Wall clock time and date at job start Tue Mar 31 2020 17:51:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37994 * 120.82655 * 2 1 4 4 C 1.39126 * 119.26636 * 180.26938 * 3 2 1 5 5 O 1.35501 * 119.52316 * 179.69747 * 4 3 2 6 6 N 1.32431 * 120.95012 * 359.72439 * 4 3 2 7 7 C 1.31639 * 121.80017 * 359.97438 * 6 4 3 8 8 C 1.39565 * 120.62396 * 0.02562 * 7 6 4 9 9 C 1.47623 * 120.49437 * 180.02562 * 8 7 6 10 10 O 1.21584 * 119.99644 * 174.02247 * 9 8 7 11 11 N 1.34772 * 120.00014 * 354.01747 * 9 8 7 12 12 C 1.46500 * 119.99718 * 180.02562 * 11 9 8 13 13 H 1.09004 * 109.47232 * 325.00360 * 12 11 9 14 14 C 1.53003 * 109.47001 * 85.00240 * 12 11 9 15 15 C 1.53000 * 109.47519 * 205.00121 * 12 11 9 16 16 H 1.08997 * 109.49511 * 299.93965 * 15 12 11 17 17 C 1.53039 * 109.52979 * 179.85606 * 15 12 11 18 18 C 1.53032 * 109.54104 * 178.66602 * 17 15 12 19 19 C 1.52770 * 109.38053 * 61.24069 * 18 17 15 20 20 N 1.46923 * 109.00714 * 305.58624 * 19 18 17 21 21 C 1.36936 * 120.63289 * 233.58580 * 20 19 18 22 22 H 1.08001 * 120.00224 * 147.88877 * 21 20 19 23 23 C 1.38817 * 119.99988 * 327.89038 * 21 20 19 24 24 N 1.31624 * 119.99871 * 334.43647 * 23 21 20 25 25 Si 1.86801 * 120.00351 * 154.15639 * 23 21 20 26 26 H 1.48494 * 109.46687 * 90.00111 * 25 23 21 27 27 H 1.48495 * 109.47343 * 210.00553 * 25 23 21 28 28 H 1.48501 * 109.46942 * 330.00503 * 25 23 21 29 29 C 1.46924 * 118.73922 * 53.30979 * 20 19 18 30 30 H 1.08994 * 109.47305 * 265.43305 * 1 2 3 31 31 H 1.08998 * 109.46746 * 25.42731 * 1 2 3 32 32 H 1.09005 * 109.47149 * 145.42607 * 1 2 3 33 33 H 1.08001 * 120.36579 * 359.97090 * 3 2 1 34 34 H 0.96704 * 114.00118 * 270.02059 * 5 4 3 35 35 H 1.08004 * 119.68868 * 179.97438 * 7 6 4 36 36 H 0.96994 * 120.00651 * 0.02562 * 11 9 8 37 37 H 1.09005 * 109.47016 * 299.99593 * 14 12 11 38 38 H 1.08990 * 109.47209 * 59.99962 * 14 12 11 39 39 H 1.08998 * 109.47035 * 179.97438 * 14 12 11 40 40 H 1.08997 * 109.45790 * 298.69064 * 17 15 12 41 41 H 1.08998 * 109.45683 * 58.64405 * 17 15 12 42 42 H 1.08996 * 109.50319 * 181.31398 * 18 17 15 43 43 H 1.08999 * 109.49831 * 301.38159 * 18 17 15 44 44 H 1.09002 * 109.50444 * 185.70776 * 19 18 17 45 45 H 1.08995 * 109.43379 * 65.42347 * 19 18 17 46 46 H 0.97005 * 119.99692 * 353.89386 * 24 23 21 47 47 H 1.09001 * 109.58570 * 66.43332 * 29 20 19 48 48 H 1.09000 * 109.58663 * 186.85221 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2141 1.1850 0.0000 4 6 3.6049 1.1471 -0.0057 5 8 4.3044 2.3076 -0.0120 6 7 4.2548 -0.0067 -0.0056 7 6 3.6204 -1.1602 0.0003 8 6 2.2255 -1.2044 0.0062 9 6 1.5171 -2.4995 0.0134 10 8 0.3070 -2.5298 0.1282 11 7 2.2115 -3.6482 -0.1074 12 6 1.5084 -4.9334 -0.1008 13 1 0.6559 -4.8777 0.5762 14 6 1.0172 -5.2532 -1.5141 15 6 2.4617 -6.0340 0.3690 16 1 3.3137 -6.0908 -0.3083 17 6 1.7273 -7.3766 0.3798 18 6 2.6896 -8.4829 0.8178 19 6 3.1865 -8.1918 2.2328 20 7 3.7629 -6.8408 2.2691 21 6 5.0321 -6.6362 2.7407 22 1 5.6398 -5.8439 2.3293 23 6 5.5376 -7.4472 3.7476 24 7 4.7170 -8.0453 4.5850 25 14 7.3819 -7.6959 3.9091 26 1 7.9449 -6.6550 4.8061 27 1 7.6521 -9.0400 4.4797 28 1 8.0148 -7.5903 2.5699 29 6 2.9539 -5.7144 1.7841 30 1 -0.3633 -0.0818 1.0243 31 1 -0.3633 0.9281 -0.4412 32 1 -0.3634 -0.8462 -0.5832 33 1 1.6937 2.1313 -0.0005 34 1 4.5035 2.6421 -0.8972 35 1 4.1848 -2.0811 -0.0003 36 1 3.1769 -3.6240 -0.1986 37 1 0.3379 -4.4691 -1.8488 38 1 1.8696 -5.3089 -2.1910 39 1 0.4944 -6.2096 -1.5093 40 1 0.8900 -7.3270 1.0759 41 1 1.3547 -7.5947 -0.6210 42 1 2.1724 -9.4422 0.8028 43 1 3.5393 -8.5171 0.1359 44 1 3.9479 -8.9214 2.5086 45 1 2.3508 -8.2513 2.9300 46 1 3.7671 -7.8508 4.5555 47 1 2.0988 -5.5677 2.4440 48 1 3.5618 -4.8099 1.7639 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025533973.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:51:47 Heat of formation + Delta-G solvation = -56.855226 kcal Electronic energy + Delta-G solvation = -29231.353984 eV Core-core repulsion = 25285.579396 eV Total energy + Delta-G solvation = -3945.774589 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.03465 -40.74478 -39.55718 -38.07997 -36.95725 -35.13090 -34.64155 -33.00912 -32.26249 -31.20896 -29.82888 -28.91163 -27.00184 -25.69670 -24.74179 -23.78076 -23.41085 -22.25159 -21.60622 -20.77864 -19.49465 -19.33235 -18.84923 -18.19503 -16.98384 -16.84878 -16.49006 -16.22386 -16.02532 -15.83533 -15.44433 -15.37703 -15.23654 -14.88543 -14.53485 -14.20663 -14.12419 -13.99348 -13.95706 -13.64142 -13.61301 -13.44115 -13.32906 -12.91869 -12.72154 -12.66515 -12.57162 -12.33459 -11.92919 -11.86634 -11.72236 -11.61472 -11.38289 -11.10731 -11.00168 -10.72731 -10.47134 -10.44854 -10.22299 -9.98680 -8.90978 -8.23165 -5.44155 -0.57752 0.03247 1.58109 1.65581 1.67771 1.83018 2.05259 2.45246 2.64308 2.64842 3.20394 3.38621 3.47240 3.54813 3.60510 3.81473 3.87982 3.95135 3.99741 4.15439 4.23990 4.37712 4.40925 4.41970 4.53894 4.59254 4.63809 4.65691 4.74294 4.75802 4.79932 4.87239 4.95942 5.01816 5.03901 5.12733 5.19261 5.21494 5.26530 5.28535 5.40840 5.41719 5.52355 5.58457 5.87414 6.38682 6.42933 6.50118 6.73817 7.07666 7.10634 7.77663 8.24670 8.98128 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.011373 B = 0.003331 C = 0.002726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2461.336046 B = 8404.928987 C =10268.025020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.027 3.973 3 C -0.190 4.190 4 C 0.332 3.668 5 O -0.487 6.487 6 N -0.536 5.536 7 C 0.166 3.834 8 C -0.217 4.217 9 C 0.566 3.434 10 O -0.557 6.557 11 N -0.710 5.710 12 C 0.157 3.843 13 H 0.070 0.930 14 C -0.152 4.152 15 C -0.095 4.095 16 H 0.078 0.922 17 C -0.097 4.097 18 C -0.126 4.126 19 C 0.155 3.845 20 N -0.615 5.615 21 C -0.357 4.357 22 H 0.050 0.950 23 C -0.072 4.072 24 N -0.940 5.940 25 Si 1.113 2.887 26 H -0.285 1.285 27 H -0.291 1.291 28 H -0.272 1.272 29 C 0.156 3.844 30 H 0.078 0.922 31 H 0.093 0.907 32 H 0.085 0.915 33 H 0.177 0.823 34 H 0.426 0.574 35 H 0.175 0.825 36 H 0.407 0.593 37 H 0.052 0.948 38 H 0.068 0.932 39 H 0.082 0.918 40 H 0.052 0.948 41 H 0.092 0.908 42 H 0.075 0.925 43 H 0.057 0.943 44 H 0.037 0.963 45 H -0.004 1.004 46 H 0.251 0.749 47 H -0.004 1.004 48 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.504 15.546 -17.126 24.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.019 3.981 3 C -0.211 4.211 4 C 0.155 3.845 5 O -0.299 6.299 6 N -0.256 5.256 7 C 0.007 3.993 8 C -0.222 4.222 9 C 0.354 3.646 10 O -0.438 6.438 11 N -0.361 5.361 12 C 0.052 3.948 13 H 0.088 0.912 14 C -0.210 4.210 15 C -0.115 4.115 16 H 0.096 0.904 17 C -0.135 4.135 18 C -0.165 4.165 19 C 0.029 3.971 20 N -0.339 5.339 21 C -0.487 4.487 22 H 0.068 0.932 23 C -0.269 4.269 24 N -0.581 5.581 25 Si 0.937 3.063 26 H -0.212 1.212 27 H -0.217 1.217 28 H -0.197 1.197 29 C 0.030 3.970 30 H 0.096 0.904 31 H 0.111 0.889 32 H 0.104 0.896 33 H 0.194 0.806 34 H 0.289 0.711 35 H 0.192 0.808 36 H 0.243 0.757 37 H 0.071 0.929 38 H 0.087 0.913 39 H 0.101 0.899 40 H 0.071 0.929 41 H 0.111 0.889 42 H 0.093 0.907 43 H 0.076 0.924 44 H 0.055 0.945 45 H 0.014 0.986 46 H 0.061 0.939 47 H 0.014 0.986 48 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -6.285 14.751 -15.635 22.395 hybrid contribution -1.324 0.803 -0.537 1.639 sum -7.609 15.554 -16.172 23.693 Atomic orbital electron populations 1.21090 0.87939 1.04637 1.03848 1.20607 0.98315 0.90683 0.88464 1.22202 0.93157 1.00269 1.05456 1.19620 0.87790 0.85282 0.91833 1.84680 1.75838 1.33226 1.36144 1.67198 1.42840 0.98974 1.16609 1.22917 0.90329 0.95684 0.90342 1.20883 0.95265 0.94461 1.11617 1.18036 0.86706 0.83855 0.75976 1.90710 1.14451 1.87433 1.51191 1.46004 1.11342 1.05479 1.73265 1.20916 0.94413 0.81121 0.98325 0.91195 1.22126 1.01713 1.02455 0.94739 1.21748 0.97983 0.94809 0.96980 0.90359 1.21443 0.97034 0.92883 1.02141 1.21849 0.99159 0.98807 0.96638 1.20729 0.94804 0.86752 0.94779 1.44311 1.13873 1.01842 1.73874 1.20173 0.90959 1.20769 1.16768 0.93225 1.27227 1.09636 0.98742 0.91317 1.70878 1.05058 1.47507 1.34637 0.82911 0.70699 0.76294 0.76358 1.21170 1.21668 1.19732 1.20975 0.92710 0.90328 0.92942 0.90359 0.88854 0.89600 0.80609 0.71106 0.80841 0.75654 0.92854 0.91334 0.89946 0.92919 0.88917 0.90687 0.92385 0.94484 0.98556 0.93896 0.98581 0.93285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.14 8.89 71.24 0.63 -1.50 16 2 C 0.03 0.55 5.95 -19.43 -0.12 0.44 16 3 C -0.19 -3.19 9.71 22.43 0.22 -2.97 16 4 C 0.33 6.66 7.74 84.82 0.66 7.31 16 5 O -0.49 -7.75 13.55 -88.02 -1.19 -8.95 16 6 N -0.54 -12.99 10.37 -307.80 -3.19 -16.19 16 7 C 0.17 3.76 10.69 85.04 0.91 4.67 16 8 C -0.22 -5.04 5.89 -19.99 -0.12 -5.16 16 9 C 0.57 14.86 7.68 86.72 0.67 15.52 16 10 O -0.56 -17.06 13.13 -3.98 -0.05 -17.11 16 11 N -0.71 -17.20 4.43 -445.61 -1.97 -19.17 16 12 C 0.16 4.00 2.16 44.99 0.10 4.10 16 13 H 0.07 2.08 7.58 -2.39 -0.02 2.06 16 14 C -0.15 -3.08 9.14 71.98 0.66 -2.43 16 15 C -0.09 -2.83 1.97 -10.72 -0.02 -2.85 16 16 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 17 C -0.10 -2.78 4.86 30.62 0.15 -2.63 16 18 C -0.13 -4.32 6.07 30.53 0.19 -4.14 16 19 C 0.15 7.25 4.76 86.22 0.41 7.66 16 20 N -0.61 -30.48 2.79 -699.92 -1.95 -32.43 16 21 C -0.36 -19.84 9.43 84.03 0.79 -19.05 16 22 H 0.05 2.74 7.95 -2.91 -0.02 2.72 16 23 C -0.07 -4.13 4.64 84.86 0.39 -3.73 16 24 N -0.94 -58.00 12.60 21.65 0.27 -57.72 16 25 Si 1.11 50.99 29.99 68.60 2.06 53.04 16 26 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 27 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 28 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 29 C 0.16 6.33 5.56 86.36 0.48 6.81 16 30 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.09 1.08 8.07 -2.39 -0.02 1.06 16 32 H 0.09 1.89 5.85 -2.38 -0.01 1.87 16 33 H 0.18 1.81 8.06 -2.91 -0.02 1.79 16 34 H 0.43 2.02 9.06 -74.05 -0.67 1.35 16 35 H 0.17 3.36 6.45 -2.91 -0.02 3.34 16 36 H 0.41 8.68 6.50 -92.71 -0.60 8.08 16 37 H 0.05 1.15 8.14 -2.38 -0.02 1.13 16 38 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 39 H 0.08 1.47 6.41 -2.39 -0.02 1.46 16 40 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 41 H 0.09 2.02 6.37 -2.39 -0.02 2.01 16 42 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 43 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 44 H 0.04 1.96 6.65 -2.39 -0.02 1.95 16 45 H 0.00 -0.18 7.91 -2.39 -0.02 -0.19 16 46 H 0.25 15.98 7.01 -92.70 -0.65 15.33 16 47 H 0.00 -0.17 8.14 -2.39 -0.02 -0.18 16 48 H 0.05 1.98 7.44 -2.39 -0.02 1.96 16 Total: -1.00 -75.13 379.72 -0.20 -75.32 By element: Atomic # 1 Polarization: 21.30 SS G_CDS: -0.16 Total: 21.15 kcal Atomic # 6 Polarization: -3.94 SS G_CDS: 5.99 Total: 2.06 kcal Atomic # 7 Polarization: -118.67 SS G_CDS: -6.84 Total: -125.51 kcal Atomic # 8 Polarization: -24.82 SS G_CDS: -1.24 Total: -26.06 kcal Atomic # 14 Polarization: 50.99 SS G_CDS: 2.06 Total: 53.04 kcal Total: -75.13 -0.20 -75.32 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025533973.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.470 kcal (2) G-P(sol) polarization free energy of solvation -75.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds