Wall clock time and date at job start Tue Mar 31 2020 17:18:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38089 * 119.58506 * 2 1 4 4 C 1.38795 * 119.29033 * 179.69949 * 3 2 1 5 5 C 1.50698 * 120.75984 * 180.29667 * 4 3 2 6 6 C 1.38424 * 118.47731 * 0.53762 * 4 3 2 7 7 C 1.50703 * 120.43629 * 179.73435 * 6 4 3 8 8 C 1.50700 * 109.47148 * 269.72311 * 7 6 4 9 9 O 1.21283 * 119.99803 * 0.02562 * 8 7 6 10 10 N 1.34777 * 119.99675 * 180.28037 * 8 7 6 11 11 C 1.46496 * 120.00345 * 359.72090 * 10 8 7 12 12 C 1.46497 * 119.99525 * 179.72583 * 10 8 7 13 13 H 1.08996 * 110.64621 * 358.31372 * 12 10 8 14 14 C 1.55155 * 110.72079 * 234.97048 * 12 10 8 15 15 C 1.54909 * 101.58554 * 277.14221 * 14 12 10 16 16 N 1.47424 * 104.82843 * 322.98896 * 15 14 12 17 17 C 1.36941 * 125.64630 * 204.16193 * 16 15 14 18 18 H 1.08003 * 120.00014 * 179.97438 * 17 16 15 19 19 C 1.38807 * 119.99958 * 359.95985 * 17 16 15 20 20 N 1.31618 * 120.00304 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 119.99950 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47220 * 0.02562 * 21 19 17 23 23 H 1.48508 * 109.47298 * 120.00128 * 21 19 17 24 24 H 1.48503 * 109.47410 * 239.99917 * 21 19 17 25 25 C 1.47022 * 108.70685 * 24.12881 * 16 15 14 26 26 C 1.38874 * 119.11851 * 359.46423 * 6 4 3 27 27 O 1.35672 * 119.68458 * 180.25277 * 26 6 4 28 28 N 1.31936 * 119.58270 * 179.97438 * 2 1 3 29 29 H 1.08996 * 109.47399 * 270.02344 * 1 2 3 30 30 H 1.09007 * 109.47147 * 30.02476 * 1 2 3 31 31 H 1.09007 * 109.47078 * 150.02029 * 1 2 3 32 32 H 1.08002 * 120.35671 * 359.97267 * 3 2 1 33 33 H 1.08997 * 109.46932 * 270.24507 * 5 4 3 34 34 H 1.08997 * 109.46885 * 30.24797 * 5 4 3 35 35 H 1.08991 * 109.46761 * 150.24584 * 5 4 3 36 36 H 1.09009 * 109.46601 * 149.72333 * 7 6 4 37 37 H 1.08998 * 109.47035 * 29.72841 * 7 6 4 38 38 H 1.08997 * 109.47115 * 90.00316 * 11 10 8 39 39 H 1.08995 * 109.47364 * 210.00706 * 11 10 8 40 40 H 1.09002 * 109.47090 * 330.00257 * 11 10 8 41 41 H 1.08997 * 111.00199 * 35.21823 * 14 12 10 42 42 H 1.09004 * 111.00790 * 159.06303 * 14 12 10 43 43 H 1.08995 * 110.36859 * 204.15195 * 15 14 12 44 44 H 1.09000 * 110.45737 * 81.86989 * 15 14 12 45 45 H 0.97003 * 120.00473 * 180.02562 * 20 19 17 46 46 H 1.09002 * 109.88246 * 239.52432 * 25 16 15 47 47 H 1.08998 * 109.88178 * 118.35717 * 25 16 15 48 48 H 0.96704 * 114.00519 * 89.99888 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1887 1.2009 0.0000 4 6 3.5766 1.1937 0.0063 5 6 4.3540 2.4847 0.0133 6 6 4.2304 -0.0264 0.0011 7 6 5.7363 -0.0856 0.0016 8 6 6.2387 -0.1057 -1.4191 9 8 5.4515 -0.0744 -2.3412 10 7 7.5626 -0.1635 -1.6648 11 6 8.5135 -0.2007 -0.5510 12 6 8.0507 -0.1891 -3.0458 13 1 7.2172 -0.1855 -3.7482 14 6 8.9671 -1.4187 -3.2815 15 6 10.3243 -0.9035 -2.7409 16 7 10.3711 0.5173 -3.1315 17 6 11.5081 1.2621 -3.2980 18 1 11.4362 2.3002 -3.5875 19 6 12.7531 0.6830 -3.0946 20 7 12.8409 -0.5820 -2.7421 21 14 14.3041 1.6988 -3.3225 22 1 13.9363 3.0822 -3.7178 23 1 15.0644 1.7346 -2.0473 24 1 15.1450 1.0875 -4.3829 25 6 8.9951 1.0020 -3.3133 26 6 3.4802 -1.1951 0.0010 27 8 4.1092 -2.3972 0.0011 28 7 2.1583 -1.1474 0.0005 29 1 -0.3634 0.0004 1.0276 30 1 -0.3634 0.8898 -0.5142 31 1 -0.3633 -0.8902 -0.5136 32 1 1.6478 2.1356 -0.0004 33 1 4.5423 2.8009 -1.0127 34 1 3.7785 3.2525 0.5303 35 1 5.3033 2.3344 0.5272 36 1 6.0641 -0.9892 0.5158 37 1 6.1341 0.7895 0.5154 38 1 8.7052 -1.2366 -0.2713 39 1 9.4473 0.2725 -0.8545 40 1 8.0955 0.3345 0.3016 41 1 8.6203 -2.2796 -2.7100 42 1 9.0347 -1.6580 -4.3428 43 1 11.1478 -1.4504 -3.2000 44 1 10.3636 -1.0002 -1.6559 45 1 13.7110 -0.9866 -2.5996 46 1 8.8600 1.3602 -4.3339 47 1 8.7884 1.8050 -2.6059 48 1 4.2915 -2.7458 0.8845 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033355170.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:18:49 Heat of formation + Delta-G solvation = -5.397677 kcal Electronic energy + Delta-G solvation = -29437.566928 eV Core-core repulsion = 25494.023706 eV Total energy + Delta-G solvation = -3943.543222 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.03734 -39.68369 -37.48404 -37.38740 -34.91595 -34.38986 -32.30131 -31.95831 -30.41828 -29.17325 -28.04435 -27.87924 -26.36667 -25.76685 -24.24062 -22.92840 -21.43944 -20.37616 -20.13756 -18.58480 -18.46463 -17.41949 -17.12589 -16.96777 -16.07024 -15.52035 -15.39036 -15.20177 -14.71025 -14.36862 -13.87787 -13.81930 -13.67747 -13.54238 -13.15973 -13.12869 -12.92009 -12.62370 -12.53887 -12.23317 -12.12759 -12.07486 -11.94438 -11.77508 -11.65825 -11.62301 -11.57739 -11.07053 -10.93195 -10.80297 -10.30369 -10.12523 -9.88674 -9.65789 -9.57586 -9.54523 -9.39007 -8.74971 -8.68686 -8.23788 -6.88375 -5.70085 -3.12142 0.84156 1.05519 2.85685 3.20303 3.36007 3.38727 3.42450 3.44432 3.60168 4.27316 4.41007 4.45137 4.66543 4.67966 4.81315 4.95459 5.09674 5.16539 5.22596 5.31464 5.36945 5.41351 5.41646 5.45504 5.48947 5.51294 5.58018 5.67309 5.72150 5.84635 5.84963 5.89935 5.93885 6.12867 6.21246 6.31188 6.36607 6.40438 6.56380 6.60411 6.71124 7.04398 7.36332 7.44173 7.58973 7.73632 7.81742 7.81924 8.31296 8.44323 9.17276 9.77745 10.42302 11.33349 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.026898 B = 0.002581 C = 0.002487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.723176 B =10847.824103 C =11254.478901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.148 3.852 3 C -0.184 4.184 4 C -0.011 4.011 5 C -0.121 4.121 6 C -0.134 4.134 7 C -0.093 4.093 8 C 0.518 3.482 9 O -0.543 6.543 10 N -0.594 5.594 11 C 0.069 3.931 12 C 0.126 3.874 13 H 0.098 0.902 14 C -0.154 4.154 15 C 0.145 3.855 16 N -0.603 5.603 17 C -0.221 4.221 18 H 0.077 0.923 19 C -0.011 4.011 20 N -0.921 5.921 21 Si 0.913 3.087 22 H -0.280 1.280 23 H -0.291 1.291 24 H -0.291 1.291 25 C 0.128 3.872 26 C 0.332 3.668 27 O -0.475 6.475 28 N -0.508 5.508 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.137 0.863 33 H 0.083 0.917 34 H 0.073 0.927 35 H 0.074 0.926 36 H 0.103 0.897 37 H 0.105 0.895 38 H 0.055 0.945 39 H 0.103 0.897 40 H 0.058 0.942 41 H 0.061 0.939 42 H 0.070 0.930 43 H 0.105 0.895 44 H 0.022 0.978 45 H 0.251 0.749 46 H 0.032 0.968 47 H 0.026 0.974 48 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.572 1.827 11.000 22.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.011 3.989 3 C -0.204 4.204 4 C -0.019 4.019 5 C -0.177 4.177 6 C -0.138 4.138 7 C -0.133 4.133 8 C 0.306 3.694 9 O -0.420 6.420 10 N -0.326 5.326 11 C -0.074 4.074 12 C 0.023 3.977 13 H 0.116 0.884 14 C -0.194 4.194 15 C 0.021 3.979 16 N -0.330 5.330 17 C -0.350 4.350 18 H 0.095 0.905 19 C -0.206 4.206 20 N -0.570 5.570 21 Si 0.744 3.256 22 H -0.206 1.206 23 H -0.218 1.218 24 H -0.218 1.218 25 C 0.001 3.999 26 C 0.153 3.847 27 O -0.282 6.282 28 N -0.228 5.228 29 H 0.096 0.904 30 H 0.095 0.905 31 H 0.096 0.904 32 H 0.155 0.845 33 H 0.102 0.898 34 H 0.092 0.908 35 H 0.093 0.907 36 H 0.121 0.879 37 H 0.122 0.878 38 H 0.073 0.927 39 H 0.121 0.879 40 H 0.076 0.924 41 H 0.080 0.920 42 H 0.089 0.911 43 H 0.123 0.877 44 H 0.040 0.960 45 H 0.062 0.938 46 H 0.050 0.950 47 H 0.044 0.956 48 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges -20.182 1.080 9.913 22.511 hybrid contribution 1.483 1.031 0.430 1.857 sum -18.698 2.111 10.343 21.472 Atomic orbital electron populations 1.20723 0.88617 1.03635 1.03031 1.20939 0.96647 0.87231 0.94095 1.21765 0.93869 0.99310 1.05414 1.20061 0.93708 0.94889 0.93237 1.20908 0.99878 0.93339 1.03601 1.20178 0.95640 0.92854 1.05094 1.20523 0.91438 1.05130 0.96242 1.20265 0.82078 0.76461 0.90631 1.90680 1.54981 1.50199 1.46143 1.47782 1.05230 1.72030 1.07562 1.22108 0.95291 1.01824 0.88205 1.22124 0.96672 0.97044 0.81888 0.88391 1.23343 0.98659 0.96020 1.01373 1.22116 0.93638 0.85214 0.96978 1.44560 0.99497 1.08139 1.80758 1.19114 0.83151 0.93449 1.39254 0.90490 1.24774 0.97521 0.96425 1.01879 1.69809 1.22598 1.10824 1.53770 0.86013 0.83225 0.79004 0.77327 1.20577 1.21787 1.21757 1.21636 0.86023 0.94158 0.98107 1.18823 0.86571 0.84773 0.94528 1.84868 1.76530 1.33452 1.33308 1.66957 1.09505 1.30692 1.15671 0.90356 0.90535 0.90404 0.84549 0.89834 0.90779 0.90739 0.87890 0.87753 0.92678 0.87866 0.92351 0.92033 0.91113 0.87717 0.96037 0.93776 0.95040 0.95609 0.74711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.79 10.17 36.00 0.37 -0.42 16 2 C 0.15 1.68 6.78 -82.60 -0.56 1.12 16 3 C -0.18 -1.90 9.44 -39.43 -0.37 -2.27 16 4 C -0.01 -0.13 5.91 -104.35 -0.62 -0.75 16 5 C -0.12 -1.09 9.67 36.00 0.35 -0.75 16 6 C -0.13 -1.71 4.40 -104.32 -0.46 -2.17 16 7 C -0.09 -1.10 3.81 -29.03 -0.11 -1.21 16 8 C 0.52 8.37 7.67 -10.98 -0.08 8.29 16 9 O -0.54 -10.81 15.40 5.55 0.09 -10.73 16 10 N -0.59 -9.79 2.82 -171.84 -0.49 -10.28 16 11 C 0.07 1.01 8.33 59.84 0.50 1.51 16 12 C 0.13 2.37 3.58 -66.10 -0.24 2.13 16 13 H 0.10 1.90 6.99 -51.93 -0.36 1.54 16 14 C -0.15 -2.99 6.53 -24.58 -0.16 -3.15 16 15 C 0.14 3.33 5.01 -2.53 -0.01 3.32 16 16 N -0.60 -14.75 2.97 -170.07 -0.50 -15.26 16 17 C -0.22 -5.95 10.27 -15.06 -0.15 -6.11 16 18 H 0.08 2.03 7.83 -52.48 -0.41 1.62 16 19 C -0.01 -0.29 5.49 -17.43 -0.10 -0.38 16 20 N -0.92 -25.86 10.09 55.49 0.56 -25.30 16 21 Si 0.91 21.52 29.55 -169.99 -5.02 16.50 16 22 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 23 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 24 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 25 C 0.13 2.67 6.24 -3.06 -0.02 2.65 16 26 C 0.33 4.56 7.72 -17.12 -0.13 4.43 16 27 O -0.48 -5.97 12.62 -18.72 -0.24 -6.21 16 28 N -0.51 -7.05 10.30 -9.55 -0.10 -7.14 16 29 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.08 0.44 8.08 -51.92 -0.42 0.02 16 31 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.14 1.00 8.06 -52.49 -0.42 0.58 16 33 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 34 H 0.07 0.50 8.10 -51.93 -0.42 0.08 16 35 H 0.07 0.61 6.07 -51.93 -0.32 0.30 16 36 H 0.10 1.02 7.51 -51.92 -0.39 0.63 16 37 H 0.10 0.99 5.33 -51.93 -0.28 0.72 16 38 H 0.05 0.76 7.99 -51.93 -0.41 0.35 16 39 H 0.10 1.89 5.19 -51.93 -0.27 1.62 16 40 H 0.06 0.66 6.45 -51.93 -0.33 0.32 16 41 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 42 H 0.07 1.37 8.14 -51.93 -0.42 0.94 16 43 H 0.11 2.78 5.87 -51.93 -0.30 2.47 16 44 H 0.02 0.50 5.54 -51.93 -0.29 0.21 16 45 H 0.25 6.87 8.31 -40.82 -0.34 6.53 16 46 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 47 H 0.03 0.54 8.04 -51.93 -0.42 0.12 16 48 H 0.40 2.69 9.06 45.56 0.41 3.10 16 LS Contribution 379.40 15.07 5.72 5.72 Total: -1.00 -34.62 379.40 -8.10 -42.72 By element: Atomic # 1 Polarization: 10.03 SS G_CDS: -6.31 Total: 3.72 kcal Atomic # 6 Polarization: 8.06 SS G_CDS: -1.80 Total: 6.26 kcal Atomic # 7 Polarization: -57.45 SS G_CDS: -0.53 Total: -57.98 kcal Atomic # 8 Polarization: -16.78 SS G_CDS: -0.15 Total: -16.93 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -34.62 -8.10 -42.72 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033355170.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.322 kcal (2) G-P(sol) polarization free energy of solvation -34.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds