Wall clock time and date at job start Tue Mar 31 2020 17:33:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.37998 * 120.82007 * 2 1 4 4 C 1.39122 * 119.26482 * 180.02562 * 3 2 1 5 5 O 1.35501 * 119.52340 * 179.97438 * 4 3 2 6 6 N 1.32438 * 120.95000 * 359.74583 * 4 3 2 7 7 C 1.31641 * 121.79772 * 0.51806 * 6 4 3 8 8 C 1.50695 * 119.68517 * 179.75652 * 7 6 4 9 9 C 1.39561 * 120.62750 * 359.48470 * 7 6 4 10 10 C 1.47610 * 120.50234 * 180.22999 * 9 7 6 11 11 O 1.21585 * 119.99865 * 89.99828 * 10 9 7 12 12 N 1.34774 * 120.00081 * 270.00445 * 10 9 7 13 13 C 1.46925 * 120.63236 * 359.71241 * 12 10 9 14 14 C 1.52761 * 109.00984 * 233.59222 * 13 12 10 15 15 C 1.53040 * 109.38100 * 305.58232 * 14 13 12 16 16 C 1.53038 * 109.53708 * 61.24216 * 15 14 13 17 17 H 1.09007 * 109.49822 * 58.58483 * 16 15 14 18 18 N 1.46497 * 109.50103 * 178.67866 * 16 15 14 19 19 C 1.46505 * 119.99441 * 59.84319 * 18 16 15 20 20 C 1.36931 * 120.00284 * 239.84002 * 18 16 15 21 21 H 1.08000 * 119.99955 * 23.01241 * 20 18 16 22 22 C 1.38822 * 119.99907 * 203.00961 * 20 18 16 23 23 N 1.31613 * 119.99837 * 11.64095 * 22 20 18 24 24 Si 1.86800 * 119.99706 * 191.64348 * 22 20 18 25 25 H 1.48499 * 109.47218 * 60.00336 * 24 22 20 26 26 H 1.48501 * 109.46721 * 179.97438 * 24 22 20 27 27 H 1.48491 * 109.47257 * 299.99993 * 24 22 20 28 28 C 1.46931 * 120.63072 * 179.97438 * 12 10 9 29 29 H 1.08995 * 109.47135 * 269.98229 * 1 2 3 30 30 H 1.09003 * 109.46898 * 29.98364 * 1 2 3 31 31 H 1.09003 * 109.46749 * 149.97907 * 1 2 3 32 32 H 1.07997 * 120.36349 * 359.97438 * 3 2 1 33 33 H 0.96705 * 113.99730 * 90.00593 * 5 4 3 34 34 H 1.09003 * 109.47420 * 269.73031 * 8 7 6 35 35 H 1.09003 * 109.47331 * 29.72747 * 8 7 6 36 36 H 1.09000 * 109.47091 * 149.72584 * 8 7 6 37 37 H 1.09007 * 109.58332 * 353.42558 * 13 12 10 38 38 H 1.08997 * 109.59108 * 113.84260 * 13 12 10 39 39 H 1.09006 * 109.56335 * 185.55284 * 14 13 12 40 40 H 1.08999 * 109.36124 * 65.50012 * 14 13 12 41 41 H 1.09003 * 109.46361 * 301.22444 * 15 14 13 42 42 H 1.09002 * 109.45885 * 181.26256 * 15 14 13 43 43 H 1.08996 * 109.47435 * 93.85332 * 19 18 16 44 44 H 1.09003 * 109.47042 * 213.85500 * 19 18 16 45 45 H 1.08995 * 109.47337 * 333.84749 * 19 18 16 46 46 H 0.97001 * 120.00094 * 180.02562 * 23 22 20 47 47 H 1.09000 * 109.58204 * 246.15335 * 28 12 10 48 48 H 1.08997 * 109.58719 * 6.43427 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2141 1.1851 0.0000 4 6 3.6048 1.1473 -0.0005 5 8 4.3042 2.3078 -0.0011 6 7 4.2548 -0.0065 0.0040 7 6 3.6205 -1.1600 -0.0010 8 6 4.4081 -2.4448 -0.0010 9 6 2.2256 -1.2044 -0.0005 10 6 1.5172 -2.4994 -0.0009 11 8 1.2259 -3.0333 1.0519 12 7 1.1934 -3.0900 -1.1683 13 6 1.5332 -2.4542 -2.4485 14 6 0.2694 -2.3417 -3.2992 15 6 -0.3761 -3.7226 -3.4347 16 6 -0.7687 -4.2423 -2.0498 17 1 -1.4588 -3.5412 -1.5803 18 7 -1.4150 -5.5502 -2.1833 19 6 -0.6879 -6.6679 -2.7904 20 6 -2.6985 -5.7280 -1.7406 21 1 -3.3589 -4.8790 -1.6439 22 6 -3.1509 -6.9998 -1.4162 23 7 -2.2964 -7.9954 -1.3118 24 14 -4.9723 -7.2978 -1.1281 25 1 -5.7312 -6.9495 -2.3561 26 1 -5.1936 -8.7290 -0.7993 27 1 -5.4399 -6.4523 -0.0006 28 6 0.4888 -4.3792 -1.1849 29 1 -0.3633 -0.0003 1.0276 30 1 -0.3633 0.8902 -0.5136 31 1 -0.3633 -0.8898 -0.5142 32 1 1.6935 2.1313 -0.0004 33 1 4.5077 2.6448 0.8822 34 1 4.5976 -2.7548 -1.0287 35 1 5.3570 -2.2894 0.5124 36 1 3.8394 -3.2196 0.5132 37 1 1.9389 -1.4590 -2.2659 38 1 2.2710 -3.0610 -2.9735 39 1 0.5275 -1.9621 -4.2879 40 1 -0.4304 -1.6585 -2.8180 41 1 0.3331 -4.4117 -3.8934 42 1 -1.2658 -3.6478 -4.0601 43 1 -0.2069 -7.2558 -2.0088 44 1 -1.3854 -7.2982 -3.3420 45 1 0.0694 -6.2811 -3.4723 46 1 -2.6125 -8.8841 -1.0855 47 1 1.1398 -5.1460 -1.6049 48 1 0.2077 -4.6551 -0.1686 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027688844.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:33:57 Heat of formation + Delta-G solvation = -16.703173 kcal Electronic energy + Delta-G solvation = -30015.500125 eV Core-core repulsion = 26071.466660 eV Total energy + Delta-G solvation = -3944.033465 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.23625 -39.64900 -37.74875 -37.11774 -35.12102 -34.52047 -32.56354 -31.81400 -31.30305 -28.97448 -28.28307 -27.87545 -26.02933 -25.32589 -23.84574 -23.16360 -21.71925 -21.54331 -20.07650 -18.88245 -18.57099 -17.52120 -17.30172 -16.75668 -16.11336 -15.89548 -15.11859 -14.57720 -14.45624 -14.34583 -14.18253 -13.91884 -13.67293 -13.59943 -13.48263 -13.23575 -13.09847 -12.68478 -12.57266 -12.45488 -12.39488 -12.26328 -12.10287 -11.89392 -11.85799 -11.21995 -11.05033 -10.80774 -10.66326 -10.43573 -10.39504 -10.24091 -10.10968 -9.86269 -9.79000 -9.75556 -9.55307 -8.96359 -8.61127 -8.38559 -6.77971 -5.74356 -3.21101 0.53738 0.88011 2.61910 3.02440 3.10916 3.38795 3.43810 3.44308 3.46380 4.19470 4.26916 4.42133 4.47638 4.76195 4.90054 4.93223 5.06797 5.11443 5.24023 5.24721 5.32524 5.36471 5.41240 5.42176 5.49276 5.56124 5.65853 5.71726 5.74087 5.85518 5.87973 5.95063 5.97084 6.08831 6.17701 6.19353 6.33498 6.45828 6.61972 6.74583 6.88928 6.93369 7.13878 7.36454 7.53257 7.61840 7.70197 7.79271 8.24463 8.38365 9.21425 9.83639 10.32233 11.30357 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.020813 B = 0.003029 C = 0.002976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.018304 B = 9242.532078 C = 9405.127867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.011 3.989 3 C -0.195 4.195 4 C 0.326 3.674 5 O -0.482 6.482 6 N -0.507 5.507 7 C 0.191 3.809 8 C -0.113 4.113 9 C -0.179 4.179 10 C 0.566 3.434 11 O -0.529 6.529 12 N -0.595 5.595 13 C 0.109 3.891 14 C -0.130 4.130 15 C -0.134 4.134 16 C 0.170 3.830 17 H 0.064 0.936 18 N -0.591 5.591 19 C 0.161 3.839 20 C -0.258 4.258 21 H 0.068 0.932 22 C 0.005 3.995 23 N -0.906 5.906 24 Si 0.906 3.094 25 H -0.284 1.284 26 H -0.290 1.290 27 H -0.283 1.283 28 C 0.097 3.903 29 H 0.086 0.914 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.145 0.855 33 H 0.402 0.598 34 H 0.086 0.914 35 H 0.084 0.916 36 H 0.082 0.918 37 H 0.073 0.927 38 H 0.069 0.931 39 H 0.070 0.930 40 H 0.063 0.937 41 H 0.060 0.940 42 H 0.065 0.935 43 H 0.029 0.971 44 H 0.045 0.955 45 H -0.001 1.001 46 H 0.254 0.746 47 H 0.064 0.936 48 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.561 17.946 -0.799 21.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.003 3.997 3 C -0.216 4.216 4 C 0.147 3.853 5 O -0.289 6.289 6 N -0.227 5.227 7 C 0.052 3.948 8 C -0.170 4.170 9 C -0.185 4.185 10 C 0.352 3.648 11 O -0.405 6.405 12 N -0.328 5.328 13 C -0.014 4.014 14 C -0.169 4.169 15 C -0.173 4.173 16 C 0.060 3.940 17 H 0.082 0.918 18 N -0.312 5.312 19 C 0.017 3.983 20 C -0.387 4.387 21 H 0.085 0.915 22 C -0.194 4.194 23 N -0.550 5.550 24 Si 0.736 3.264 25 H -0.211 1.211 26 H -0.216 1.216 27 H -0.209 1.209 28 C -0.026 4.026 29 H 0.105 0.895 30 H 0.098 0.902 31 H 0.098 0.902 32 H 0.163 0.837 33 H 0.260 0.740 34 H 0.104 0.896 35 H 0.103 0.897 36 H 0.101 0.899 37 H 0.091 0.909 38 H 0.087 0.913 39 H 0.089 0.911 40 H 0.082 0.918 41 H 0.079 0.921 42 H 0.084 0.916 43 H 0.047 0.953 44 H 0.063 0.937 45 H 0.017 0.983 46 H 0.064 0.936 47 H 0.082 0.918 48 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 12.211 17.433 -0.802 21.300 hybrid contribution -1.657 -0.021 0.624 1.771 sum 10.554 17.412 -0.178 20.362 Atomic orbital electron populations 1.20974 0.89150 1.04139 1.03963 1.20234 0.97095 0.90780 0.91585 1.21854 0.93689 0.99312 1.06794 1.19219 0.87026 0.85005 0.94005 1.84721 1.76022 1.34100 1.34053 1.66987 1.41859 0.97806 1.16007 1.21020 0.89173 0.93111 0.91456 1.20869 1.00490 0.91794 1.03827 1.20758 0.94870 0.94707 1.08128 1.17905 0.78881 0.83847 0.84160 1.90841 1.54159 1.64711 1.30828 1.48310 1.56854 1.22700 1.04963 1.21627 0.97656 0.97701 0.84449 1.21832 0.96723 0.99012 0.99334 1.22098 1.00504 0.94555 1.00150 1.20627 0.91902 0.89372 0.92070 0.91766 1.43917 1.12680 1.05842 1.68769 1.20800 0.93771 0.89057 0.94698 1.19167 0.87034 0.93448 1.39084 0.91456 1.25045 0.97911 0.96835 0.99608 1.70047 1.32328 1.00716 1.51930 0.86318 0.85032 0.76947 0.78128 1.21084 1.21612 1.20890 1.22656 0.94293 0.82027 1.03667 0.89505 0.90218 0.90206 0.83682 0.74012 0.89595 0.89695 0.89892 0.90852 0.91279 0.91136 0.91793 0.92141 0.91605 0.95316 0.93667 0.98251 0.93620 0.91753 0.88864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.29 9.69 36.01 0.35 -0.94 16 2 C 0.01 0.13 5.80 -103.95 -0.60 -0.48 16 3 C -0.20 -1.92 9.72 -39.34 -0.38 -2.30 16 4 C 0.33 3.57 7.74 -16.96 -0.13 3.44 16 5 O -0.48 -4.26 13.55 -18.19 -0.25 -4.51 16 6 N -0.51 -6.43 10.29 -9.20 -0.09 -6.52 16 7 C 0.19 2.44 6.82 -82.18 -0.56 1.88 16 8 C -0.11 -1.26 9.78 36.00 0.35 -0.91 16 9 C -0.18 -2.40 3.65 -104.83 -0.38 -2.78 16 10 C 0.57 9.05 4.21 -12.44 -0.05 9.00 16 11 O -0.53 -10.61 16.51 5.29 0.09 -10.52 16 12 N -0.60 -9.01 2.98 -174.20 -0.52 -9.53 16 13 C 0.11 1.31 6.31 -3.93 -0.02 1.29 16 14 C -0.13 -1.57 6.06 -26.83 -0.16 -1.74 16 15 C -0.13 -2.09 5.13 -26.69 -0.14 -2.23 16 16 C 0.17 3.30 2.74 -67.79 -0.19 3.12 16 17 H 0.06 1.32 7.87 -51.92 -0.41 0.91 16 18 N -0.59 -14.23 2.82 -173.32 -0.49 -14.72 16 19 C 0.16 3.81 7.92 59.85 0.47 4.29 16 20 C -0.26 -6.95 9.59 -15.06 -0.14 -7.09 16 21 H 0.07 1.78 7.82 -52.49 -0.41 1.37 16 22 C 0.00 0.13 5.12 -17.43 -0.09 0.04 16 23 N -0.91 -26.08 10.64 55.49 0.59 -25.49 16 24 Si 0.91 21.72 29.57 -169.99 -5.03 16.70 16 25 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 26 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 27 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 28 C 0.10 1.79 5.80 -3.69 -0.02 1.77 16 29 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.08 0.61 8.10 -51.93 -0.42 0.19 16 31 H 0.08 0.96 7.19 -51.93 -0.37 0.59 16 32 H 0.15 1.04 8.06 -52.49 -0.42 0.62 16 33 H 0.40 1.52 9.06 45.56 0.41 1.93 16 34 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.08 1.04 7.06 -51.93 -0.37 0.67 16 37 H 0.07 0.82 6.22 -51.93 -0.32 0.49 16 38 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.06 0.95 6.71 -51.93 -0.35 0.60 16 42 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 43 H 0.03 0.74 7.42 -51.93 -0.39 0.35 16 44 H 0.04 1.16 7.22 -51.93 -0.37 0.79 16 45 H 0.00 -0.02 6.45 -51.93 -0.33 -0.35 16 46 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 47 H 0.06 1.20 7.52 -51.93 -0.39 0.81 16 48 H 0.09 2.05 7.00 -51.93 -0.36 1.69 16 LS Contribution 382.74 15.07 5.77 5.77 Total: -1.00 -33.10 382.74 -8.23 -41.34 By element: Atomic # 1 Polarization: 7.72 SS G_CDS: -6.60 Total: 1.11 kcal Atomic # 6 Polarization: 8.07 SS G_CDS: -1.70 Total: 6.37 kcal Atomic # 7 Polarization: -55.74 SS G_CDS: -0.51 Total: -56.25 kcal Atomic # 8 Polarization: -14.87 SS G_CDS: -0.16 Total: -15.03 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.03 Total: 16.70 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -33.10 -8.23 -41.34 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027688844.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.634 kcal (2) G-P(sol) polarization free energy of solvation -33.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds