Wall clock time and date at job start Tue Mar 31 2020 17:54:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35927 * 116.99911 * 2 1 4 4 C 1.38845 * 120.40154 * 359.97438 * 3 2 1 5 5 N 1.31892 * 120.99475 * 179.97438 * 4 3 2 6 6 C 1.31671 * 121.94406 * 0.02562 * 5 4 3 7 7 C 1.39527 * 120.69189 * 0.26990 * 6 5 4 8 8 C 1.47854 * 120.53259 * 179.69956 * 7 6 5 9 9 O 1.21550 * 120.00083 * 227.93153 * 8 7 6 10 10 N 1.34780 * 119.99795 * 47.93563 * 8 7 6 11 11 C 1.46922 * 120.63002 * 5.78901 * 10 8 7 12 12 C 1.53195 * 108.77424 * 126.37264 * 11 10 8 13 13 C 1.53035 * 109.31104 * 54.63591 * 12 11 10 14 14 C 1.53040 * 109.53709 * 298.63214 * 13 12 11 15 15 H 1.09000 * 109.50309 * 301.38256 * 14 13 12 16 16 N 1.46506 * 109.49600 * 181.31758 * 14 13 12 17 17 C 1.46494 * 120.00152 * 299.99983 * 16 14 13 18 18 C 1.36940 * 119.99872 * 120.00489 * 16 14 13 19 19 H 1.07999 * 119.99904 * 22.73939 * 18 16 14 20 20 C 1.38809 * 119.99832 * 202.74352 * 18 16 14 21 21 N 1.31616 * 120.00141 * 10.80859 * 20 18 16 22 22 Si 1.86802 * 120.00158 * 190.80294 * 20 18 16 23 23 H 1.48493 * 109.46856 * 90.00135 * 22 20 18 24 24 H 1.48497 * 109.47295 * 210.00317 * 22 20 18 25 25 H 1.48508 * 109.46718 * 330.00354 * 22 20 18 26 26 C 1.46927 * 120.62833 * 185.51371 * 10 8 7 27 27 C 1.38841 * 120.40536 * 179.97438 * 3 2 1 28 28 C 1.50705 * 120.88138 * 0.03568 * 27 3 2 29 29 H 1.09005 * 109.46870 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47456 * 299.99905 * 1 2 3 31 31 H 1.09006 * 109.46964 * 60.00463 * 1 2 3 32 32 H 1.07995 * 119.50400 * 0.02562 * 4 3 2 33 33 H 1.07997 * 119.65678 * 180.02562 * 6 5 4 34 34 H 1.08998 * 109.59072 * 246.16039 * 11 10 8 35 35 H 1.09003 * 109.58693 * 6.44238 * 11 10 8 36 36 H 1.08997 * 109.49781 * 174.59093 * 12 11 10 37 37 H 1.09002 * 109.49426 * 294.68281 * 12 11 10 38 38 H 1.08995 * 109.46471 * 58.65822 * 13 12 11 39 39 H 1.09004 * 109.46258 * 178.61669 * 13 12 11 40 40 H 1.09007 * 109.46831 * 92.98397 * 17 16 14 41 41 H 1.08995 * 109.47647 * 212.98245 * 17 16 14 42 42 H 1.09004 * 109.47342 * 332.98991 * 17 16 14 43 43 H 0.97004 * 120.00074 * 179.97438 * 21 20 18 44 44 H 1.08996 * 109.58870 * 353.41581 * 26 10 8 45 45 H 1.08999 * 109.58594 * 113.84240 * 26 10 8 46 46 H 1.09003 * 109.46499 * 86.70746 * 28 27 3 47 47 H 1.08998 * 109.47539 * 206.70777 * 28 27 3 48 48 H 1.09004 * 109.47076 * 326.71522 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2111 0.0000 4 6 1.2980 2.3808 -0.0005 5 7 1.8845 3.5621 0.0000 6 6 3.1951 3.6892 0.0005 7 6 4.0198 2.5637 -0.0051 8 6 5.4910 2.7106 -0.0112 9 8 6.1624 2.0705 -0.7967 10 7 6.0876 3.5540 0.8543 11 6 5.3050 4.2384 1.8925 12 6 5.9504 3.9676 3.2553 13 6 7.4243 4.3764 3.2074 14 6 8.1534 3.5404 2.1530 15 1 8.0576 2.4825 2.3974 16 7 9.5707 3.9104 2.1298 17 6 9.9632 5.2879 1.8221 18 6 10.5287 2.9687 2.3958 19 1 10.3071 1.9202 2.2616 20 6 11.7844 3.3617 2.8379 21 7 11.9925 4.6085 3.2047 22 14 13.1790 2.1211 2.9124 23 1 13.9087 2.1186 1.6191 24 1 14.1123 2.4906 4.0066 25 1 12.6243 0.7679 3.1706 26 6 7.5339 3.8020 0.7813 27 6 3.4320 1.2936 0.0005 28 6 4.2810 0.0485 0.0003 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8901 32 1 0.2196 2.3225 -0.0005 33 1 3.6364 4.6749 0.0013 34 1 5.2985 5.3108 1.6980 35 1 4.2827 3.8601 1.8884 36 1 5.4369 4.5469 4.0226 37 1 5.8748 2.9056 3.4890 38 1 7.5001 5.4327 2.9493 39 1 7.8800 4.2077 4.1831 40 1 10.0667 5.8519 2.7491 41 1 10.9148 5.2845 1.2907 42 1 9.1999 5.7523 1.1976 43 1 12.8700 4.8831 3.5140 44 1 7.9825 3.1342 0.0460 45 1 7.7130 4.8381 0.4943 46 1 4.4372 -0.2845 -1.0258 47 1 5.2440 0.2652 0.4626 48 1 3.7757 -0.7359 0.5638 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027462942.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:54:54 Heat of formation + Delta-G solvation = -4.529868 kcal Electronic energy + Delta-G solvation = -29555.793664 eV Core-core repulsion = 25612.288073 eV Total energy + Delta-G solvation = -3943.505591 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.33037 -39.86759 -38.29808 -37.43482 -35.14819 -33.98715 -32.50996 -31.41232 -30.92185 -28.77592 -28.10446 -27.89976 -26.01878 -25.53627 -23.85249 -23.32753 -22.48209 -21.64951 -20.04312 -18.85535 -18.11931 -17.74652 -16.76791 -16.69330 -16.43070 -16.21100 -15.80135 -15.22155 -14.81505 -14.38968 -14.19812 -14.02813 -13.94736 -13.67866 -13.38318 -13.17324 -13.01014 -12.95740 -12.65961 -12.55556 -12.40278 -12.28062 -11.98525 -11.93767 -11.83544 -11.05258 -10.96494 -10.83852 -10.66703 -10.42746 -10.33908 -10.27993 -10.10661 -9.88626 -9.76293 -9.67622 -9.42868 -8.74169 -8.61569 -8.38379 -6.75941 -5.72020 -3.18470 0.48591 0.92720 2.54836 2.81191 3.11717 3.40173 3.46044 3.46590 3.47858 4.06881 4.20981 4.36760 4.47812 4.50057 4.59894 4.70810 4.83472 4.94292 4.98793 5.09797 5.16165 5.30110 5.31119 5.45008 5.49291 5.52153 5.57187 5.58667 5.75067 5.84199 5.91526 5.95796 5.98010 6.14646 6.17469 6.21073 6.37190 6.50140 6.62102 6.78003 6.79507 6.93038 6.99239 7.40465 7.49843 7.55695 7.73051 7.82786 8.19357 8.40870 9.24355 9.86338 10.34499 11.33021 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.021055 B = 0.002811 C = 0.002640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1329.541658 B = 9957.895670 C =10605.053018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.306 6.306 3 C 0.070 3.930 4 C 0.032 3.968 5 N -0.455 5.455 6 C 0.098 3.902 7 C -0.138 4.138 8 C 0.561 3.439 9 O -0.526 6.526 10 N -0.595 5.595 11 C 0.102 3.898 12 C -0.131 4.131 13 C -0.132 4.132 14 C 0.169 3.831 15 H 0.065 0.935 16 N -0.593 5.593 17 C 0.163 3.837 18 C -0.254 4.254 19 H 0.069 0.931 20 C 0.002 3.998 21 N -0.909 5.909 22 Si 0.906 3.094 23 H -0.288 1.288 24 H -0.291 1.291 25 H -0.279 1.279 26 C 0.096 3.904 27 C -0.023 4.023 28 C -0.109 4.109 29 H 0.104 0.896 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.161 0.839 33 H 0.165 0.835 34 H 0.071 0.929 35 H 0.079 0.921 36 H 0.070 0.930 37 H 0.063 0.937 38 H 0.058 0.942 39 H 0.067 0.933 40 H 0.027 0.973 41 H 0.047 0.953 42 H -0.003 1.003 43 H 0.252 0.748 44 H 0.092 0.908 45 H 0.067 0.933 46 H 0.083 0.917 47 H 0.077 0.923 48 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.379 -3.583 -4.036 24.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.218 6.218 3 C 0.022 3.978 4 C -0.125 4.125 5 N -0.164 5.164 6 C -0.061 4.061 7 C -0.143 4.143 8 C 0.348 3.652 9 O -0.403 6.403 10 N -0.328 5.328 11 C -0.021 4.021 12 C -0.170 4.170 13 C -0.172 4.172 14 C 0.060 3.940 15 H 0.083 0.917 16 N -0.314 5.314 17 C 0.018 3.982 18 C -0.383 4.383 19 H 0.086 0.914 20 C -0.196 4.196 21 N -0.554 5.554 22 Si 0.736 3.264 23 H -0.215 1.215 24 H -0.218 1.218 25 H -0.205 1.205 26 C -0.027 4.027 27 C -0.032 4.032 28 C -0.166 4.166 29 H 0.122 0.878 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.178 0.822 33 H 0.182 0.818 34 H 0.090 0.910 35 H 0.097 0.903 36 H 0.088 0.912 37 H 0.082 0.918 38 H 0.077 0.923 39 H 0.086 0.914 40 H 0.046 0.954 41 H 0.066 0.934 42 H 0.015 0.985 43 H 0.062 0.938 44 H 0.110 0.890 45 H 0.085 0.915 46 H 0.102 0.898 47 H 0.096 0.904 48 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -24.246 -3.307 -4.390 24.861 hybrid contribution 0.978 -1.020 0.193 1.426 sum -23.268 -4.327 -4.197 24.036 Atomic orbital electron populations 1.23147 0.77941 1.04509 1.01578 1.86105 1.21551 1.25553 1.88553 1.19719 0.92197 0.86059 0.99807 1.23021 1.00615 0.87086 1.01748 1.67548 1.11762 1.25928 1.11140 1.22886 0.88429 0.98250 0.96495 1.20820 0.95246 0.93796 1.04458 1.17952 0.86202 0.79707 0.81385 1.90810 1.64821 1.44925 1.39732 1.48119 1.09759 1.43875 1.31038 1.21953 0.94898 0.97297 0.87935 1.21926 0.97621 1.01939 0.95545 1.22124 0.92920 1.00554 1.01579 1.20486 0.85058 0.97705 0.90752 0.91718 1.43888 0.98970 1.07809 1.80776 1.20797 0.95939 0.84248 0.97199 1.19248 0.91952 0.88669 1.38446 0.91363 1.25013 0.98888 0.96526 0.99138 1.70065 1.21986 1.15884 1.47450 0.86229 0.82246 0.80660 0.77259 1.21465 1.21774 1.20490 1.22410 0.76833 1.01774 1.01654 1.19739 0.90865 0.95634 0.96987 1.20724 0.98895 0.93265 1.03667 0.87772 0.92318 0.92358 0.82188 0.81811 0.91026 0.90255 0.91153 0.91812 0.92346 0.91399 0.95429 0.93429 0.98477 0.93771 0.88975 0.91452 0.89806 0.90393 0.90723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.11 9.82 101.05 0.99 1.10 16 2 O -0.31 -2.82 9.73 -19.51 -0.19 -3.01 16 3 C 0.07 0.75 6.68 -39.13 -0.26 0.48 16 4 C 0.03 0.32 10.21 -17.30 -0.18 0.14 16 5 N -0.45 -5.15 10.34 -12.80 -0.13 -5.29 16 6 C 0.10 1.13 8.72 -17.14 -0.15 0.98 16 7 C -0.14 -1.81 4.85 -104.84 -0.51 -2.32 16 8 C 0.56 8.83 6.40 -12.32 -0.08 8.75 16 9 O -0.53 -10.04 15.09 5.32 0.08 -9.96 16 10 N -0.60 -8.94 2.98 -174.14 -0.52 -9.46 16 11 C 0.10 1.23 5.25 -3.71 -0.02 1.21 16 12 C -0.13 -1.72 6.08 -26.61 -0.16 -1.88 16 13 C -0.13 -2.26 5.15 -26.69 -0.14 -2.40 16 14 C 0.17 3.39 2.73 -68.03 -0.19 3.21 16 15 H 0.06 1.38 7.86 -51.93 -0.41 0.97 16 16 N -0.59 -14.55 2.82 -173.60 -0.49 -15.04 16 17 C 0.16 3.91 8.03 59.84 0.48 4.39 16 18 C -0.25 -6.95 9.60 -15.06 -0.14 -7.09 16 19 H 0.07 1.86 7.81 -52.49 -0.41 1.45 16 20 C 0.00 0.07 5.13 -17.43 -0.09 -0.02 16 21 N -0.91 -26.25 10.59 55.49 0.59 -25.66 16 22 Si 0.91 22.01 29.57 -169.99 -5.03 16.98 16 23 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 24 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 25 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 26 C 0.10 1.73 5.78 -3.93 -0.02 1.71 16 27 C -0.02 -0.29 5.96 -103.75 -0.62 -0.91 16 28 C -0.11 -1.34 8.97 36.01 0.32 -1.02 16 29 H 0.10 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.06 0.22 7.67 -51.93 -0.40 -0.18 16 31 H 0.06 0.22 7.67 -51.93 -0.40 -0.18 16 32 H 0.16 1.05 6.30 -52.49 -0.33 0.72 16 33 H 0.16 1.62 7.30 -52.49 -0.38 1.24 16 34 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.08 0.85 5.12 -51.93 -0.27 0.58 16 36 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 37 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.06 1.00 7.72 -51.93 -0.40 0.60 16 39 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 40 H 0.03 0.71 7.48 -51.92 -0.39 0.32 16 41 H 0.05 1.25 7.11 -51.93 -0.37 0.88 16 42 H 0.00 -0.07 6.34 -51.93 -0.33 -0.40 16 43 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 44 H 0.09 1.88 7.00 -51.93 -0.36 1.51 16 45 H 0.07 1.19 6.47 -51.93 -0.34 0.85 16 46 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 47 H 0.08 1.09 6.66 -51.93 -0.35 0.75 16 48 H 0.07 0.80 7.72 -51.93 -0.40 0.40 16 LS Contribution 375.19 15.07 5.65 5.65 Total: -1.00 -32.27 375.19 -7.99 -40.26 By element: Atomic # 1 Polarization: 6.39 SS G_CDS: -7.20 Total: -0.81 kcal Atomic # 6 Polarization: 7.08 SS G_CDS: -0.76 Total: 6.32 kcal Atomic # 7 Polarization: -54.89 SS G_CDS: -0.55 Total: -55.44 kcal Atomic # 8 Polarization: -12.86 SS G_CDS: -0.11 Total: -12.97 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.03 Total: 16.98 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -32.27 -7.99 -40.26 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027462942.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.733 kcal (2) G-P(sol) polarization free energy of solvation -32.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds