Wall clock time and date at job start Tue Mar 31 2020 17:54:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35927 * 116.99911 * 2 1 4 4 C 1.38845 * 120.40154 * 359.97438 * 3 2 1 5 5 N 1.31892 * 120.99475 * 179.97438 * 4 3 2 6 6 C 1.31671 * 121.94406 * 0.02562 * 5 4 3 7 7 C 1.39527 * 120.69189 * 0.26990 * 6 5 4 8 8 C 1.47854 * 120.53259 * 179.69956 * 7 6 5 9 9 O 1.21550 * 120.00083 * 227.93153 * 8 7 6 10 10 N 1.34780 * 119.99795 * 47.93563 * 8 7 6 11 11 C 1.46922 * 120.63002 * 5.78901 * 10 8 7 12 12 C 1.53195 * 108.77424 * 126.37264 * 11 10 8 13 13 C 1.53035 * 109.31104 * 54.63591 * 12 11 10 14 14 C 1.53040 * 109.53709 * 298.63214 * 13 12 11 15 15 H 1.09000 * 109.50309 * 301.38256 * 14 13 12 16 16 N 1.46506 * 109.49600 * 181.31758 * 14 13 12 17 17 C 1.46494 * 120.00152 * 299.99983 * 16 14 13 18 18 C 1.36940 * 119.99872 * 120.00489 * 16 14 13 19 19 H 1.07999 * 119.99904 * 22.73939 * 18 16 14 20 20 C 1.38809 * 119.99832 * 202.74352 * 18 16 14 21 21 N 1.31616 * 120.00141 * 10.80859 * 20 18 16 22 22 Si 1.86802 * 120.00158 * 190.80294 * 20 18 16 23 23 H 1.48493 * 109.46856 * 90.00135 * 22 20 18 24 24 H 1.48497 * 109.47295 * 210.00317 * 22 20 18 25 25 H 1.48508 * 109.46718 * 330.00354 * 22 20 18 26 26 C 1.46927 * 120.62833 * 185.51371 * 10 8 7 27 27 C 1.38841 * 120.40536 * 179.97438 * 3 2 1 28 28 C 1.50705 * 120.88138 * 0.03568 * 27 3 2 29 29 H 1.09005 * 109.46870 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47456 * 299.99905 * 1 2 3 31 31 H 1.09006 * 109.46964 * 60.00463 * 1 2 3 32 32 H 1.07995 * 119.50400 * 0.02562 * 4 3 2 33 33 H 1.07997 * 119.65678 * 180.02562 * 6 5 4 34 34 H 1.08998 * 109.59072 * 246.16039 * 11 10 8 35 35 H 1.09003 * 109.58693 * 6.44238 * 11 10 8 36 36 H 1.08997 * 109.49781 * 174.59093 * 12 11 10 37 37 H 1.09002 * 109.49426 * 294.68281 * 12 11 10 38 38 H 1.08995 * 109.46471 * 58.65822 * 13 12 11 39 39 H 1.09004 * 109.46258 * 178.61669 * 13 12 11 40 40 H 1.09007 * 109.46831 * 92.98397 * 17 16 14 41 41 H 1.08995 * 109.47647 * 212.98245 * 17 16 14 42 42 H 1.09004 * 109.47342 * 332.98991 * 17 16 14 43 43 H 0.97004 * 120.00074 * 179.97438 * 21 20 18 44 44 H 1.08996 * 109.58870 * 353.41581 * 26 10 8 45 45 H 1.08999 * 109.58594 * 113.84240 * 26 10 8 46 46 H 1.09003 * 109.46499 * 86.70746 * 28 27 3 47 47 H 1.08998 * 109.47539 * 206.70777 * 28 27 3 48 48 H 1.09004 * 109.47076 * 326.71522 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2111 0.0000 4 6 1.2980 2.3808 -0.0005 5 7 1.8845 3.5621 0.0000 6 6 3.1951 3.6892 0.0005 7 6 4.0198 2.5637 -0.0051 8 6 5.4910 2.7106 -0.0112 9 8 6.1624 2.0705 -0.7967 10 7 6.0876 3.5540 0.8543 11 6 5.3050 4.2384 1.8925 12 6 5.9504 3.9676 3.2553 13 6 7.4243 4.3764 3.2074 14 6 8.1534 3.5404 2.1530 15 1 8.0576 2.4825 2.3974 16 7 9.5707 3.9104 2.1298 17 6 9.9632 5.2879 1.8221 18 6 10.5287 2.9687 2.3958 19 1 10.3071 1.9202 2.2616 20 6 11.7844 3.3617 2.8379 21 7 11.9925 4.6085 3.2047 22 14 13.1790 2.1211 2.9124 23 1 13.9087 2.1186 1.6191 24 1 14.1123 2.4906 4.0066 25 1 12.6243 0.7679 3.1706 26 6 7.5339 3.8020 0.7813 27 6 3.4320 1.2936 0.0005 28 6 4.2810 0.0485 0.0003 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8901 32 1 0.2196 2.3225 -0.0005 33 1 3.6364 4.6749 0.0013 34 1 5.2985 5.3108 1.6980 35 1 4.2827 3.8601 1.8884 36 1 5.4369 4.5469 4.0226 37 1 5.8748 2.9056 3.4890 38 1 7.5001 5.4327 2.9493 39 1 7.8800 4.2077 4.1831 40 1 10.0667 5.8519 2.7491 41 1 10.9148 5.2845 1.2907 42 1 9.1999 5.7523 1.1976 43 1 12.8700 4.8831 3.5140 44 1 7.9825 3.1342 0.0460 45 1 7.7130 4.8381 0.4943 46 1 4.4372 -0.2845 -1.0258 47 1 5.2440 0.2652 0.4626 48 1 3.7757 -0.7359 0.5638 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027462942.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:54:54 Heat of formation + Delta-G solvation = -25.234296 kcal Electronic energy + Delta-G solvation = -29556.691475 eV Core-core repulsion = 25612.288073 eV Total energy + Delta-G solvation = -3944.403402 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.25408 -40.95979 -39.21442 -38.74342 -36.83208 -34.90025 -34.08394 -32.91643 -32.02404 -30.28951 -28.97871 -28.48514 -28.05229 -26.72025 -25.40276 -24.40203 -23.45751 -23.03488 -21.34290 -20.17905 -19.16445 -18.72040 -18.58112 -17.60369 -17.36913 -17.09990 -16.96360 -16.75969 -16.14592 -15.74287 -15.41859 -15.23973 -15.02133 -14.86674 -14.78565 -14.48465 -14.20313 -13.97775 -13.88540 -13.75262 -13.68805 -13.66881 -12.97678 -12.86314 -12.83644 -12.74284 -12.51292 -12.35695 -12.29485 -12.11755 -11.95113 -11.80604 -11.75001 -11.41478 -11.36612 -10.67834 -10.60534 -10.44472 -9.77689 -9.49818 -8.76510 -7.84292 -5.32476 -0.40634 0.07554 1.43532 1.45831 1.46967 1.54235 1.79753 2.24021 2.49777 2.57698 3.22420 3.29229 3.41069 3.47994 3.57624 3.61063 3.88342 3.98738 4.05000 4.08005 4.14911 4.21944 4.35022 4.38207 4.43308 4.46285 4.57180 4.60146 4.62095 4.67984 4.77030 4.79995 4.83849 4.91287 4.97076 5.02378 5.06029 5.12454 5.29394 5.31266 5.39917 5.47860 5.49173 5.63220 5.74386 6.15350 6.29376 6.32610 6.72053 6.97619 7.14666 7.85598 8.27591 9.18395 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.021055 B = 0.002811 C = 0.002640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1329.541658 B = 9957.895670 C =10605.053018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.320 6.320 3 C 0.075 3.925 4 C 0.044 3.956 5 N -0.461 5.461 6 C 0.102 3.898 7 C -0.151 4.151 8 C 0.562 3.438 9 O -0.570 6.570 10 N -0.593 5.593 11 C 0.102 3.898 12 C -0.122 4.122 13 C -0.121 4.121 14 C 0.168 3.832 15 H 0.042 0.958 16 N -0.609 5.609 17 C 0.180 3.820 18 C -0.264 4.264 19 H 0.061 0.939 20 C -0.048 4.048 21 N -0.934 5.934 22 Si 0.966 3.034 23 H -0.287 1.287 24 H -0.291 1.291 25 H -0.273 1.273 26 C 0.113 3.887 27 C -0.043 4.043 28 C -0.103 4.103 29 H 0.122 0.878 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.196 0.804 33 H 0.181 0.819 34 H 0.098 0.902 35 H 0.101 0.899 36 H 0.104 0.896 37 H 0.056 0.944 38 H 0.063 0.937 39 H 0.042 0.958 40 H 0.006 0.994 41 H 0.016 0.984 42 H 0.031 0.969 43 H 0.249 0.751 44 H 0.061 0.939 45 H 0.076 0.924 46 H 0.077 0.923 47 H 0.052 0.948 48 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.990 -3.314 -3.870 28.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.232 6.232 3 C 0.027 3.973 4 C -0.114 4.114 5 N -0.170 5.170 6 C -0.057 4.057 7 C -0.156 4.156 8 C 0.350 3.650 9 O -0.450 6.450 10 N -0.325 5.325 11 C -0.020 4.020 12 C -0.161 4.161 13 C -0.161 4.161 14 C 0.060 3.940 15 H 0.060 0.940 16 N -0.332 5.332 17 C 0.035 3.965 18 C -0.395 4.395 19 H 0.079 0.921 20 C -0.243 4.243 21 N -0.581 5.581 22 Si 0.795 3.205 23 H -0.214 1.214 24 H -0.217 1.217 25 H -0.197 1.197 26 C -0.011 4.011 27 C -0.052 4.052 28 C -0.159 4.159 29 H 0.140 0.860 30 H 0.093 0.907 31 H 0.090 0.910 32 H 0.213 0.787 33 H 0.198 0.802 34 H 0.116 0.884 35 H 0.119 0.881 36 H 0.122 0.878 37 H 0.075 0.925 38 H 0.082 0.918 39 H 0.061 0.939 40 H 0.025 0.975 41 H 0.035 0.965 42 H 0.050 0.950 43 H 0.058 0.942 44 H 0.080 0.920 45 H 0.094 0.906 46 H 0.096 0.904 47 H 0.071 0.929 48 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -27.919 -3.038 -4.212 28.398 hybrid contribution 1.929 -1.200 0.114 2.275 sum -25.990 -4.237 -4.098 26.650 Atomic orbital electron populations 1.23519 0.75475 1.06312 1.02982 1.86103 1.24060 1.24874 1.88160 1.19689 0.91453 0.87107 0.99035 1.23576 1.02145 0.86148 0.99494 1.67655 1.11358 1.26571 1.11419 1.23061 0.88466 0.98217 0.95914 1.20570 0.93306 0.94882 1.06850 1.18386 0.87388 0.78677 0.80535 1.90782 1.66127 1.46558 1.41530 1.48125 1.08543 1.44035 1.31790 1.22211 0.95161 0.98587 0.85992 1.21877 0.94757 1.02045 0.97393 1.21928 0.95287 1.00102 0.98776 1.20598 0.83405 0.97024 0.92943 0.93973 1.44077 1.00536 1.07509 1.81102 1.20517 0.95589 0.84124 0.96258 1.19477 0.93082 0.89054 1.37846 0.92084 1.25707 1.00944 0.98244 0.99448 1.70210 1.22111 1.17291 1.48481 0.85281 0.79383 0.78907 0.76959 1.21393 1.21713 1.19749 1.21922 0.78784 1.01268 0.99151 1.19837 0.92119 0.95219 0.98047 1.20613 0.97950 0.94121 1.03226 0.86014 0.90742 0.90976 0.78702 0.80232 0.88416 0.88112 0.87788 0.92514 0.91791 0.93873 0.97549 0.96468 0.95022 0.94183 0.92045 0.90628 0.90440 0.92894 0.89341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.07 9.82 113.37 1.11 1.18 16 2 O -0.32 -5.06 9.73 -92.73 -0.90 -5.96 16 3 C 0.08 1.42 6.68 22.56 0.15 1.57 16 4 C 0.04 0.69 10.21 84.83 0.87 1.56 16 5 N -0.46 -8.83 10.34 -194.40 -2.01 -10.84 16 6 C 0.10 2.07 8.72 85.03 0.74 2.81 16 7 C -0.15 -3.79 4.85 -20.01 -0.10 -3.89 16 8 C 0.56 17.76 6.40 86.79 0.56 18.31 16 9 O -0.57 -22.72 15.09 -3.87 -0.06 -22.78 16 10 N -0.59 -17.43 2.98 -823.14 -2.45 -19.88 16 11 C 0.10 2.16 5.25 86.36 0.45 2.61 16 12 C -0.12 -2.92 6.08 30.67 0.19 -2.73 16 13 C -0.12 -4.09 5.15 30.62 0.16 -3.93 16 14 C 0.17 6.89 2.73 44.92 0.12 7.01 16 15 H 0.04 1.89 7.86 -2.39 -0.02 1.87 16 16 N -0.61 -30.85 2.82 -703.15 -1.98 -32.83 16 17 C 0.18 8.83 8.03 127.77 1.03 9.85 16 18 C -0.26 -14.98 9.60 84.03 0.81 -14.17 16 19 H 0.06 3.46 7.81 -2.91 -0.02 3.44 16 20 C -0.05 -2.75 5.13 84.86 0.44 -2.31 16 21 N -0.93 -55.47 10.59 21.65 0.23 -55.24 16 22 Si 0.97 46.31 29.57 68.60 2.03 48.34 16 23 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 24 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 25 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 26 C 0.11 4.11 5.78 86.22 0.50 4.61 16 27 C -0.04 -1.05 5.96 -19.30 -0.12 -1.16 16 28 C -0.10 -2.58 8.97 71.24 0.64 -1.94 16 29 H 0.12 0.31 8.14 -2.38 -0.02 0.29 16 30 H 0.07 0.24 7.67 -2.39 -0.02 0.22 16 31 H 0.07 0.26 7.67 -2.38 -0.02 0.24 16 32 H 0.20 1.58 6.30 -2.91 -0.02 1.57 16 33 H 0.18 2.96 7.30 -2.91 -0.02 2.94 16 34 H 0.10 1.65 8.14 -2.39 -0.02 1.64 16 35 H 0.10 1.80 5.12 -2.39 -0.01 1.79 16 36 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 37 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 38 H 0.06 2.09 7.72 -2.39 -0.02 2.07 16 39 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 40 H 0.01 0.33 7.48 -2.38 -0.02 0.31 16 41 H 0.02 0.91 7.11 -2.39 -0.02 0.89 16 42 H 0.03 1.30 6.34 -2.38 -0.02 1.29 16 43 H 0.25 14.35 8.31 -92.71 -0.77 13.58 16 44 H 0.06 2.62 7.00 -2.39 -0.02 2.61 16 45 H 0.08 2.62 6.47 -2.39 -0.02 2.60 16 46 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 47 H 0.05 1.57 6.66 -2.39 -0.02 1.55 16 48 H 0.09 1.88 7.72 -2.38 -0.02 1.86 16 Total: -1.00 -73.47 375.19 3.37 -70.11 By element: Atomic # 1 Polarization: 8.73 SS G_CDS: 0.97 Total: 9.70 kcal Atomic # 6 Polarization: 11.84 SS G_CDS: 7.54 Total: 19.39 kcal Atomic # 7 Polarization: -112.58 SS G_CDS: -6.21 Total: -118.79 kcal Atomic # 8 Polarization: -27.78 SS G_CDS: -0.96 Total: -28.74 kcal Atomic # 14 Polarization: 46.31 SS G_CDS: 2.03 Total: 48.34 kcal Total: -73.47 3.37 -70.11 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027462942.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.874 kcal (2) G-P(sol) polarization free energy of solvation -73.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds