Wall clock time and date at job start Tue Mar 31 2020 17:54:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35923 * 117.00036 * 2 1 4 4 C 1.38847 * 120.40621 * 0.02562 * 3 2 1 5 5 N 1.31874 * 120.99961 * 179.97438 * 4 3 2 6 6 C 1.31687 * 121.94235 * 359.69316 * 5 4 3 7 7 C 1.39519 * 120.68894 * 0.59185 * 6 5 4 8 8 C 1.47857 * 120.53260 * 179.70074 * 7 6 5 9 9 O 1.21543 * 119.99761 * 127.05216 * 8 7 6 10 10 N 1.34779 * 119.99769 * 307.05230 * 8 7 6 11 11 C 1.46924 * 120.62955 * 3.92267 * 10 8 7 12 12 C 1.53192 * 108.77380 * 233.58407 * 11 10 8 13 13 C 1.53035 * 109.31662 * 305.36837 * 12 11 10 14 14 C 1.53038 * 109.53749 * 61.36176 * 13 12 11 15 15 H 1.09001 * 109.49596 * 58.62292 * 14 13 12 16 16 N 1.46498 * 109.49870 * 178.68038 * 14 13 12 17 17 C 1.46507 * 119.99651 * 60.00634 * 16 14 13 18 18 C 1.36933 * 120.00726 * 240.00374 * 16 14 13 19 19 H 1.08002 * 119.99759 * 29.17861 * 18 16 14 20 20 C 1.38808 * 120.00352 * 209.18907 * 18 16 14 21 21 N 1.31629 * 120.00106 * 7.70166 * 20 18 16 22 22 Si 1.86801 * 120.00252 * 187.70376 * 20 18 16 23 23 H 1.48493 * 109.47225 * 94.98927 * 22 20 18 24 24 H 1.48497 * 109.47300 * 214.99236 * 22 20 18 25 25 H 1.48503 * 109.46833 * 334.99247 * 22 20 18 26 26 C 1.46921 * 120.62853 * 183.90390 * 10 8 7 27 27 C 1.38840 * 120.40174 * 179.97438 * 3 2 1 28 28 C 1.50704 * 120.88312 * 0.05017 * 27 3 2 29 29 H 1.09007 * 109.46461 * 59.99962 * 1 2 3 30 30 H 1.09001 * 109.47165 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47230 * 300.00424 * 1 2 3 32 32 H 1.08002 * 119.50156 * 359.94820 * 4 3 2 33 33 H 1.08001 * 119.65367 * 180.31442 * 6 5 4 34 34 H 1.09004 * 109.58680 * 113.80307 * 11 10 8 35 35 H 1.09000 * 109.70747 * 353.44621 * 11 10 8 36 36 H 1.08998 * 109.49810 * 185.41331 * 12 11 10 37 37 H 1.09003 * 109.52443 * 65.33806 * 12 11 10 38 38 H 1.09003 * 109.46005 * 301.34634 * 13 12 11 39 39 H 1.09001 * 109.46444 * 181.38549 * 13 12 11 40 40 H 1.08996 * 109.47130 * 85.31595 * 17 16 14 41 41 H 1.08996 * 109.46929 * 205.31707 * 17 16 14 42 42 H 1.09004 * 109.46557 * 325.31752 * 17 16 14 43 43 H 0.96998 * 119.99917 * 180.02562 * 21 20 18 44 44 H 1.09005 * 109.58909 * 6.62071 * 26 10 8 45 45 H 1.09007 * 109.58486 * 246.20013 * 26 10 8 46 46 H 1.08994 * 109.46770 * 274.54045 * 28 27 3 47 47 H 1.09002 * 109.46730 * 34.54198 * 28 27 3 48 48 H 1.08997 * 109.46831 * 154.54344 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2111 0.0000 4 6 1.2982 2.3809 0.0005 5 7 1.8847 3.5620 0.0010 6 6 3.1954 3.6891 0.0071 7 6 4.0199 2.5636 0.0008 8 6 5.4912 2.7103 0.0009 9 8 6.1592 2.1350 0.8377 10 7 6.0915 3.4819 -0.9269 11 6 5.2933 4.2512 -1.8910 12 6 5.7688 3.9114 -3.3071 13 6 7.2769 4.1519 -3.4060 14 6 8.0067 3.2379 -2.4191 15 1 7.7697 2.1978 -2.6430 16 7 9.4520 3.4461 -2.5368 17 6 10.0244 4.7704 -2.2816 18 6 10.2681 2.4032 -2.8851 19 1 9.8893 1.6056 -3.5070 20 6 11.5820 2.3709 -2.4388 21 7 12.0009 3.2576 -1.5608 22 14 12.7560 1.0690 -3.0841 23 1 13.5298 1.6218 -4.2245 24 1 13.6894 0.6642 -2.0024 25 1 11.9818 -0.1141 -3.5384 26 6 7.5566 3.5699 -0.9930 27 6 3.4321 1.2934 0.0005 28 6 4.2810 0.0483 0.0000 29 1 -0.3632 0.5139 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 0.2197 2.3226 0.0001 33 1 3.6367 4.6748 0.0124 34 1 5.4260 5.3173 -1.7071 35 1 4.2400 3.9907 -1.7869 36 1 5.2513 4.5458 -4.0267 37 1 5.5523 2.8651 -3.5229 38 1 7.4951 5.1926 -3.1665 39 1 7.6137 3.9344 -4.4196 40 1 10.2048 4.8885 -1.2132 41 1 10.9656 4.8696 -2.8222 42 1 9.3284 5.5382 -2.6197 43 1 12.9192 3.2352 -1.2492 44 1 7.9974 2.8577 -0.2954 45 1 7.8739 4.5806 -0.7357 46 1 4.4180 -0.2984 1.0242 47 1 3.7864 -0.7284 -0.5834 48 1 5.2524 0.2711 -0.4412 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027462941.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:54:50 Heat of formation + Delta-G solvation = -27.029938 kcal Electronic energy + Delta-G solvation = -29664.479530 eV Core-core repulsion = 25719.998263 eV Total energy + Delta-G solvation = -3944.481267 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.26440 -40.94954 -39.20388 -38.74941 -36.81469 -34.92200 -34.09105 -32.86589 -32.07643 -30.29855 -28.99312 -28.49094 -28.02694 -26.74025 -25.40921 -24.39534 -23.48525 -23.03933 -21.32954 -20.16345 -19.18267 -18.71826 -18.58272 -17.65500 -17.34510 -17.05531 -16.98312 -16.82008 -16.10572 -15.74738 -15.34840 -15.29039 -15.08210 -14.86285 -14.80490 -14.43193 -14.21000 -14.02100 -13.89594 -13.78158 -13.71523 -13.56037 -12.97329 -12.94783 -12.84395 -12.74903 -12.49836 -12.36229 -12.22378 -12.15679 -12.11355 -11.78526 -11.70641 -11.39009 -11.36234 -10.65386 -10.62425 -10.44353 -9.76238 -9.49729 -8.69117 -7.87799 -5.40303 -0.38952 0.06037 1.40741 1.44769 1.45633 1.54359 1.81191 2.23855 2.48520 2.55818 3.21586 3.28434 3.40312 3.46626 3.56437 3.61573 3.88867 4.00161 4.04814 4.09471 4.14587 4.23450 4.36165 4.37996 4.43105 4.44073 4.57331 4.57913 4.61344 4.66907 4.78773 4.79904 4.86344 4.94973 4.98682 5.02756 5.03828 5.13273 5.25601 5.29709 5.40137 5.43377 5.55005 5.61854 5.69063 6.15115 6.30360 6.35093 6.70811 6.97777 7.14230 7.83570 8.29315 9.16271 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.018304 B = 0.002991 C = 0.002785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1529.359762 B = 9359.321096 C =10051.635358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.320 6.320 3 C 0.077 3.923 4 C 0.044 3.956 5 N -0.458 5.458 6 C 0.099 3.901 7 C -0.148 4.148 8 C 0.559 3.441 9 O -0.575 6.575 10 N -0.593 5.593 11 C 0.096 3.904 12 C -0.121 4.121 13 C -0.122 4.122 14 C 0.168 3.832 15 H 0.043 0.957 16 N -0.606 5.606 17 C 0.177 3.823 18 C -0.268 4.268 19 H 0.064 0.936 20 C -0.047 4.047 21 N -0.934 5.934 22 Si 0.968 3.032 23 H -0.281 1.281 24 H -0.295 1.295 25 H -0.270 1.270 26 C 0.116 3.884 27 C -0.046 4.046 28 C -0.103 4.103 29 H 0.075 0.925 30 H 0.122 0.878 31 H 0.072 0.928 32 H 0.198 0.802 33 H 0.182 0.818 34 H 0.096 0.904 35 H 0.103 0.897 36 H 0.109 0.891 37 H 0.057 0.943 38 H 0.068 0.932 39 H 0.058 0.942 40 H -0.008 1.008 41 H 0.026 0.974 42 H 0.034 0.966 43 H 0.249 0.751 44 H 0.046 0.954 45 H 0.065 0.935 46 H 0.077 0.923 47 H 0.090 0.910 48 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.782 0.091 -0.847 27.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.232 6.232 3 C 0.029 3.971 4 C -0.114 4.114 5 N -0.167 5.167 6 C -0.059 4.059 7 C -0.153 4.153 8 C 0.347 3.653 9 O -0.455 6.455 10 N -0.324 5.324 11 C -0.026 4.026 12 C -0.160 4.160 13 C -0.161 4.161 14 C 0.060 3.940 15 H 0.061 0.939 16 N -0.329 5.329 17 C 0.032 3.968 18 C -0.398 4.398 19 H 0.082 0.918 20 C -0.243 4.243 21 N -0.580 5.580 22 Si 0.796 3.204 23 H -0.208 1.208 24 H -0.222 1.222 25 H -0.195 1.195 26 C -0.009 4.009 27 C -0.055 4.055 28 C -0.160 4.160 29 H 0.093 0.907 30 H 0.140 0.860 31 H 0.091 0.909 32 H 0.214 0.786 33 H 0.198 0.802 34 H 0.115 0.885 35 H 0.121 0.879 36 H 0.127 0.873 37 H 0.076 0.924 38 H 0.086 0.914 39 H 0.077 0.923 40 H 0.011 0.989 41 H 0.045 0.955 42 H 0.052 0.948 43 H 0.059 0.941 44 H 0.065 0.935 45 H 0.083 0.917 46 H 0.095 0.905 47 H 0.109 0.891 48 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -27.696 0.351 -0.370 27.701 hybrid contribution 1.916 -1.412 0.193 2.388 sum -25.780 -1.061 -0.178 25.802 Atomic orbital electron populations 1.23527 0.75421 1.06325 1.03027 1.86106 1.24113 1.24860 1.88125 1.19671 0.91335 0.87166 0.98904 1.23579 1.02160 0.86083 0.99569 1.67655 1.11197 1.26563 1.11321 1.23033 0.88512 0.98110 0.96258 1.20564 0.93179 0.95016 1.06584 1.18465 0.87488 0.78389 0.80962 1.90791 1.66487 1.48852 1.39379 1.48229 1.06949 1.45302 1.31966 1.22315 0.95755 0.96710 0.87779 1.21869 0.94994 1.02556 0.96571 1.21909 0.95035 1.00033 0.99127 1.20783 0.83593 0.97492 0.92168 0.93892 1.44076 1.01649 1.06731 1.80412 1.20508 0.95253 0.84389 0.96663 1.19480 0.93481 1.02455 1.24420 0.91836 1.25943 1.00529 1.00313 0.97469 1.70189 1.16402 1.38276 1.33126 0.85239 0.78734 0.79292 0.77117 1.20784 1.22183 1.19468 1.22052 0.78239 1.00991 0.99581 1.19798 0.92195 0.95068 0.98389 1.20607 0.97834 0.94315 1.03219 0.90663 0.86021 0.90946 0.78551 0.80151 0.88541 0.87877 0.87270 0.92420 0.91351 0.92303 0.98935 0.95466 0.94768 0.94133 0.93503 0.91684 0.90491 0.89136 0.93278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.07 9.82 113.37 1.11 1.18 16 2 O -0.32 -5.32 9.75 -92.68 -0.90 -6.22 16 3 C 0.08 1.53 6.68 22.56 0.15 1.68 16 4 C 0.04 0.71 10.21 84.83 0.87 1.58 16 5 N -0.46 -9.04 10.34 -194.40 -2.01 -11.05 16 6 C 0.10 2.11 8.58 85.02 0.73 2.84 16 7 C -0.15 -3.97 4.93 -20.01 -0.10 -4.07 16 8 C 0.56 19.10 6.26 86.79 0.54 19.64 16 9 O -0.58 -25.03 15.40 -3.85 -0.06 -25.09 16 10 N -0.59 -18.71 2.97 -822.31 -2.44 -21.15 16 11 C 0.10 2.06 5.48 86.36 0.47 2.54 16 12 C -0.12 -2.70 6.08 30.67 0.19 -2.51 16 13 C -0.12 -3.75 5.11 30.62 0.16 -3.59 16 14 C 0.17 6.89 2.75 45.07 0.12 7.02 16 15 H 0.04 1.92 7.89 -2.39 -0.02 1.90 16 16 N -0.61 -30.64 2.80 -702.35 -1.97 -32.61 16 17 C 0.18 8.67 7.97 127.77 1.02 9.68 16 18 C -0.27 -15.08 9.51 84.03 0.80 -14.28 16 19 H 0.06 3.52 7.84 -2.91 -0.02 3.50 16 20 C -0.05 -2.68 5.13 84.86 0.44 -2.24 16 21 N -0.93 -56.43 10.88 21.65 0.24 -56.19 16 22 Si 0.97 46.17 29.56 68.60 2.03 48.19 16 23 H -0.28 -13.02 7.11 99.48 0.71 -12.32 16 24 H -0.30 -14.22 7.11 99.48 0.71 -13.52 16 25 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16 26 C 0.12 4.64 5.78 86.36 0.50 5.14 16 27 C -0.05 -1.17 5.96 -19.30 -0.12 -1.29 16 28 C -0.10 -2.79 9.07 71.24 0.65 -2.14 16 29 H 0.07 0.27 7.68 -2.38 -0.02 0.25 16 30 H 0.12 0.38 8.14 -2.39 -0.02 0.36 16 31 H 0.07 0.29 7.67 -2.39 -0.02 0.27 16 32 H 0.20 1.66 6.30 -2.91 -0.02 1.64 16 33 H 0.18 3.12 7.27 -2.91 -0.02 3.10 16 34 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 35 H 0.10 1.87 4.69 -2.39 -0.01 1.86 16 36 H 0.11 1.71 8.14 -2.39 -0.02 1.69 16 37 H 0.06 1.38 8.14 -2.39 -0.02 1.37 16 38 H 0.07 2.01 6.75 -2.39 -0.02 1.99 16 39 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 40 H -0.01 -0.41 7.78 -2.39 -0.02 -0.43 16 41 H 0.03 1.45 6.97 -2.39 -0.02 1.43 16 42 H 0.03 1.39 6.48 -2.38 -0.02 1.38 16 43 H 0.25 14.63 8.31 -92.71 -0.77 13.86 16 44 H 0.05 2.30 7.03 -2.38 -0.02 2.28 16 45 H 0.06 2.57 7.51 -2.38 -0.02 2.55 16 46 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 47 H 0.09 2.06 7.76 -2.39 -0.02 2.05 16 48 H 0.05 1.58 6.69 -2.39 -0.02 1.56 16 Total: -1.00 -75.55 375.81 3.38 -72.17 By element: Atomic # 1 Polarization: 9.80 SS G_CDS: 0.97 Total: 10.77 kcal Atomic # 6 Polarization: 13.66 SS G_CDS: 7.53 Total: 21.19 kcal Atomic # 7 Polarization: -114.82 SS G_CDS: -6.18 Total: -121.01 kcal Atomic # 8 Polarization: -30.35 SS G_CDS: -0.96 Total: -31.31 kcal Atomic # 14 Polarization: 46.17 SS G_CDS: 2.03 Total: 48.19 kcal Total: -75.55 3.38 -72.17 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027462941.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.140 kcal (2) G-P(sol) polarization free energy of solvation -75.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds