Wall clock time and date at job start Tue Mar 31 2020 17:56:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35918 * 117.00432 * 2 1 4 4 C 1.38848 * 120.40375 * 359.97438 * 3 2 1 5 5 N 1.31887 * 120.99647 * 179.97438 * 4 3 2 6 6 C 1.31682 * 121.94323 * 359.97438 * 5 4 3 7 7 C 1.39520 * 120.69130 * 0.24840 * 6 5 4 8 8 C 1.47855 * 120.53301 * 179.72759 * 7 6 5 9 9 O 1.21554 * 120.00055 * 186.06037 * 8 7 6 10 10 N 1.34776 * 119.99628 * 6.04812 * 8 7 6 11 11 C 1.46507 * 119.99778 * 180.02562 * 10 8 7 12 12 C 1.53003 * 109.46950 * 275.00497 * 11 10 8 13 13 C 1.53003 * 109.47016 * 299.99866 * 12 11 10 14 14 C 1.53000 * 109.47212 * 299.99986 * 13 12 11 15 15 N 1.46501 * 109.47125 * 179.97438 * 14 13 12 16 16 C 1.36932 * 119.99393 * 85.00562 * 15 14 13 17 17 H 1.08004 * 120.00591 * 359.97438 * 16 15 14 18 18 C 1.38820 * 119.99933 * 179.97438 * 16 15 14 19 19 N 1.31619 * 119.99675 * 359.97438 * 18 16 15 20 20 Si 1.86794 * 119.99950 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47421 * 60.00381 * 20 18 16 22 22 H 1.48508 * 109.46906 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.47380 * 300.00008 * 20 18 16 24 24 C 1.53006 * 109.46754 * 60.00088 * 14 13 12 25 25 C 1.52992 * 109.47173 * 155.00329 * 11 10 8 26 26 C 1.38844 * 120.40378 * 179.97438 * 3 2 1 27 27 C 1.50701 * 120.88437 * 359.97438 * 26 3 2 28 28 H 1.08998 * 109.47508 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47128 * 300.00381 * 1 2 3 30 30 H 1.09008 * 109.46734 * 59.99958 * 1 2 3 31 31 H 1.07996 * 119.50583 * 359.97438 * 4 3 2 32 32 H 1.08003 * 119.65034 * 179.97438 * 6 5 4 33 33 H 0.96991 * 120.00156 * 0.02562 * 10 8 7 34 34 H 1.08999 * 109.46784 * 34.99726 * 11 10 8 35 35 H 1.08995 * 109.47087 * 59.99686 * 12 11 10 36 36 H 1.08999 * 109.46756 * 179.97438 * 12 11 10 37 37 H 1.09003 * 109.47015 * 180.02562 * 13 12 11 38 38 H 1.08997 * 109.46991 * 59.99959 * 13 12 11 39 39 H 1.08999 * 109.47353 * 300.00385 * 14 13 12 40 40 H 0.96993 * 120.00514 * 265.00207 * 15 14 13 41 41 H 0.97004 * 119.99928 * 180.02562 * 19 18 16 42 42 H 1.08998 * 109.46913 * 179.97438 * 24 14 13 43 43 H 1.08999 * 109.46948 * 60.00049 * 24 14 13 44 44 H 1.08997 * 109.47010 * 179.97438 * 25 11 10 45 45 H 1.09003 * 109.47218 * 300.00006 * 25 11 10 46 46 H 1.08995 * 109.46753 * 96.32874 * 27 26 3 47 47 H 1.09001 * 109.47288 * 216.33085 * 27 26 3 48 48 H 1.09005 * 109.46864 * 336.33092 * 27 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2110 0.0000 4 6 1.2982 2.3808 -0.0005 5 7 1.8849 3.5620 0.0000 6 6 3.1955 3.6890 0.0015 7 6 4.0200 2.5634 -0.0026 8 6 5.4913 2.7100 -0.0069 9 8 6.1995 1.7288 -0.1215 10 7 6.0470 3.9317 0.1160 11 6 7.5049 4.0771 0.1112 12 6 8.0447 3.8503 1.5247 13 6 7.4326 4.8807 2.4758 14 6 7.8031 6.2897 2.0083 15 7 7.2164 7.2763 2.9186 16 6 7.8761 7.6258 4.0665 17 1 8.8286 7.1739 4.3011 18 6 7.3205 8.5611 4.9289 19 7 6.1600 9.1122 4.6429 20 14 8.2200 9.0373 6.4952 21 1 9.5457 9.6107 6.1500 22 1 7.4224 10.0472 7.2365 23 1 8.4073 7.8334 7.3442 24 6 7.2632 6.5163 0.5947 25 6 7.8753 5.4859 -0.3564 26 6 3.4321 1.2933 0.0005 27 6 4.2810 0.0481 0.0017 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8901 31 1 0.2198 2.3227 -0.0014 32 1 3.6369 4.6747 0.0014 33 1 5.4819 4.7146 0.2077 34 1 7.9409 3.3429 -0.5663 35 1 7.7807 2.8466 1.8578 36 1 9.1293 3.9580 1.5210 37 1 7.8175 4.7195 3.4828 38 1 6.3480 4.7726 2.4793 39 1 8.8877 6.3978 2.0047 40 1 6.3609 7.6820 2.7082 41 1 5.7720 9.7661 5.2453 42 1 7.5268 7.5202 0.2618 43 1 6.1786 6.4082 0.5984 44 1 8.9599 5.5942 -0.3595 45 1 7.4908 5.6475 -1.3634 46 1 4.5796 -0.1889 -1.0194 47 1 5.1695 0.2146 0.6108 48 1 3.7077 -0.7820 0.4146 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026515363.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:56:07 Heat of formation + Delta-G solvation = -55.564138 kcal Electronic energy + Delta-G solvation = -29021.426737 eV Core-core repulsion = 25075.708134 eV Total energy + Delta-G solvation = -3945.718603 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.17010 -40.99089 -39.43820 -38.79578 -36.34685 -34.77782 -34.42006 -32.79149 -31.67371 -31.45350 -29.33921 -28.68638 -28.45967 -25.73007 -25.04800 -23.53254 -23.45085 -22.40134 -22.06740 -20.21208 -19.49126 -19.06342 -18.47624 -17.54820 -17.39781 -17.02323 -16.92868 -16.57894 -16.35253 -15.91195 -15.41384 -15.20469 -15.17658 -15.00850 -14.70175 -14.42953 -14.02917 -13.87338 -13.83356 -13.76855 -13.54625 -13.20662 -13.06897 -13.01103 -12.80635 -12.77749 -12.68734 -12.38043 -12.19431 -12.00720 -11.98556 -11.67528 -11.28667 -11.17738 -11.07340 -10.80518 -10.66118 -10.42549 -9.98663 -9.54523 -8.95573 -7.91906 -5.18688 -0.52005 0.07883 1.47021 1.49077 1.55004 1.74159 1.91472 2.33679 2.57552 2.67522 3.26314 3.40684 3.41114 3.60786 3.64535 3.76565 3.87879 3.93218 4.01560 4.10318 4.33848 4.34366 4.37917 4.39282 4.42036 4.52971 4.62273 4.63590 4.68714 4.70695 4.73159 4.76339 4.84261 5.03989 5.05316 5.11908 5.14390 5.19765 5.28794 5.31762 5.39982 5.50190 5.57913 5.60707 5.68178 6.12036 6.31387 6.46370 6.71732 7.12441 7.37279 8.16135 8.37894 9.31285 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.014089 B = 0.002774 C = 0.002518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1986.884903 B =10092.914426 C =11115.634702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.318 6.318 3 C 0.067 3.933 4 C 0.043 3.957 5 N -0.473 5.473 6 C 0.099 3.901 7 C -0.165 4.165 8 C 0.565 3.435 9 O -0.554 6.554 10 N -0.704 5.704 11 C 0.153 3.847 12 C -0.119 4.119 13 C -0.121 4.121 14 C 0.172 3.828 15 N -0.737 5.737 16 C -0.235 4.235 17 H 0.071 0.929 18 C -0.076 4.076 19 N -0.969 5.969 20 Si 0.966 3.034 21 H -0.278 1.278 22 H -0.297 1.297 23 H -0.282 1.282 24 C -0.117 4.117 25 C -0.110 4.110 26 C -0.032 4.032 27 C -0.103 4.103 28 H 0.125 0.875 29 H 0.068 0.932 30 H 0.072 0.928 31 H 0.192 0.808 32 H 0.175 0.825 33 H 0.406 0.594 34 H 0.094 0.906 35 H 0.050 0.950 36 H 0.082 0.918 37 H 0.031 0.969 38 H 0.043 0.957 39 H 0.042 0.958 40 H 0.372 0.628 41 H 0.249 0.751 42 H 0.064 0.936 43 H 0.060 0.940 44 H 0.092 0.908 45 H 0.091 0.909 46 H 0.079 0.921 47 H 0.080 0.920 48 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.779 -17.836 -15.325 25.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.230 6.230 3 C 0.019 3.981 4 C -0.114 4.114 5 N -0.182 5.182 6 C -0.060 4.060 7 C -0.170 4.170 8 C 0.352 3.648 9 O -0.434 6.434 10 N -0.356 5.356 11 C 0.049 3.951 12 C -0.158 4.158 13 C -0.161 4.161 14 C 0.064 3.936 15 N -0.376 5.376 16 C -0.367 4.367 17 H 0.089 0.911 18 C -0.268 4.268 19 N -0.620 5.620 20 Si 0.796 3.204 21 H -0.204 1.204 22 H -0.223 1.223 23 H -0.209 1.209 24 C -0.156 4.156 25 C -0.149 4.149 26 C -0.041 4.041 27 C -0.159 4.159 28 H 0.143 0.857 29 H 0.087 0.913 30 H 0.091 0.909 31 H 0.209 0.791 32 H 0.192 0.808 33 H 0.244 0.756 34 H 0.112 0.888 35 H 0.069 0.931 36 H 0.100 0.900 37 H 0.049 0.951 38 H 0.062 0.938 39 H 0.060 0.940 40 H 0.204 0.796 41 H 0.058 0.942 42 H 0.082 0.918 43 H 0.078 0.922 44 H 0.111 0.889 45 H 0.109 0.891 46 H 0.098 0.902 47 H 0.099 0.901 48 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -8.558 -17.959 -15.278 25.084 hybrid contribution -0.043 0.443 1.380 1.450 sum -8.602 -17.517 -13.898 23.958 Atomic orbital electron populations 1.23507 0.75625 1.06360 1.02791 1.86086 1.23910 1.24736 1.88267 1.19770 0.91967 0.86898 0.99459 1.23575 1.02141 0.86379 0.99346 1.67599 1.12026 1.26894 1.11671 1.23081 0.88838 0.98580 0.95516 1.20731 0.94473 0.94293 1.07506 1.18025 0.86948 0.83578 0.76294 1.90712 1.63671 1.38041 1.50983 1.46045 1.08568 1.08239 1.72716 1.21014 0.78917 0.98581 0.96581 1.21847 1.01080 0.97955 0.94961 1.22010 0.99672 0.96511 0.97905 1.20476 0.96069 0.87607 0.89414 1.42623 1.23869 1.48192 1.22910 1.19549 1.01805 1.17188 0.98168 0.91076 1.25472 0.98294 1.00756 1.02318 1.69793 1.19637 1.33197 1.39335 0.85320 0.77737 0.77354 0.80034 1.20395 1.22288 1.20870 1.21715 1.00217 0.99583 0.94040 1.21755 1.02727 0.91249 0.99127 1.20037 0.91795 0.95955 0.96334 1.20786 0.98850 0.92752 1.03539 0.85713 0.91313 0.90930 0.79123 0.80841 0.75580 0.88803 0.93109 0.89978 0.95056 0.93772 0.94034 0.79584 0.94177 0.91765 0.92162 0.88914 0.89077 0.90237 0.90105 0.90642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.09 9.82 113.37 1.11 1.20 16 2 O -0.32 -5.41 9.57 -92.62 -0.89 -6.30 16 3 C 0.07 1.38 6.68 22.56 0.15 1.53 16 4 C 0.04 0.82 10.21 84.83 0.87 1.69 16 5 N -0.47 -11.12 10.34 -194.40 -2.01 -13.13 16 6 C 0.10 2.28 10.69 85.02 0.91 3.19 16 7 C -0.16 -4.07 5.89 -20.01 -0.12 -4.19 16 8 C 0.56 14.86 7.69 86.79 0.67 15.52 16 9 O -0.55 -16.92 13.18 -3.89 -0.05 -16.97 16 10 N -0.70 -16.31 4.19 -445.39 -1.86 -18.17 16 11 C 0.15 3.49 2.78 44.99 0.13 3.62 16 12 C -0.12 -3.25 5.60 30.60 0.17 -3.08 16 13 C -0.12 -4.19 5.34 30.60 0.16 -4.02 16 14 C 0.17 6.34 2.77 44.99 0.12 6.46 16 15 N -0.74 -35.98 5.12 -322.92 -1.65 -37.64 16 16 C -0.23 -12.93 9.93 84.04 0.83 -12.10 16 17 H 0.07 3.80 7.83 -2.91 -0.02 3.78 16 18 C -0.08 -4.37 5.50 84.86 0.47 -3.90 16 19 N -0.97 -59.01 13.06 21.65 0.28 -58.73 16 20 Si 0.97 46.37 29.55 68.60 2.03 48.40 16 21 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 22 H -0.30 -14.37 7.11 99.48 0.71 -13.66 16 23 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 24 C -0.12 -3.25 5.22 30.60 0.16 -3.09 16 25 C -0.11 -2.24 5.61 30.59 0.17 -2.07 16 26 C -0.03 -0.78 5.97 -19.30 -0.12 -0.89 16 27 C -0.10 -2.37 8.69 71.24 0.62 -1.76 16 28 H 0.12 0.46 8.14 -2.39 -0.02 0.44 16 29 H 0.07 0.42 7.68 -2.39 -0.02 0.40 16 30 H 0.07 0.38 7.67 -2.38 -0.02 0.36 16 31 H 0.19 2.29 6.30 -2.91 -0.02 2.28 16 32 H 0.17 3.34 6.46 -2.91 -0.02 3.33 16 33 H 0.41 8.58 4.96 -92.72 -0.46 8.12 16 34 H 0.09 2.10 7.58 -2.39 -0.02 2.09 16 35 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 36 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 37 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 38 H 0.04 1.59 7.60 -2.39 -0.02 1.57 16 39 H 0.04 1.58 8.08 -2.39 -0.02 1.56 16 40 H 0.37 19.48 7.80 -92.71 -0.72 18.76 16 41 H 0.25 14.85 8.31 -92.71 -0.77 14.08 16 42 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 43 H 0.06 1.60 6.51 -2.39 -0.02 1.59 16 44 H 0.09 1.71 8.14 -2.39 -0.02 1.70 16 45 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 46 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 47 H 0.08 2.16 5.98 -2.39 -0.01 2.14 16 48 H 0.07 1.54 7.44 -2.38 -0.02 1.52 16 Total: -1.00 -71.16 380.04 1.97 -69.20 By element: Atomic # 1 Polarization: 35.41 SS G_CDS: -0.19 Total: 35.22 kcal Atomic # 6 Polarization: -8.20 SS G_CDS: 6.31 Total: -1.89 kcal Atomic # 7 Polarization: -122.42 SS G_CDS: -5.24 Total: -127.66 kcal Atomic # 8 Polarization: -22.33 SS G_CDS: -0.94 Total: -23.27 kcal Atomic # 14 Polarization: 46.37 SS G_CDS: 2.03 Total: 48.40 kcal Total: -71.16 1.97 -69.20 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026515363.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.634 kcal (2) G-P(sol) polarization free energy of solvation -71.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds