Wall clock time and date at job start Tue Mar 31 2020 17:51:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37994 * 120.82655 * 2 1 4 4 C 1.39126 * 119.26636 * 180.26938 * 3 2 1 5 5 O 1.35501 * 119.52316 * 179.69747 * 4 3 2 6 6 N 1.32431 * 120.95012 * 359.72439 * 4 3 2 7 7 C 1.31639 * 121.80017 * 359.97438 * 6 4 3 8 8 C 1.39565 * 120.62396 * 0.02562 * 7 6 4 9 9 C 1.47623 * 120.49437 * 180.02562 * 8 7 6 10 10 O 1.21584 * 119.99644 * 174.02247 * 9 8 7 11 11 N 1.34772 * 120.00014 * 354.01747 * 9 8 7 12 12 C 1.46500 * 119.99718 * 180.02562 * 11 9 8 13 13 H 1.09004 * 109.47232 * 325.00360 * 12 11 9 14 14 C 1.53003 * 109.47001 * 85.00240 * 12 11 9 15 15 C 1.53000 * 109.47519 * 205.00121 * 12 11 9 16 16 H 1.08997 * 109.49511 * 299.93965 * 15 12 11 17 17 C 1.53039 * 109.52979 * 179.85606 * 15 12 11 18 18 C 1.53032 * 109.54104 * 178.66602 * 17 15 12 19 19 C 1.52770 * 109.38053 * 61.24069 * 18 17 15 20 20 N 1.46923 * 109.00714 * 305.58624 * 19 18 17 21 21 C 1.36936 * 120.63289 * 233.58580 * 20 19 18 22 22 H 1.08001 * 120.00224 * 147.88877 * 21 20 19 23 23 C 1.38817 * 119.99988 * 327.89038 * 21 20 19 24 24 N 1.31624 * 119.99871 * 334.43647 * 23 21 20 25 25 Si 1.86801 * 120.00351 * 154.15639 * 23 21 20 26 26 H 1.48494 * 109.46687 * 90.00111 * 25 23 21 27 27 H 1.48495 * 109.47343 * 210.00553 * 25 23 21 28 28 H 1.48501 * 109.46942 * 330.00503 * 25 23 21 29 29 C 1.46924 * 118.73922 * 53.30979 * 20 19 18 30 30 H 1.08994 * 109.47305 * 265.43305 * 1 2 3 31 31 H 1.08998 * 109.46746 * 25.42731 * 1 2 3 32 32 H 1.09005 * 109.47149 * 145.42607 * 1 2 3 33 33 H 1.08001 * 120.36579 * 359.97090 * 3 2 1 34 34 H 0.96704 * 114.00118 * 270.02059 * 5 4 3 35 35 H 1.08004 * 119.68868 * 179.97438 * 7 6 4 36 36 H 0.96994 * 120.00651 * 0.02562 * 11 9 8 37 37 H 1.09005 * 109.47016 * 299.99593 * 14 12 11 38 38 H 1.08990 * 109.47209 * 59.99962 * 14 12 11 39 39 H 1.08998 * 109.47035 * 179.97438 * 14 12 11 40 40 H 1.08997 * 109.45790 * 298.69064 * 17 15 12 41 41 H 1.08998 * 109.45683 * 58.64405 * 17 15 12 42 42 H 1.08996 * 109.50319 * 181.31398 * 18 17 15 43 43 H 1.08999 * 109.49831 * 301.38159 * 18 17 15 44 44 H 1.09002 * 109.50444 * 185.70776 * 19 18 17 45 45 H 1.08995 * 109.43379 * 65.42347 * 19 18 17 46 46 H 0.97005 * 119.99692 * 353.89386 * 24 23 21 47 47 H 1.09001 * 109.58570 * 66.43332 * 29 20 19 48 48 H 1.09000 * 109.58663 * 186.85221 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2141 1.1850 0.0000 4 6 3.6049 1.1471 -0.0057 5 8 4.3044 2.3076 -0.0120 6 7 4.2548 -0.0067 -0.0056 7 6 3.6204 -1.1602 0.0003 8 6 2.2255 -1.2044 0.0062 9 6 1.5171 -2.4995 0.0134 10 8 0.3070 -2.5298 0.1282 11 7 2.2115 -3.6482 -0.1074 12 6 1.5084 -4.9334 -0.1008 13 1 0.6559 -4.8777 0.5762 14 6 1.0172 -5.2532 -1.5141 15 6 2.4617 -6.0340 0.3690 16 1 3.3137 -6.0908 -0.3083 17 6 1.7273 -7.3766 0.3798 18 6 2.6896 -8.4829 0.8178 19 6 3.1865 -8.1918 2.2328 20 7 3.7629 -6.8408 2.2691 21 6 5.0321 -6.6362 2.7407 22 1 5.6398 -5.8439 2.3293 23 6 5.5376 -7.4472 3.7476 24 7 4.7170 -8.0453 4.5850 25 14 7.3819 -7.6959 3.9091 26 1 7.9449 -6.6550 4.8061 27 1 7.6521 -9.0400 4.4797 28 1 8.0148 -7.5903 2.5699 29 6 2.9539 -5.7144 1.7841 30 1 -0.3633 -0.0818 1.0243 31 1 -0.3633 0.9281 -0.4412 32 1 -0.3634 -0.8462 -0.5832 33 1 1.6937 2.1313 -0.0005 34 1 4.5035 2.6421 -0.8972 35 1 4.1848 -2.0811 -0.0003 36 1 3.1769 -3.6240 -0.1986 37 1 0.3379 -4.4691 -1.8488 38 1 1.8696 -5.3089 -2.1910 39 1 0.4944 -6.2096 -1.5093 40 1 0.8900 -7.3270 1.0759 41 1 1.3547 -7.5947 -0.6210 42 1 2.1724 -9.4422 0.8028 43 1 3.5393 -8.5171 0.1359 44 1 3.9479 -8.9214 2.5086 45 1 2.3508 -8.2513 2.9300 46 1 3.7671 -7.8508 4.5555 47 1 2.0988 -5.5677 2.4440 48 1 3.5618 -4.8099 1.7639 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025533973.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:51:48 Heat of formation + Delta-G solvation = -31.881683 kcal Electronic energy + Delta-G solvation = -29230.271050 eV Core-core repulsion = 25285.579396 eV Total energy + Delta-G solvation = -3944.691655 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.15027 -39.70495 -38.19257 -37.25738 -35.58492 -34.05725 -33.26772 -31.75636 -30.49395 -30.14715 -28.53727 -28.09012 -25.20037 -24.65993 -23.50747 -22.50628 -22.11662 -21.00159 -20.47582 -19.27544 -18.74136 -17.89572 -17.45570 -17.14741 -16.16344 -15.80885 -15.38578 -14.98548 -14.72522 -14.34475 -14.15747 -13.80052 -13.65777 -13.59429 -13.39250 -13.27236 -13.10075 -12.88812 -12.83006 -12.65740 -12.51021 -12.31718 -11.99154 -11.89060 -11.62186 -11.14857 -10.98839 -10.67865 -10.36412 -10.26015 -10.17487 -10.06960 -9.92588 -9.89253 -9.82153 -9.51336 -9.35698 -9.27444 -8.98777 -8.34367 -6.86120 -6.07404 -3.27988 0.26503 0.84514 2.61208 3.05220 3.20458 3.49478 3.50735 3.52968 3.68240 4.19691 4.35716 4.46303 4.56078 4.69849 4.84897 4.90475 5.14646 5.16200 5.28283 5.29080 5.31762 5.44352 5.45085 5.47331 5.50768 5.64380 5.68365 5.72765 5.89101 5.94332 6.01056 6.03924 6.13339 6.18080 6.21652 6.29860 6.43780 6.47124 6.52326 6.67808 6.70341 6.81777 7.07433 7.07648 7.18907 7.43725 7.50956 8.03033 8.11900 8.58313 9.11829 9.83415 10.30620 11.19427 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.011373 B = 0.003331 C = 0.002726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2461.336046 B = 8404.928987 C =10268.025020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.034 3.966 3 C -0.200 4.200 4 C 0.335 3.665 5 O -0.481 6.481 6 N -0.509 5.509 7 C 0.169 3.831 8 C -0.203 4.203 9 C 0.566 3.434 10 O -0.533 6.533 11 N -0.712 5.712 12 C 0.149 3.851 13 H 0.088 0.912 14 C -0.161 4.161 15 C -0.112 4.112 16 H 0.073 0.927 17 C -0.101 4.101 18 C -0.137 4.137 19 C 0.152 3.848 20 N -0.597 5.597 21 C -0.355 4.355 22 H 0.052 0.948 23 C -0.019 4.019 24 N -0.911 5.911 25 Si 1.063 2.937 26 H -0.294 1.294 27 H -0.286 1.286 28 H -0.292 1.292 29 C 0.157 3.843 30 H 0.085 0.915 31 H 0.063 0.937 32 H 0.103 0.897 33 H 0.146 0.854 34 H 0.404 0.596 35 H 0.166 0.834 36 H 0.400 0.600 37 H 0.055 0.945 38 H 0.055 0.945 39 H 0.069 0.931 40 H 0.056 0.944 41 H 0.054 0.946 42 H 0.052 0.948 43 H 0.057 0.943 44 H 0.072 0.928 45 H 0.015 0.985 46 H 0.269 0.731 47 H 0.015 0.985 48 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.485 14.288 -14.795 21.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.026 3.974 3 C -0.221 4.221 4 C 0.157 3.843 5 O -0.288 6.288 6 N -0.228 5.228 7 C 0.010 3.990 8 C -0.208 4.208 9 C 0.353 3.647 10 O -0.412 6.412 11 N -0.363 5.363 12 C 0.044 3.956 13 H 0.106 0.894 14 C -0.219 4.219 15 C -0.133 4.133 16 H 0.091 0.909 17 C -0.139 4.139 18 C -0.176 4.176 19 C 0.026 3.974 20 N -0.320 5.320 21 C -0.484 4.484 22 H 0.070 0.930 23 C -0.222 4.222 24 N -0.550 5.550 25 Si 0.893 3.107 26 H -0.221 1.221 27 H -0.212 1.212 28 H -0.218 1.218 29 C 0.030 3.970 30 H 0.103 0.897 31 H 0.082 0.918 32 H 0.121 0.879 33 H 0.164 0.836 34 H 0.262 0.738 35 H 0.183 0.817 36 H 0.235 0.765 37 H 0.074 0.926 38 H 0.074 0.926 39 H 0.088 0.912 40 H 0.075 0.925 41 H 0.072 0.928 42 H 0.070 0.930 43 H 0.076 0.924 44 H 0.091 0.909 45 H 0.033 0.967 46 H 0.080 0.920 47 H 0.033 0.967 48 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -6.263 13.461 -13.252 19.900 hybrid contribution -1.314 1.071 -1.283 2.126 sum -7.577 14.532 -14.534 21.905 Atomic orbital electron populations 1.21140 0.88670 1.03836 1.04378 1.20369 0.97685 0.90596 0.88773 1.21982 0.93701 0.99569 1.06865 1.19387 0.87089 0.85256 0.92571 1.84729 1.76014 1.34088 1.34000 1.67185 1.41991 0.98226 1.15406 1.22799 0.90340 0.95364 0.90484 1.20932 0.95074 0.94690 1.10127 1.17832 0.86946 0.83326 0.76575 1.90718 1.13451 1.87044 1.49981 1.46039 1.10967 1.05810 1.73486 1.21083 0.95730 0.81530 0.97228 0.89372 1.22201 1.01275 1.01976 0.96477 1.21975 0.97332 0.93624 1.00336 0.90891 1.21431 0.97981 0.94301 1.00158 1.21987 0.98432 0.96642 1.00515 1.20828 0.96598 0.88136 0.91854 1.44057 1.14043 1.00227 1.73677 1.19887 0.89647 1.21313 1.17520 0.92991 1.25884 1.06271 0.98580 0.91494 1.70745 1.05854 1.45614 1.32746 0.83578 0.75150 0.76586 0.75394 1.22110 1.21179 1.21826 1.20875 0.93952 0.91565 0.90594 0.89682 0.91778 0.87874 0.83575 0.73788 0.81708 0.76467 0.92552 0.92605 0.91201 0.92547 0.92789 0.92977 0.92396 0.90927 0.96667 0.92018 0.96743 0.92960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.20 8.89 36.01 0.32 -0.88 16 2 C 0.03 0.37 5.95 -103.96 -0.62 -0.25 16 3 C -0.20 -1.90 9.71 -39.34 -0.38 -2.28 16 4 C 0.33 3.64 7.74 -16.96 -0.13 3.51 16 5 O -0.48 -4.33 13.55 -18.19 -0.25 -4.58 16 6 N -0.51 -6.40 10.37 -12.96 -0.13 -6.54 16 7 C 0.17 1.96 10.69 -17.14 -0.18 1.78 16 8 C -0.20 -2.42 5.89 -104.82 -0.62 -3.03 16 9 C 0.57 7.52 7.68 -12.43 -0.10 7.42 16 10 O -0.53 -8.18 13.13 5.29 0.07 -8.11 16 11 N -0.71 -8.89 4.43 -54.82 -0.24 -9.13 16 12 C 0.15 1.99 2.16 -67.93 -0.15 1.85 16 13 H 0.09 1.34 7.58 -51.93 -0.39 0.94 16 14 C -0.16 -1.85 9.14 37.16 0.34 -1.51 16 15 C -0.11 -1.75 1.97 -90.50 -0.18 -1.93 16 16 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 17 C -0.10 -1.55 4.86 -26.69 -0.13 -1.68 16 18 C -0.14 -2.44 6.07 -26.83 -0.16 -2.60 16 19 C 0.15 3.46 4.76 -3.93 -0.02 3.44 16 20 N -0.60 -14.48 2.79 -172.58 -0.48 -14.97 16 21 C -0.35 -9.69 9.43 -15.06 -0.14 -9.83 16 22 H 0.05 1.42 7.95 -52.49 -0.42 1.01 16 23 C -0.02 -0.54 4.64 -17.43 -0.08 -0.62 16 24 N -0.91 -27.15 12.60 55.49 0.70 -26.45 16 25 Si 1.06 25.03 29.99 -169.99 -5.10 19.93 16 26 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 27 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 28 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 29 C 0.16 3.14 5.56 -3.71 -0.02 3.12 16 30 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.06 0.45 8.07 -51.93 -0.42 0.03 16 32 H 0.10 1.16 5.85 -51.93 -0.30 0.86 16 33 H 0.15 1.01 8.06 -52.49 -0.42 0.59 16 34 H 0.40 1.43 9.06 45.56 0.41 1.84 16 35 H 0.17 1.62 6.45 -52.48 -0.34 1.28 16 36 H 0.40 4.43 6.50 -40.82 -0.27 4.16 16 37 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.07 0.76 6.41 -51.93 -0.33 0.42 16 40 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 41 H 0.05 0.70 6.37 -51.93 -0.33 0.37 16 42 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 44 H 0.07 1.86 6.65 -51.93 -0.35 1.51 16 45 H 0.02 0.36 7.91 -51.93 -0.41 -0.05 16 46 H 0.27 8.13 7.01 -40.82 -0.29 7.85 16 47 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 48 H 0.05 1.04 7.44 -51.93 -0.39 0.65 16 LS Contribution 379.72 15.07 5.72 5.72 Total: -1.00 -33.67 379.72 -8.38 -42.05 By element: Atomic # 1 Polarization: 11.99 SS G_CDS: -6.42 Total: 5.57 kcal Atomic # 6 Polarization: -1.26 SS G_CDS: -2.25 Total: -3.50 kcal Atomic # 7 Polarization: -56.92 SS G_CDS: -0.16 Total: -57.08 kcal Atomic # 8 Polarization: -12.51 SS G_CDS: -0.18 Total: -12.69 kcal Atomic # 14 Polarization: 25.03 SS G_CDS: -5.10 Total: 19.93 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -33.67 -8.38 -42.05 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025533973.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.164 kcal (2) G-P(sol) polarization free energy of solvation -33.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds