Wall clock time and date at job start Tue Mar 31 2020 17:33:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.37998 * 120.82007 * 2 1 4 4 C 1.39122 * 119.26482 * 180.02562 * 3 2 1 5 5 O 1.35501 * 119.52340 * 179.97438 * 4 3 2 6 6 N 1.32438 * 120.95000 * 359.74583 * 4 3 2 7 7 C 1.31641 * 121.79772 * 0.51806 * 6 4 3 8 8 C 1.50695 * 119.68517 * 179.75652 * 7 6 4 9 9 C 1.39561 * 120.62750 * 359.48470 * 7 6 4 10 10 C 1.47610 * 120.50234 * 180.22999 * 9 7 6 11 11 O 1.21585 * 119.99865 * 89.99828 * 10 9 7 12 12 N 1.34774 * 120.00081 * 270.00445 * 10 9 7 13 13 C 1.46925 * 120.63236 * 359.71241 * 12 10 9 14 14 C 1.52761 * 109.00984 * 233.59222 * 13 12 10 15 15 C 1.53040 * 109.38100 * 305.58232 * 14 13 12 16 16 C 1.53038 * 109.53708 * 61.24216 * 15 14 13 17 17 H 1.09007 * 109.49822 * 58.58483 * 16 15 14 18 18 N 1.46497 * 109.50103 * 178.67866 * 16 15 14 19 19 C 1.46505 * 119.99441 * 59.84319 * 18 16 15 20 20 C 1.36931 * 120.00284 * 239.84002 * 18 16 15 21 21 H 1.08000 * 119.99955 * 23.01241 * 20 18 16 22 22 C 1.38822 * 119.99907 * 203.00961 * 20 18 16 23 23 N 1.31613 * 119.99837 * 11.64095 * 22 20 18 24 24 Si 1.86800 * 119.99706 * 191.64348 * 22 20 18 25 25 H 1.48499 * 109.47218 * 60.00336 * 24 22 20 26 26 H 1.48501 * 109.46721 * 179.97438 * 24 22 20 27 27 H 1.48491 * 109.47257 * 299.99993 * 24 22 20 28 28 C 1.46931 * 120.63072 * 179.97438 * 12 10 9 29 29 H 1.08995 * 109.47135 * 269.98229 * 1 2 3 30 30 H 1.09003 * 109.46898 * 29.98364 * 1 2 3 31 31 H 1.09003 * 109.46749 * 149.97907 * 1 2 3 32 32 H 1.07997 * 120.36349 * 359.97438 * 3 2 1 33 33 H 0.96705 * 113.99730 * 90.00593 * 5 4 3 34 34 H 1.09003 * 109.47420 * 269.73031 * 8 7 6 35 35 H 1.09003 * 109.47331 * 29.72747 * 8 7 6 36 36 H 1.09000 * 109.47091 * 149.72584 * 8 7 6 37 37 H 1.09007 * 109.58332 * 353.42558 * 13 12 10 38 38 H 1.08997 * 109.59108 * 113.84260 * 13 12 10 39 39 H 1.09006 * 109.56335 * 185.55284 * 14 13 12 40 40 H 1.08999 * 109.36124 * 65.50012 * 14 13 12 41 41 H 1.09003 * 109.46361 * 301.22444 * 15 14 13 42 42 H 1.09002 * 109.45885 * 181.26256 * 15 14 13 43 43 H 1.08996 * 109.47435 * 93.85332 * 19 18 16 44 44 H 1.09003 * 109.47042 * 213.85500 * 19 18 16 45 45 H 1.08995 * 109.47337 * 333.84749 * 19 18 16 46 46 H 0.97001 * 120.00094 * 180.02562 * 23 22 20 47 47 H 1.09000 * 109.58204 * 246.15335 * 28 12 10 48 48 H 1.08997 * 109.58719 * 6.43427 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2141 1.1851 0.0000 4 6 3.6048 1.1473 -0.0005 5 8 4.3042 2.3078 -0.0011 6 7 4.2548 -0.0065 0.0040 7 6 3.6205 -1.1600 -0.0010 8 6 4.4081 -2.4448 -0.0010 9 6 2.2256 -1.2044 -0.0005 10 6 1.5172 -2.4994 -0.0009 11 8 1.2259 -3.0333 1.0519 12 7 1.1934 -3.0900 -1.1683 13 6 1.5332 -2.4542 -2.4485 14 6 0.2694 -2.3417 -3.2992 15 6 -0.3761 -3.7226 -3.4347 16 6 -0.7687 -4.2423 -2.0498 17 1 -1.4588 -3.5412 -1.5803 18 7 -1.4150 -5.5502 -2.1833 19 6 -0.6879 -6.6679 -2.7904 20 6 -2.6985 -5.7280 -1.7406 21 1 -3.3589 -4.8790 -1.6439 22 6 -3.1509 -6.9998 -1.4162 23 7 -2.2964 -7.9954 -1.3118 24 14 -4.9723 -7.2978 -1.1281 25 1 -5.7312 -6.9495 -2.3561 26 1 -5.1936 -8.7290 -0.7993 27 1 -5.4399 -6.4523 -0.0006 28 6 0.4888 -4.3792 -1.1849 29 1 -0.3633 -0.0003 1.0276 30 1 -0.3633 0.8902 -0.5136 31 1 -0.3633 -0.8898 -0.5142 32 1 1.6935 2.1313 -0.0004 33 1 4.5077 2.6448 0.8822 34 1 4.5976 -2.7548 -1.0287 35 1 5.3570 -2.2894 0.5124 36 1 3.8394 -3.2196 0.5132 37 1 1.9389 -1.4590 -2.2659 38 1 2.2710 -3.0610 -2.9735 39 1 0.5275 -1.9621 -4.2879 40 1 -0.4304 -1.6585 -2.8180 41 1 0.3331 -4.4117 -3.8934 42 1 -1.2658 -3.6478 -4.0601 43 1 -0.2069 -7.2558 -2.0088 44 1 -1.3854 -7.2982 -3.3420 45 1 0.0694 -6.2811 -3.4723 46 1 -2.6125 -8.8841 -1.0855 47 1 1.1398 -5.1460 -1.6049 48 1 0.2077 -4.6551 -0.1686 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027688844.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:33:56 Heat of formation + Delta-G solvation = -41.113353 kcal Electronic energy + Delta-G solvation = -30016.558630 eV Core-core repulsion = 26071.466660 eV Total energy + Delta-G solvation = -3945.091970 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.23104 -40.79217 -39.00589 -38.10000 -36.79214 -35.39238 -34.05603 -32.88238 -32.81376 -30.54312 -29.10037 -28.88183 -28.03839 -26.52308 -25.37513 -24.31383 -23.07836 -22.40692 -21.42641 -20.16993 -19.41284 -18.87126 -18.52745 -18.23110 -17.38134 -16.97629 -16.67471 -15.94833 -15.82024 -15.41697 -15.29965 -15.21108 -15.09449 -14.71409 -14.42385 -14.32964 -14.22475 -14.10056 -13.88145 -13.76302 -13.52774 -13.36254 -13.14043 -12.97666 -12.90026 -12.79549 -12.61794 -12.48961 -12.21829 -12.19185 -12.09428 -11.77119 -11.68272 -11.39279 -11.26335 -10.64343 -10.62514 -10.54240 -9.86049 -9.77330 -8.76139 -7.83428 -5.32209 -0.33710 0.02618 1.37727 1.45727 1.47510 1.54051 1.85356 2.26608 2.50476 2.61873 3.28961 3.30871 3.36287 3.48532 3.60095 3.92307 3.99597 4.03685 4.07169 4.15466 4.23453 4.26947 4.35760 4.38752 4.50948 4.55478 4.58115 4.59760 4.66127 4.76932 4.81660 4.86699 4.93368 4.95151 5.01440 5.05854 5.12408 5.14211 5.28118 5.37443 5.41530 5.44078 5.55684 5.63170 5.73384 6.30123 6.32984 6.55575 6.78607 6.99313 7.14966 7.86404 8.29033 9.19107 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.020813 B = 0.003029 C = 0.002976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.018304 B = 9242.532078 C = 9405.127867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.010 3.990 3 C -0.182 4.182 4 C 0.330 3.670 5 O -0.484 6.484 6 N -0.524 5.524 7 C 0.187 3.813 8 C -0.111 4.111 9 C -0.198 4.198 10 C 0.572 3.428 11 O -0.581 6.581 12 N -0.591 5.591 13 C 0.107 3.893 14 C -0.120 4.120 15 C -0.122 4.122 16 C 0.169 3.831 17 H 0.048 0.952 18 N -0.607 5.607 19 C 0.179 3.821 20 C -0.266 4.266 21 H 0.068 0.932 22 C -0.051 4.051 23 N -0.937 5.937 24 Si 0.968 3.032 25 H -0.275 1.275 26 H -0.295 1.295 27 H -0.279 1.279 28 C 0.114 3.886 29 H 0.083 0.917 30 H 0.112 0.888 31 H 0.057 0.943 32 H 0.179 0.821 33 H 0.424 0.576 34 H 0.100 0.900 35 H 0.095 0.905 36 H 0.061 0.939 37 H 0.092 0.908 38 H 0.086 0.914 39 H 0.106 0.894 40 H 0.066 0.934 41 H 0.064 0.936 42 H 0.059 0.941 43 H -0.001 1.001 44 H 0.018 0.982 45 H 0.036 0.964 46 H 0.248 0.752 47 H 0.063 0.937 48 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.296 21.406 -2.292 24.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.002 3.998 3 C -0.203 4.203 4 C 0.151 3.849 5 O -0.295 6.295 6 N -0.245 5.245 7 C 0.049 3.951 8 C -0.168 4.168 9 C -0.204 4.204 10 C 0.360 3.640 11 O -0.461 6.461 12 N -0.322 5.322 13 C -0.015 4.015 14 C -0.159 4.159 15 C -0.161 4.161 16 C 0.061 3.939 17 H 0.066 0.934 18 N -0.329 5.329 19 C 0.034 3.966 20 C -0.396 4.396 21 H 0.086 0.914 22 C -0.246 4.246 23 N -0.583 5.583 24 Si 0.796 3.204 25 H -0.201 1.201 26 H -0.221 1.221 27 H -0.205 1.205 28 C -0.011 4.011 29 H 0.102 0.898 30 H 0.130 0.870 31 H 0.076 0.924 32 H 0.196 0.804 33 H 0.287 0.713 34 H 0.119 0.881 35 H 0.114 0.886 36 H 0.080 0.920 37 H 0.110 0.890 38 H 0.104 0.896 39 H 0.125 0.875 40 H 0.084 0.916 41 H 0.083 0.917 42 H 0.078 0.922 43 H 0.017 0.983 44 H 0.036 0.964 45 H 0.054 0.946 46 H 0.057 0.943 47 H 0.082 0.918 48 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 12.975 20.967 -2.317 24.766 hybrid contribution -1.798 -0.935 1.120 2.315 sum 11.177 20.032 -1.197 22.971 Atomic orbital electron populations 1.20999 0.88525 1.04603 1.03942 1.20401 0.97589 0.90610 0.91161 1.22086 0.93213 0.99852 1.05146 1.19457 0.87669 0.85084 0.92655 1.84677 1.75752 1.33002 1.36105 1.67027 1.42267 0.98223 1.16961 1.21087 0.88924 0.93662 0.91467 1.20863 1.00453 0.90880 1.04599 1.20536 0.95149 0.93675 1.10991 1.18305 0.77988 0.84424 0.83322 1.90809 1.56318 1.66284 1.32730 1.48261 1.56038 1.21463 1.06434 1.21891 0.98202 0.98695 0.82692 1.21801 0.96262 0.96517 1.01296 1.21922 1.00666 0.96808 0.96711 1.20771 0.91493 0.86996 0.94643 0.93390 1.44130 1.12431 1.07406 1.68981 1.20505 0.93512 0.88619 0.93967 1.19501 0.88539 0.93502 1.38063 0.91399 1.25798 1.01795 0.96806 1.00230 1.70219 1.33856 1.00726 1.53502 0.85334 0.80514 0.76332 0.78217 1.20089 1.22075 1.20491 1.22104 0.94357 0.83889 1.00751 0.89819 0.86959 0.92438 0.80400 0.71328 0.88137 0.88645 0.92006 0.89019 0.89564 0.87522 0.91551 0.91710 0.92176 0.98312 0.96353 0.94579 0.94273 0.91848 0.93293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.30 9.69 71.24 0.69 -1.61 16 2 C 0.01 0.21 5.80 -19.43 -0.11 0.10 16 3 C -0.18 -2.90 9.72 22.43 0.22 -2.68 16 4 C 0.33 6.15 7.74 84.81 0.66 6.80 16 5 O -0.48 -6.77 13.55 -88.02 -1.19 -7.97 16 6 N -0.52 -12.10 10.29 -295.89 -3.04 -15.15 16 7 C 0.19 4.53 6.82 42.91 0.29 4.82 16 8 C -0.11 -2.41 9.78 71.23 0.70 -1.72 16 9 C -0.20 -5.10 3.65 -20.00 -0.07 -5.17 16 10 C 0.57 18.63 4.21 86.72 0.37 18.99 16 11 O -0.58 -24.70 16.51 -3.98 -0.07 -24.76 16 12 N -0.59 -17.82 2.98 -823.32 -2.45 -20.27 16 13 C 0.11 2.29 6.31 86.22 0.54 2.84 16 14 C -0.12 -2.51 6.06 30.53 0.19 -2.33 16 15 C -0.12 -3.61 5.13 30.62 0.16 -3.45 16 16 C 0.17 6.67 2.74 45.08 0.12 6.79 16 17 H 0.05 2.02 7.87 -2.38 -0.02 2.01 16 18 N -0.61 -30.03 2.82 -702.26 -1.98 -32.01 16 19 C 0.18 8.68 7.92 127.77 1.01 9.69 16 20 C -0.27 -14.70 9.59 84.04 0.81 -13.89 16 21 H 0.07 3.66 7.82 -2.91 -0.02 3.63 16 22 C -0.05 -2.89 5.12 84.87 0.43 -2.45 16 23 N -0.94 -56.03 10.64 21.65 0.23 -55.80 16 24 Si 0.97 45.63 29.57 68.60 2.03 47.66 16 25 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 26 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 27 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 28 C 0.11 4.37 5.80 86.38 0.50 4.87 16 29 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 30 H 0.11 1.30 8.10 -2.39 -0.02 1.28 16 31 H 0.06 1.33 7.19 -2.39 -0.02 1.32 16 32 H 0.18 1.63 8.06 -2.91 -0.02 1.61 16 33 H 0.42 1.63 9.06 -74.05 -0.67 0.96 16 34 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 35 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 36 H 0.06 1.60 7.06 -2.39 -0.02 1.59 16 37 H 0.09 1.73 6.22 -2.38 -0.01 1.72 16 38 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 39 H 0.11 1.60 8.14 -2.38 -0.02 1.58 16 40 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 41 H 0.06 1.88 6.71 -2.39 -0.02 1.86 16 42 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 43 H 0.00 -0.08 7.42 -2.39 -0.02 -0.10 16 44 H 0.02 0.95 7.22 -2.39 -0.02 0.93 16 45 H 0.04 1.45 6.45 -2.39 -0.02 1.43 16 46 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 47 H 0.06 2.43 7.52 -2.39 -0.02 2.41 16 48 H 0.05 2.31 7.00 -2.39 -0.02 2.30 16 Total: -1.00 -75.88 382.74 0.33 -75.55 By element: Atomic # 1 Polarization: 10.84 SS G_CDS: 0.31 Total: 11.15 kcal Atomic # 6 Polarization: 15.10 SS G_CDS: 6.50 Total: 21.59 kcal Atomic # 7 Polarization: -115.98 SS G_CDS: -7.24 Total: -123.22 kcal Atomic # 8 Polarization: -31.47 SS G_CDS: -1.26 Total: -32.73 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 2.03 Total: 47.66 kcal Total: -75.88 0.33 -75.55 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027688844.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.435 kcal (2) G-P(sol) polarization free energy of solvation -75.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds