Wall clock time and date at job start Tue Mar 31 2020 17:34:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38354 * 119.40536 * 2 1 4 4 C 1.38337 * 119.45627 * 179.72678 * 3 2 1 5 5 C 1.50697 * 120.82371 * 180.27340 * 4 3 2 6 6 C 1.39992 * 118.34822 * 0.25327 * 4 3 2 7 7 C 1.47524 * 120.59391 * 179.97438 * 6 4 3 8 8 O 1.21584 * 119.99966 * 89.99946 * 7 6 4 9 9 N 1.34778 * 119.99909 * 269.99815 * 7 6 4 10 10 C 1.46932 * 120.63104 * 359.71964 * 9 7 6 11 11 C 1.52759 * 109.01008 * 233.58460 * 10 9 7 12 12 C 1.53040 * 109.38651 * 305.59169 * 11 10 9 13 13 C 1.53042 * 109.53826 * 61.23279 * 12 11 10 14 14 H 1.09005 * 109.52107 * 58.61045 * 13 12 11 15 15 N 1.46499 * 109.49761 * 178.68480 * 13 12 11 16 16 C 1.46503 * 119.99949 * 59.84428 * 15 13 12 17 17 C 1.36942 * 120.00097 * 239.84574 * 15 13 12 18 18 H 1.08003 * 119.99921 * 324.53311 * 17 15 13 19 19 C 1.38814 * 120.00129 * 144.54283 * 17 15 13 20 20 N 1.31610 * 120.00116 * 157.65432 * 19 17 15 21 21 Si 1.86800 * 119.99748 * 337.65322 * 19 17 15 22 22 H 1.48499 * 109.47199 * 95.56683 * 21 19 17 23 23 H 1.48503 * 109.47278 * 215.56732 * 21 19 17 24 24 H 1.48496 * 109.47316 * 335.56821 * 21 19 17 25 25 C 1.46922 * 120.63027 * 180.02562 * 9 7 6 26 26 C 1.40276 * 118.80561 * 359.97438 * 6 4 3 27 27 O 1.35429 * 119.80186 * 179.97438 * 26 6 4 28 28 N 1.31884 * 119.40829 * 180.27436 * 2 1 3 29 29 H 1.09002 * 109.46967 * 89.99936 * 1 2 3 30 30 H 1.08994 * 109.47187 * 210.00276 * 1 2 3 31 31 H 1.09005 * 109.47282 * 330.00009 * 1 2 3 32 32 H 1.07994 * 120.27184 * 359.97438 * 3 2 1 33 33 H 1.09002 * 109.47222 * 90.00221 * 5 4 3 34 34 H 1.09001 * 109.47240 * 209.99981 * 5 4 3 35 35 H 1.08996 * 109.47487 * 329.99912 * 5 4 3 36 36 H 1.08994 * 109.58492 * 353.42266 * 10 9 7 37 37 H 1.09004 * 109.58283 * 113.84759 * 10 9 7 38 38 H 1.08999 * 109.56739 * 185.55526 * 11 10 9 39 39 H 1.09006 * 109.38441 * 65.51248 * 11 10 9 40 40 H 1.09002 * 109.45832 * 301.22188 * 12 11 10 41 41 H 1.08991 * 109.46596 * 181.26020 * 12 11 10 42 42 H 1.08998 * 109.47256 * 87.95002 * 16 15 13 43 43 H 1.08997 * 109.46759 * 207.95065 * 16 15 13 44 44 H 1.08999 * 109.46821 * 327.95263 * 16 15 13 45 45 H 0.97002 * 120.00250 * 179.97438 * 20 19 17 46 46 H 1.09006 * 109.58927 * 246.15123 * 25 9 7 47 47 H 1.08997 * 109.58888 * 6.57595 * 25 9 7 48 48 H 0.96703 * 113.99876 * 89.99468 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1863 1.2053 0.0000 4 6 3.5697 1.2065 0.0057 5 6 4.3407 2.5013 0.0121 6 6 4.2355 -0.0249 0.0059 7 6 5.7097 -0.0814 0.0114 8 8 6.3132 -0.1066 1.0666 9 7 6.3874 -0.1051 -1.1533 10 6 5.6719 -0.0813 -2.4365 11 6 6.1383 -1.2605 -3.2882 12 6 7.6628 -1.2224 -3.4174 13 6 8.2973 -1.3453 -2.0301 14 1 7.9761 -2.2768 -1.5639 15 7 9.7567 -1.3402 -2.1577 16 6 10.4354 -0.1896 -2.7593 17 6 10.4865 -2.4109 -1.7147 18 1 10.1743 -2.9491 -0.8319 19 6 11.6275 -2.8045 -2.4003 20 7 12.5560 -3.5056 -1.7849 21 14 11.8452 -2.3392 -4.1962 22 1 12.6592 -1.1009 -4.2916 23 1 12.5352 -3.4416 -4.9132 24 1 10.5142 -2.1052 -4.8118 25 6 7.8555 -0.1618 -1.1641 26 6 3.4758 -1.2041 0.0009 27 8 4.0991 -2.4064 0.0005 28 7 2.1546 -1.1489 -0.0055 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3633 -0.8899 0.5138 31 1 -0.3634 0.8900 0.5138 32 1 1.6411 2.1375 -0.0004 33 1 4.5224 2.8110 1.0413 34 1 5.2934 2.3594 -0.4981 35 1 3.7641 3.2701 -0.5023 36 1 4.5997 -0.1624 -2.2584 37 1 5.8884 0.8509 -2.9583 38 1 5.6876 -1.1964 -4.2785 39 1 5.8370 -2.1931 -2.8109 40 1 7.9651 -0.2792 -3.8725 41 1 7.9951 -2.0504 -4.0434 42 1 10.6507 0.5495 -1.9876 43 1 11.3678 -0.5174 -3.2188 44 1 9.7925 0.2550 -3.5189 45 1 13.3532 -3.7809 -2.2641 46 1 8.2540 0.7636 -1.5800 47 1 8.2235 -0.2960 -0.1470 48 1 4.2772 -2.7574 0.8838 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027514642.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:34:02 Heat of formation + Delta-G solvation = -38.282414 kcal Electronic energy + Delta-G solvation = -30032.964265 eV Core-core repulsion = 26087.995054 eV Total energy + Delta-G solvation = -3944.969211 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.22422 -40.75082 -39.01665 -38.43912 -36.92903 -35.30679 -34.08128 -33.18708 -32.79971 -31.19989 -29.44873 -28.47932 -28.08354 -26.44477 -25.54131 -24.26253 -23.19772 -22.65164 -21.27483 -20.23803 -19.52424 -18.97190 -18.58844 -18.28300 -17.57957 -17.23387 -16.69830 -16.21972 -15.68735 -15.58936 -15.38864 -15.30092 -15.15361 -14.82891 -14.46408 -14.26083 -14.21005 -14.15680 -13.99389 -13.93765 -13.85269 -13.74405 -13.22569 -13.02341 -12.90030 -12.84449 -12.63427 -12.62153 -12.22583 -12.09940 -11.93017 -11.89293 -11.71898 -11.40365 -11.36734 -10.71449 -10.62471 -10.47257 -9.83917 -9.83337 -8.82213 -8.22951 -5.61303 -0.30490 0.02740 1.29364 1.32127 1.41072 1.53303 1.83569 2.27073 2.39914 2.63797 3.02908 3.21238 3.28910 3.53279 3.55512 3.88963 3.91105 3.97477 4.01088 4.09406 4.19402 4.28154 4.29865 4.47638 4.49898 4.51658 4.58633 4.60109 4.63878 4.73166 4.78048 4.82039 4.83847 4.95402 4.96739 4.97196 5.02548 5.06636 5.13480 5.19745 5.33564 5.38256 5.41229 5.52600 5.87675 6.11493 6.24952 6.37220 6.80427 6.90141 6.96198 7.57565 7.96629 8.97324 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.022693 B = 0.003088 C = 0.003056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.538606 B = 9063.912704 C = 9160.437657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.160 3.840 3 C -0.171 4.171 4 C 0.007 3.993 5 C -0.122 4.122 6 C -0.213 4.213 7 C 0.575 3.425 8 O -0.582 6.582 9 N -0.591 5.591 10 C 0.114 3.886 11 C -0.123 4.123 12 C -0.127 4.127 13 C 0.168 3.832 14 H 0.039 0.961 15 N -0.615 5.615 16 C 0.105 3.895 17 C -0.264 4.264 18 H 0.031 0.969 19 C -0.026 4.026 20 N -0.953 5.953 21 Si 0.959 3.041 22 H -0.271 1.271 23 H -0.311 1.311 24 H -0.250 1.250 25 C 0.114 3.886 26 C 0.339 3.661 27 O -0.493 6.493 28 N -0.528 5.528 29 H 0.097 0.903 30 H 0.073 0.927 31 H 0.109 0.891 32 H 0.187 0.813 33 H 0.085 0.915 34 H 0.057 0.943 35 H 0.116 0.884 36 H 0.085 0.915 37 H 0.099 0.901 38 H 0.105 0.895 39 H 0.050 0.950 40 H 0.078 0.922 41 H 0.050 0.950 42 H 0.025 0.975 43 H 0.029 0.971 44 H 0.071 0.929 45 H 0.264 0.736 46 H 0.083 0.917 47 H 0.056 0.944 48 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.743 16.052 -2.401 32.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.022 3.978 3 C -0.190 4.190 4 C -0.001 4.001 5 C -0.178 4.178 6 C -0.219 4.219 7 C 0.363 3.637 8 O -0.462 6.462 9 N -0.322 5.322 10 C -0.008 4.008 11 C -0.162 4.162 12 C -0.166 4.166 13 C 0.060 3.940 14 H 0.057 0.943 15 N -0.339 5.339 16 C -0.039 4.039 17 C -0.394 4.394 18 H 0.048 0.952 19 C -0.222 4.222 20 N -0.597 5.597 21 Si 0.787 3.213 22 H -0.198 1.198 23 H -0.240 1.240 24 H -0.174 1.174 25 C -0.010 4.010 26 C 0.160 3.840 27 O -0.303 6.303 28 N -0.249 5.249 29 H 0.115 0.885 30 H 0.092 0.908 31 H 0.127 0.873 32 H 0.204 0.796 33 H 0.103 0.897 34 H 0.076 0.924 35 H 0.134 0.866 36 H 0.103 0.897 37 H 0.117 0.883 38 H 0.123 0.877 39 H 0.068 0.932 40 H 0.097 0.903 41 H 0.069 0.931 42 H 0.043 0.957 43 H 0.047 0.953 44 H 0.089 0.911 45 H 0.073 0.927 46 H 0.101 0.899 47 H 0.075 0.925 48 H 0.277 0.723 Dipole moment (debyes) X Y Z Total from point charges -27.692 15.211 -2.474 31.691 hybrid contribution 1.743 -0.408 0.293 1.814 sum -25.949 14.803 -2.182 29.954 Atomic orbital electron populations 1.20932 0.85448 1.05013 1.04718 1.21925 0.98706 0.86730 0.90418 1.22174 0.92585 1.00884 1.03358 1.20573 0.94751 0.93640 0.91148 1.20992 0.99739 0.93016 1.04041 1.20722 0.93077 0.95549 1.12597 1.18242 0.87115 0.75042 0.83279 1.90788 1.70714 1.52351 1.32338 1.48153 1.06683 1.70827 1.06506 1.21815 0.96391 1.00037 0.82528 1.21777 0.94982 0.98141 1.01257 1.21983 0.95228 1.02398 0.97005 1.20743 0.82564 0.95750 0.94894 0.94257 1.44090 1.01324 1.16221 1.72232 1.21448 0.96305 0.89279 0.96818 1.18632 1.06685 1.08220 1.05858 0.95152 1.26127 0.96278 0.97572 1.02238 1.70016 1.08817 1.43065 1.37765 0.85648 0.78664 0.75923 0.81034 1.19813 1.24042 1.17411 1.21960 0.78503 0.99727 1.00833 1.19113 0.86840 0.84347 0.93735 1.84657 1.76961 1.33177 1.35473 1.67127 1.08511 1.32186 1.17047 0.88487 0.90835 0.87260 0.79554 0.89677 0.92393 0.86555 0.89711 0.88341 0.87704 0.93151 0.90333 0.93101 0.95702 0.95277 0.91093 0.92692 0.89857 0.92536 0.72339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.81 10.16 71.24 0.72 -0.09 16 2 C 0.16 2.53 6.78 42.58 0.29 2.82 16 3 C -0.17 -2.13 9.41 22.32 0.21 -1.92 16 4 C 0.01 0.12 5.95 -19.42 -0.12 0.01 16 5 C -0.12 -1.70 9.69 71.23 0.69 -1.01 16 6 C -0.21 -5.48 3.66 -19.91 -0.07 -5.55 16 7 C 0.58 18.69 5.30 86.69 0.46 19.15 16 8 O -0.58 -24.00 16.52 -3.98 -0.07 -24.07 16 9 N -0.59 -17.80 2.98 -823.59 -2.45 -20.25 16 10 C 0.11 2.56 6.31 86.22 0.54 3.10 16 11 C -0.12 -3.05 6.06 30.53 0.19 -2.87 16 12 C -0.13 -4.02 5.11 30.62 0.16 -3.87 16 13 C 0.17 6.77 2.74 45.06 0.12 6.89 16 14 H 0.04 1.84 7.89 -2.38 -0.02 1.82 16 15 N -0.61 -29.46 2.41 -702.40 -1.70 -31.16 16 16 C 0.11 4.33 8.44 127.77 1.08 5.41 16 17 C -0.26 -15.67 9.85 84.03 0.83 -14.85 16 18 H 0.03 2.05 8.06 -2.91 -0.02 2.03 16 19 C -0.03 -1.56 5.31 84.86 0.45 -1.11 16 20 N -0.95 -61.39 13.97 21.65 0.30 -61.09 16 21 Si 0.96 46.52 24.94 68.60 1.71 48.23 16 22 H -0.27 -12.35 6.67 99.48 0.66 -11.68 16 23 H -0.31 -15.40 7.11 99.48 0.71 -14.69 16 24 H -0.25 -11.25 7.11 99.48 0.71 -10.55 16 25 C 0.11 4.10 5.79 86.35 0.50 4.60 16 26 C 0.34 9.01 7.62 85.13 0.65 9.66 16 27 O -0.49 -13.97 13.02 -87.24 -1.14 -15.10 16 28 N -0.53 -12.43 10.28 -296.06 -3.04 -15.48 16 29 H 0.10 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.11 0.22 8.07 -2.38 -0.02 0.20 16 32 H 0.19 0.68 8.06 -2.91 -0.02 0.66 16 33 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.06 1.03 7.19 -2.39 -0.02 1.01 16 35 H 0.12 0.76 8.10 -2.39 -0.02 0.74 16 36 H 0.08 1.79 6.22 -2.39 -0.01 1.78 16 37 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 38 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 39 H 0.05 1.47 8.14 -2.38 -0.02 1.45 16 40 H 0.08 2.17 6.72 -2.39 -0.02 2.15 16 41 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 42 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 43 H 0.03 1.30 3.08 -2.39 -0.01 1.30 16 44 H 0.07 2.35 6.45 -2.39 -0.02 2.34 16 45 H 0.26 16.00 8.31 -92.71 -0.77 15.23 16 46 H 0.08 2.66 7.51 -2.38 -0.02 2.64 16 47 H 0.06 2.46 7.00 -2.39 -0.02 2.44 16 48 H 0.42 9.14 9.06 -74.05 -0.67 8.47 16 Total: -1.00 -83.02 380.07 0.59 -82.43 By element: Atomic # 1 Polarization: 15.83 SS G_CDS: 0.27 Total: 16.10 kcal Atomic # 6 Polarization: 13.68 SS G_CDS: 6.70 Total: 20.38 kcal Atomic # 7 Polarization: -121.09 SS G_CDS: -6.89 Total: -127.98 kcal Atomic # 8 Polarization: -37.97 SS G_CDS: -1.20 Total: -39.17 kcal Atomic # 14 Polarization: 46.52 SS G_CDS: 1.71 Total: 48.23 kcal Total: -83.02 0.59 -82.43 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027514642.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.150 kcal (2) G-P(sol) polarization free energy of solvation -83.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds