Wall clock time and date at job start Tue Mar 31 2020 17:18:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38089 * 119.58506 * 2 1 4 4 C 1.38795 * 119.29033 * 179.69949 * 3 2 1 5 5 C 1.50698 * 120.75984 * 180.29667 * 4 3 2 6 6 C 1.38424 * 118.47731 * 0.53762 * 4 3 2 7 7 C 1.50703 * 120.43629 * 179.73435 * 6 4 3 8 8 C 1.50700 * 109.47148 * 269.72311 * 7 6 4 9 9 O 1.21283 * 119.99803 * 0.02562 * 8 7 6 10 10 N 1.34777 * 119.99675 * 180.28037 * 8 7 6 11 11 C 1.46496 * 120.00345 * 359.72090 * 10 8 7 12 12 C 1.46497 * 119.99525 * 179.72583 * 10 8 7 13 13 H 1.08996 * 110.64621 * 358.31372 * 12 10 8 14 14 C 1.55155 * 110.72079 * 234.97048 * 12 10 8 15 15 C 1.54909 * 101.58554 * 277.14221 * 14 12 10 16 16 N 1.47424 * 104.82843 * 322.98896 * 15 14 12 17 17 C 1.36941 * 125.64630 * 204.16193 * 16 15 14 18 18 H 1.08003 * 120.00014 * 179.97438 * 17 16 15 19 19 C 1.38807 * 119.99958 * 359.95985 * 17 16 15 20 20 N 1.31618 * 120.00304 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 119.99950 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47220 * 0.02562 * 21 19 17 23 23 H 1.48508 * 109.47298 * 120.00128 * 21 19 17 24 24 H 1.48503 * 109.47410 * 239.99917 * 21 19 17 25 25 C 1.47022 * 108.70685 * 24.12881 * 16 15 14 26 26 C 1.38874 * 119.11851 * 359.46423 * 6 4 3 27 27 O 1.35672 * 119.68458 * 180.25277 * 26 6 4 28 28 N 1.31936 * 119.58270 * 179.97438 * 2 1 3 29 29 H 1.08996 * 109.47399 * 270.02344 * 1 2 3 30 30 H 1.09007 * 109.47147 * 30.02476 * 1 2 3 31 31 H 1.09007 * 109.47078 * 150.02029 * 1 2 3 32 32 H 1.08002 * 120.35671 * 359.97267 * 3 2 1 33 33 H 1.08997 * 109.46932 * 270.24507 * 5 4 3 34 34 H 1.08997 * 109.46885 * 30.24797 * 5 4 3 35 35 H 1.08991 * 109.46761 * 150.24584 * 5 4 3 36 36 H 1.09009 * 109.46601 * 149.72333 * 7 6 4 37 37 H 1.08998 * 109.47035 * 29.72841 * 7 6 4 38 38 H 1.08997 * 109.47115 * 90.00316 * 11 10 8 39 39 H 1.08995 * 109.47364 * 210.00706 * 11 10 8 40 40 H 1.09002 * 109.47090 * 330.00257 * 11 10 8 41 41 H 1.08997 * 111.00199 * 35.21823 * 14 12 10 42 42 H 1.09004 * 111.00790 * 159.06303 * 14 12 10 43 43 H 1.08995 * 110.36859 * 204.15195 * 15 14 12 44 44 H 1.09000 * 110.45737 * 81.86989 * 15 14 12 45 45 H 0.97003 * 120.00473 * 180.02562 * 20 19 17 46 46 H 1.09002 * 109.88246 * 239.52432 * 25 16 15 47 47 H 1.08998 * 109.88178 * 118.35717 * 25 16 15 48 48 H 0.96704 * 114.00519 * 89.99888 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1887 1.2009 0.0000 4 6 3.5766 1.1937 0.0063 5 6 4.3540 2.4847 0.0133 6 6 4.2304 -0.0264 0.0011 7 6 5.7363 -0.0856 0.0016 8 6 6.2387 -0.1057 -1.4191 9 8 5.4515 -0.0744 -2.3412 10 7 7.5626 -0.1635 -1.6648 11 6 8.5135 -0.2007 -0.5510 12 6 8.0507 -0.1891 -3.0458 13 1 7.2172 -0.1855 -3.7482 14 6 8.9671 -1.4187 -3.2815 15 6 10.3243 -0.9035 -2.7409 16 7 10.3711 0.5173 -3.1315 17 6 11.5081 1.2621 -3.2980 18 1 11.4362 2.3002 -3.5875 19 6 12.7531 0.6830 -3.0946 20 7 12.8409 -0.5820 -2.7421 21 14 14.3041 1.6988 -3.3225 22 1 13.9363 3.0822 -3.7178 23 1 15.0644 1.7346 -2.0473 24 1 15.1450 1.0875 -4.3829 25 6 8.9951 1.0020 -3.3133 26 6 3.4802 -1.1951 0.0010 27 8 4.1092 -2.3972 0.0011 28 7 2.1583 -1.1474 0.0005 29 1 -0.3634 0.0004 1.0276 30 1 -0.3634 0.8898 -0.5142 31 1 -0.3633 -0.8902 -0.5136 32 1 1.6478 2.1356 -0.0004 33 1 4.5423 2.8009 -1.0127 34 1 3.7785 3.2525 0.5303 35 1 5.3033 2.3344 0.5272 36 1 6.0641 -0.9892 0.5158 37 1 6.1341 0.7895 0.5154 38 1 8.7052 -1.2366 -0.2713 39 1 9.4473 0.2725 -0.8545 40 1 8.0955 0.3345 0.3016 41 1 8.6203 -2.2796 -2.7100 42 1 9.0347 -1.6580 -4.3428 43 1 11.1478 -1.4504 -3.2000 44 1 10.3636 -1.0002 -1.6559 45 1 13.7110 -0.9866 -2.5996 46 1 8.8600 1.3602 -4.3339 47 1 8.7884 1.8050 -2.6059 48 1 4.2915 -2.7458 0.8845 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033355170.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:18:48 Heat of formation + Delta-G solvation = -30.453504 kcal Electronic energy + Delta-G solvation = -29438.653430 eV Core-core repulsion = 25494.023706 eV Total energy + Delta-G solvation = -3944.629724 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.96397 -40.97918 -39.01611 -38.27705 -35.96099 -35.78821 -34.01071 -32.88222 -31.53325 -30.77812 -29.56590 -28.64912 -27.60747 -26.98483 -25.95698 -23.83625 -22.49373 -22.04056 -21.49203 -19.90665 -19.36655 -18.93887 -18.37201 -18.26307 -17.33064 -16.76270 -16.55542 -16.39665 -16.25859 -15.62698 -15.35556 -14.99417 -14.68048 -14.37304 -14.30924 -14.00876 -13.91007 -13.82173 -13.80683 -13.57650 -13.31807 -13.24246 -13.17785 -12.97761 -12.85010 -12.80066 -12.79235 -12.49961 -12.40502 -12.34955 -11.99050 -11.95499 -11.79755 -11.42179 -10.88786 -10.68225 -10.42621 -10.34755 -9.63292 -9.60187 -8.86430 -7.75270 -5.19241 0.00036 0.21870 1.48617 1.49882 1.59433 1.62299 2.00475 2.50754 2.57287 2.71485 3.35280 3.44614 3.61475 3.69512 3.76166 3.82676 3.89618 3.91563 4.05459 4.21852 4.28495 4.31335 4.41387 4.47930 4.57109 4.62685 4.64518 4.68735 4.71342 4.73173 4.80430 4.85078 4.89544 4.94038 5.01903 5.03149 5.12193 5.14509 5.23758 5.34848 5.47566 5.57665 5.67187 5.68980 5.84084 6.32742 6.46718 6.63932 6.98827 7.12940 7.17724 7.78602 8.42697 9.26060 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.026898 B = 0.002581 C = 0.002487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.723176 B =10847.824103 C =11254.478901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.135 3.865 3 C -0.185 4.185 4 C -0.020 4.020 5 C -0.119 4.119 6 C -0.152 4.152 7 C -0.084 4.084 8 C 0.518 3.482 9 O -0.584 6.584 10 N -0.595 5.595 11 C 0.072 3.928 12 C 0.138 3.862 13 H 0.093 0.907 14 C -0.141 4.141 15 C 0.154 3.846 16 N -0.618 5.618 17 C -0.235 4.235 18 H 0.077 0.923 19 C -0.061 4.061 20 N -0.944 5.944 21 Si 0.976 3.024 22 H -0.270 1.270 23 H -0.290 1.290 24 H -0.295 1.295 25 C 0.131 3.869 26 C 0.313 3.687 27 O -0.493 6.493 28 N -0.540 5.540 29 H 0.096 0.904 30 H 0.098 0.902 31 H 0.067 0.933 32 H 0.168 0.832 33 H 0.069 0.931 34 H 0.099 0.901 35 H 0.083 0.917 36 H 0.124 0.876 37 H 0.132 0.868 38 H 0.064 0.936 39 H 0.067 0.933 40 H 0.098 0.902 41 H 0.077 0.923 42 H 0.068 0.932 43 H 0.069 0.931 44 H 0.020 0.980 45 H 0.247 0.753 46 H 0.027 0.973 47 H 0.029 0.971 48 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.760 3.192 12.532 24.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.002 4.002 3 C -0.204 4.204 4 C -0.028 4.028 5 C -0.175 4.175 6 C -0.156 4.156 7 C -0.123 4.123 8 C 0.308 3.692 9 O -0.464 6.464 10 N -0.327 5.327 11 C -0.070 4.070 12 C 0.033 3.967 13 H 0.111 0.889 14 C -0.180 4.180 15 C 0.029 3.971 16 N -0.344 5.344 17 C -0.364 4.364 18 H 0.095 0.905 19 C -0.254 4.254 20 N -0.594 5.594 21 Si 0.805 3.195 22 H -0.195 1.195 23 H -0.217 1.217 24 H -0.222 1.222 25 C 0.004 3.996 26 C 0.135 3.865 27 O -0.302 6.302 28 N -0.261 5.261 29 H 0.114 0.886 30 H 0.117 0.883 31 H 0.086 0.914 32 H 0.185 0.815 33 H 0.088 0.912 34 H 0.118 0.882 35 H 0.102 0.898 36 H 0.142 0.858 37 H 0.150 0.850 38 H 0.083 0.917 39 H 0.086 0.914 40 H 0.117 0.883 41 H 0.096 0.904 42 H 0.087 0.913 43 H 0.087 0.913 44 H 0.038 0.962 45 H 0.057 0.943 46 H 0.045 0.955 47 H 0.047 0.953 48 H 0.276 0.724 Dipole moment (debyes) X Y Z Total from point charges -21.382 2.447 11.477 24.391 hybrid contribution 1.770 0.611 -0.047 1.874 sum -19.612 3.059 11.430 22.905 Atomic orbital electron populations 1.20821 0.86330 1.04241 1.04334 1.21599 0.98310 0.87099 0.93219 1.22142 0.93789 1.00246 1.04244 1.20452 0.94505 0.95345 0.92472 1.20956 1.00537 0.92904 1.03136 1.20304 0.95972 0.93135 1.06162 1.20540 0.91107 1.07413 0.93253 1.20998 0.81207 0.74921 0.92111 1.90662 1.55849 1.51965 1.47912 1.47819 1.05950 1.72033 1.06854 1.22122 0.93612 1.02706 0.88599 1.21811 0.95714 0.95466 0.83696 0.88894 1.23190 0.96755 0.96777 1.01323 1.21883 0.94176 0.84422 0.96613 1.44738 1.00261 1.08724 1.80720 1.19402 0.84275 0.93807 1.38870 0.90494 1.25523 1.00156 0.97510 1.02194 1.70036 1.22725 1.12025 1.54616 0.85038 0.79568 0.78048 0.76802 1.19484 1.21736 1.22214 1.21670 0.84951 0.95107 0.97833 1.19087 0.86932 0.85315 0.95190 1.84803 1.76520 1.33517 1.35384 1.66991 1.09897 1.32193 1.17039 0.88591 0.88317 0.91365 0.81464 0.91229 0.88192 0.89847 0.85772 0.85009 0.91714 0.91418 0.88312 0.90402 0.91317 0.91348 0.96191 0.94314 0.95482 0.95303 0.72412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.34 10.17 71.23 0.72 -0.61 16 2 C 0.13 2.86 6.78 42.51 0.29 3.15 16 3 C -0.18 -3.39 9.44 22.37 0.21 -3.18 16 4 C -0.02 -0.42 5.91 -19.69 -0.12 -0.53 16 5 C -0.12 -1.83 9.67 71.24 0.69 -1.14 16 6 C -0.15 -3.63 4.40 -19.67 -0.09 -3.71 16 7 C -0.08 -1.76 3.81 29.10 0.11 -1.65 16 8 C 0.52 15.93 7.67 87.66 0.67 16.60 16 9 O -0.58 -22.96 15.40 -3.04 -0.05 -23.00 16 10 N -0.59 -18.77 2.82 -815.98 -2.30 -21.07 16 11 C 0.07 1.97 8.33 127.77 1.06 3.03 16 12 C 0.14 5.12 3.58 46.18 0.17 5.28 16 13 H 0.09 3.60 6.99 -2.39 -0.02 3.58 16 14 C -0.14 -5.44 6.53 31.99 0.21 -5.23 16 15 C 0.15 7.16 5.01 86.86 0.43 7.60 16 16 N -0.62 -30.55 2.97 -691.98 -2.05 -32.60 16 17 C -0.23 -12.71 10.27 84.03 0.86 -11.85 16 18 H 0.08 4.06 7.83 -2.91 -0.02 4.04 16 19 C -0.06 -3.33 5.49 84.86 0.47 -2.87 16 20 N -0.94 -53.95 10.09 21.65 0.22 -53.73 16 21 Si 0.98 44.45 29.55 68.60 2.03 46.48 16 22 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 23 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 24 H -0.29 -13.55 7.11 99.48 0.71 -12.85 16 25 C 0.13 5.47 6.24 86.73 0.54 6.01 16 26 C 0.31 8.39 7.72 84.78 0.65 9.04 16 27 O -0.49 -12.09 12.62 -89.89 -1.13 -13.23 16 28 N -0.54 -14.70 10.30 -296.98 -3.06 -17.76 16 29 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.10 0.86 8.08 -2.38 -0.02 0.84 16 31 H 0.07 1.05 8.14 -2.38 -0.02 1.03 16 32 H 0.17 1.87 8.06 -2.91 -0.02 1.85 16 33 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.10 0.98 8.10 -2.39 -0.02 0.96 16 35 H 0.08 1.10 6.07 -2.39 -0.01 1.08 16 36 H 0.12 2.08 7.51 -2.38 -0.02 2.07 16 37 H 0.13 2.01 5.33 -2.39 -0.01 2.00 16 38 H 0.06 1.66 7.99 -2.39 -0.02 1.64 16 39 H 0.07 2.41 5.19 -2.39 -0.01 2.40 16 40 H 0.10 1.88 6.45 -2.39 -0.02 1.86 16 41 H 0.08 2.74 8.14 -2.39 -0.02 2.72 16 42 H 0.07 2.66 8.14 -2.39 -0.02 2.64 16 43 H 0.07 3.73 5.87 -2.39 -0.01 3.72 16 44 H 0.02 0.94 5.54 -2.39 -0.01 0.93 16 45 H 0.25 13.74 8.31 -92.71 -0.77 12.97 16 46 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 47 H 0.03 1.20 8.04 -2.39 -0.02 1.18 16 48 H 0.42 5.31 9.06 -74.05 -0.67 4.64 16 Total: -1.00 -76.63 379.40 0.86 -75.77 By element: Atomic # 1 Polarization: 18.89 SS G_CDS: 0.32 Total: 19.21 kcal Atomic # 6 Polarization: 13.05 SS G_CDS: 6.89 Total: 19.94 kcal Atomic # 7 Polarization: -117.97 SS G_CDS: -7.20 Total: -125.17 kcal Atomic # 8 Polarization: -35.05 SS G_CDS: -1.18 Total: -36.23 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.48 kcal Total: -76.63 0.86 -75.77 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033355170.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.320 kcal (2) G-P(sol) polarization free energy of solvation -76.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds