2.16 44.99 0.10 4.08 16 13 H 0.07 2.07 7.57 -2.39 -0.02 2.05 16 14 C -0.15 -3.11 9.14 71.98 0.66 -2.45 16 15 C -0.10 -2.83 1.97 -10.71 -0.02 -2.85 16 16 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 17 C -0.10 -2.84 4.86 30.62 0.15 -2.69 16 18 C -0.13 -4.64 6.08 30.67 0.19 -4.45 16 19 C 0.17 8.12 5.33 86.36 0.46 8.58 16 20 N -0.61 -30.17 3.00 -699.07 -2.10 -32.27 16 21 C -0.26 -14.04 9.62 84.04 0.81 -13.23 16 22 H 0.07 3.67 7.87 -2.91 -0.02 3.65 16 23 C -0.05 -2.99 4.96 84.86 0.42 -2.57 16 24 N -0.94 -55.89 10.98 21.65 0.24 -55.65 16 25 Si 0.97 44.97 29.58 68.60 2.03 47.00 16 26 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 27 H -0.30 -14.11 7.11 99.48 0.71 -13.41 16 28 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 29 C 0.15 6.18 5.55 86.37 0.48 6.66 16 30 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.09 1.15 8.06 -2.39 -0.02 1.13 16 32 H 0.08 1.90 5.96 -2.39 -0.01 1.88 16 33 H 0.17 1.85 8.06 -2.91 -0.02 1.82 16 34 H 0.43 1.97 9.06 -74.05 -0.67 1.30 16 35 H 0.18 3.08 6.45 -2.91 -0.02 3.07 16 36 H 0.41 8.33 6.50 -92.71 -0.60 7.73 16 37 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.08 1.48 6.41 -2.39 -0.02 1.47 16 39 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 40 H 0.09 2.01 6.36 -2.39 -0.02 2.00 16 41 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 42 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 43 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 44 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 45 H 0.06 3.19 5.84 -2.39 -0.01 3.18 16 46 H 0.25 14.38 8.31 -92.70 -0.77 13.61 16 47 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 48 H 0.05 2.02 7.43 -2.39 -0.02 2.01 16 Total: -1.00 -72.98 379.70 -0.43 -73.41 By element: Atomic # 1 Polarization: 19.27 SS G_CDS: -0.28 Total: 18.99 kcal Atomic # 6 Polarization: 2.85 SS G_CDS: 6.08 Total: 8.93 kcal Atomic # 7 Polarization: -115.43 SS G_CDS: -7.03 Total: -122.46 kcal Atomic # 8 Polarization: -24.63 SS G_CDS: -1.24 Total: -25.87 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 47.00 kcal Total: -72.98 -0.43 -73.41 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025533972.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.622 kcal (2) G-P(sol) polarization free energy of solvation -72.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds