Wall clock time and date at job start Tue Mar 31 2020 17:57:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35917 * 117.00421 * 2 1 4 4 C 1.38860 * 120.40497 * 0.02562 * 3 2 1 5 5 N 1.31874 * 121.00109 * 179.97438 * 4 3 2 6 6 C 1.31682 * 121.94174 * 359.73176 * 5 4 3 7 7 C 1.39526 * 120.68893 * 0.53235 * 6 5 4 8 8 C 1.47857 * 120.53103 * 179.75339 * 7 6 5 9 9 O 1.21550 * 120.00152 * 173.74852 * 8 7 6 10 10 N 1.34775 * 119.99768 * 353.74814 * 8 7 6 11 11 C 1.46498 * 119.99810 * 180.02562 * 10 8 7 12 12 H 1.08995 * 109.26688 * 35.31224 * 11 10 8 13 13 C 1.50882 * 109.37064 * 154.99936 * 11 10 8 14 14 C 1.52565 * 109.36113 * 212.07738 * 13 11 10 15 15 C 1.47100 * 114.32519 * 274.98600 * 14 13 11 16 16 C 1.54859 * 110.32441 * 62.79586 * 15 14 13 17 17 N 1.44579 * 109.60184 * 288.74123 * 16 15 14 18 18 C 1.36936 * 118.63871 * 270.70192 * 17 16 15 19 19 H 1.08007 * 120.00267 * 150.63876 * 18 17 16 20 20 C 1.38811 * 120.00195 * 330.63443 * 18 17 16 21 21 N 1.31623 * 120.00074 * 318.79945 * 20 18 17 22 22 Si 1.86805 * 120.00104 * 138.79883 * 20 18 17 23 23 H 1.48494 * 109.47010 * 180.02562 * 22 20 18 24 24 H 1.48504 * 109.46709 * 60.00107 * 22 20 18 25 25 H 1.48494 * 109.46869 * 300.00324 * 22 20 18 26 26 C 1.47599 * 122.71550 * 90.98230 * 17 16 15 27 27 C 1.38844 * 120.40830 * 180.02562 * 3 2 1 28 28 C 1.50695 * 120.87692 * 0.04148 * 27 3 2 29 29 H 1.08992 * 109.46921 * 59.99302 * 1 2 3 30 30 H 1.08994 * 109.47049 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.46217 * 299.99671 * 1 2 3 32 32 H 1.08005 * 119.49559 * 359.95609 * 4 3 2 33 33 H 1.08003 * 119.65829 * 180.26778 * 6 5 4 34 34 H 0.96998 * 120.00180 * 359.97438 * 10 8 7 35 35 H 1.08994 * 109.49437 * 92.10320 * 13 11 10 36 36 H 1.09008 * 109.48940 * 332.03762 * 13 11 10 37 37 H 1.09003 * 108.51587 * 153.72948 * 14 13 11 38 38 H 1.08995 * 108.39362 * 36.14683 * 14 13 11 39 39 H 1.09007 * 109.32460 * 302.53800 * 15 14 13 40 40 H 1.08999 * 109.18849 * 182.97405 * 15 14 13 41 41 H 1.09000 * 109.45298 * 168.69698 * 16 15 14 42 42 H 1.08999 * 109.42383 * 48.76175 * 16 15 14 43 43 H 0.97002 * 119.99616 * 352.53091 * 21 20 18 44 44 H 1.09003 * 108.94652 * 78.29787 * 26 17 16 45 45 H 1.09008 * 108.94675 * 196.92366 * 26 17 16 46 46 H 1.08999 * 109.47381 * 260.23710 * 28 27 3 47 47 H 1.08999 * 109.47550 * 20.24389 * 28 27 3 48 48 H 1.09001 * 109.47043 * 140.24125 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0462 1.2110 0.0000 4 6 1.2983 2.3809 0.0005 5 7 1.8848 3.5621 0.0010 6 6 3.1955 3.6890 0.0063 7 6 4.0200 2.5635 0.0004 8 6 5.4913 2.7102 0.0009 9 8 6.1999 1.7287 0.1104 10 7 6.0466 3.9322 -0.1201 11 6 7.5044 4.0775 -0.1202 12 1 7.9512 3.2208 -0.6248 13 6 7.8813 5.3418 -0.8523 14 6 9.2259 5.1433 -1.5454 15 6 10.3932 5.4004 -0.6880 16 6 10.4211 4.4026 0.4960 17 7 9.3622 4.7241 1.4263 18 6 9.6232 5.6104 2.4370 19 1 8.8292 6.2250 2.8349 20 6 10.9084 5.7191 2.9503 21 7 11.6300 4.6370 3.1524 22 14 11.6138 7.4010 3.3541 23 1 12.9924 7.2454 3.8836 24 1 10.7625 8.0625 4.3754 25 1 11.6473 8.2320 2.1239 26 6 8.0133 4.1319 1.3354 27 6 3.4322 1.2934 -0.0005 28 6 4.2810 0.0483 -0.0021 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3632 0.5138 0.8900 32 1 0.2198 2.3226 0.0002 33 1 3.6369 4.6747 0.0109 34 1 5.4812 4.7154 -0.2079 35 1 7.9563 6.1649 -0.1418 36 1 7.1190 5.5720 -1.5968 37 1 9.2741 5.8116 -2.4052 38 1 9.2796 4.1155 -1.9039 39 1 10.3395 6.4180 -0.3010 40 1 11.3028 5.2862 -1.2776 41 1 11.3832 4.4689 1.0040 42 1 10.2785 3.3896 0.1197 43 1 11.2292 3.7600 3.0465 44 1 8.0425 3.1209 1.7418 45 1 7.3230 4.7307 1.9297 46 1 4.6301 -0.1548 1.0104 47 1 3.6889 -0.7948 -0.3582 48 1 5.1381 0.1936 -0.6596 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034273642.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:57:38 Heat of formation + Delta-G solvation = -13.711578 kcal Electronic energy + Delta-G solvation = -29255.674327 eV Core-core repulsion = 25311.770587 eV Total energy + Delta-G solvation = -3943.903740 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.27740 -39.74728 -38.37017 -37.68568 -34.96481 -33.83297 -33.49368 -31.62576 -30.80275 -29.67720 -28.06188 -27.89001 -25.90969 -24.64147 -24.14363 -22.98045 -22.34290 -20.83789 -20.09255 -19.28463 -18.44048 -17.69168 -17.15758 -16.62786 -16.54607 -16.35911 -15.84343 -15.26711 -14.76767 -14.61510 -14.43771 -13.96500 -13.71027 -13.59638 -13.48686 -13.26396 -12.96347 -12.90287 -12.87051 -12.52412 -12.42794 -12.30548 -12.05739 -11.86078 -11.69297 -11.13987 -10.72268 -10.64819 -10.43767 -10.25151 -10.14280 -10.02059 -9.99179 -9.83262 -9.72493 -9.50422 -9.42188 -8.89049 -8.78746 -8.17503 -6.84189 -6.10937 -3.18537 0.35949 0.91827 2.65467 2.77935 3.23971 3.51168 3.56534 3.57640 3.73688 4.01682 4.18506 4.44412 4.48176 4.61408 4.67567 4.69325 4.87426 4.94120 5.06949 5.10754 5.21988 5.31155 5.32786 5.50881 5.54167 5.57063 5.70806 5.81273 5.86862 5.92724 5.96870 6.03051 6.27235 6.30523 6.37225 6.44754 6.56013 6.66538 6.72075 6.77497 6.78315 6.83306 6.90475 7.17643 7.37896 7.51279 7.57714 8.12831 8.24683 8.58073 9.16625 9.87913 10.29133 11.08046 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.021080 B = 0.002598 C = 0.002575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.953965 B =10776.528376 C =10871.003778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.306 6.306 3 C 0.065 3.935 4 C 0.038 3.962 5 N -0.457 5.457 6 C 0.101 3.899 7 C -0.150 4.150 8 C 0.560 3.440 9 O -0.522 6.522 10 N -0.713 5.713 11 C 0.132 3.868 12 H 0.082 0.918 13 C -0.115 4.115 14 C -0.098 4.098 15 C -0.143 4.143 16 C 0.147 3.853 17 N -0.584 5.584 18 C -0.372 4.372 19 H 0.052 0.948 20 C -0.009 4.009 21 N -0.881 5.881 22 Si 1.040 2.960 23 H -0.287 1.287 24 H -0.293 1.293 25 H -0.293 1.293 26 C 0.143 3.857 27 C -0.012 4.012 28 C -0.111 4.111 29 H 0.058 0.942 30 H 0.104 0.896 31 H 0.058 0.942 32 H 0.162 0.838 33 H 0.162 0.838 34 H 0.396 0.604 35 H 0.082 0.918 36 H 0.054 0.946 37 H 0.046 0.954 38 H 0.047 0.953 39 H 0.065 0.935 40 H 0.047 0.953 41 H 0.075 0.925 42 H 0.024 0.976 43 H 0.270 0.730 44 H 0.018 0.982 45 H 0.050 0.950 46 H 0.082 0.918 47 H 0.066 0.934 48 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.711 -5.462 -10.213 23.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.218 6.218 3 C 0.018 3.982 4 C -0.119 4.119 5 N -0.166 5.166 6 C -0.058 4.058 7 C -0.155 4.155 8 C 0.345 3.655 9 O -0.399 6.399 10 N -0.364 5.364 11 C 0.028 3.972 12 H 0.100 0.900 13 C -0.153 4.153 14 C -0.136 4.136 15 C -0.183 4.183 16 C 0.019 3.981 17 N -0.307 5.307 18 C -0.500 4.500 19 H 0.069 0.931 20 C -0.214 4.214 21 N -0.517 5.517 22 Si 0.869 3.131 23 H -0.213 1.213 24 H -0.220 1.220 25 H -0.220 1.220 26 C 0.016 3.984 27 C -0.021 4.021 28 C -0.167 4.167 29 H 0.076 0.924 30 H 0.123 0.877 31 H 0.077 0.923 32 H 0.179 0.821 33 H 0.179 0.821 34 H 0.231 0.769 35 H 0.101 0.899 36 H 0.072 0.928 37 H 0.065 0.935 38 H 0.066 0.934 39 H 0.084 0.916 40 H 0.065 0.935 41 H 0.093 0.907 42 H 0.042 0.958 43 H 0.080 0.920 44 H 0.036 0.964 45 H 0.069 0.931 46 H 0.101 0.899 47 H 0.085 0.915 48 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -19.262 -4.877 -9.626 22.079 hybrid contribution -1.647 -0.862 -0.470 1.918 sum -20.909 -5.739 -10.096 23.918 Atomic orbital electron populations 1.23149 0.77932 1.04535 1.01574 1.86102 1.21544 1.25516 1.88606 1.19760 0.92327 0.86058 1.00104 1.23059 1.00667 0.87092 1.01122 1.67523 1.11885 1.25966 1.11245 1.22856 0.88710 0.98162 0.96083 1.20823 0.95083 0.93745 1.05859 1.17893 0.86480 0.83875 0.77226 1.90775 1.62933 1.37427 1.48791 1.46129 1.08648 1.07911 1.73729 1.21593 0.77480 0.98864 0.99309 0.90020 1.21266 0.96932 0.98024 0.99055 1.20253 0.94834 1.00539 0.97965 1.21378 0.95812 1.02900 0.98241 1.20869 0.94556 0.93392 0.89264 1.43594 1.06417 1.51210 1.29447 1.19751 0.97807 1.15832 1.16617 0.93069 1.25601 0.96031 1.03419 0.96358 1.70772 1.42018 0.99078 1.39882 0.83915 0.76288 0.76746 0.76139 1.21292 1.21978 1.21984 1.21551 0.88384 0.96595 0.91842 1.19871 0.90777 0.96020 0.95414 1.20873 0.99102 0.92354 1.04341 0.92364 0.87739 0.92316 0.82145 0.82077 0.76880 0.89905 0.92775 0.93538 0.93387 0.91616 0.93463 0.90676 0.95768 0.91970 0.96383 0.93116 0.89940 0.91495 0.88625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.11 9.82 101.05 0.99 1.11 16 2 O -0.31 -2.87 9.52 -19.48 -0.19 -3.06 16 3 C 0.06 0.71 6.68 -39.13 -0.26 0.44 16 4 C 0.04 0.37 10.21 -17.30 -0.18 0.20 16 5 N -0.46 -5.24 10.34 -12.79 -0.13 -5.38 16 6 C 0.10 1.14 10.69 -17.14 -0.18 0.96 16 7 C -0.15 -1.93 5.89 -104.84 -0.62 -2.55 16 8 C 0.56 8.44 7.68 -12.32 -0.09 8.35 16 9 O -0.52 -9.50 13.24 5.32 0.07 -9.43 16 10 N -0.71 -9.94 4.93 -55.12 -0.27 -10.21 16 11 C 0.13 2.25 2.27 -68.32 -0.15 2.09 16 12 H 0.08 1.53 6.75 -51.93 -0.35 1.18 16 13 C -0.11 -1.80 5.06 -28.02 -0.14 -1.94 16 14 C -0.10 -1.59 5.16 -29.79 -0.15 -1.75 16 15 C -0.14 -2.77 5.74 -28.58 -0.16 -2.93 16 16 C 0.15 3.36 5.17 -4.09 -0.02 3.34 16 17 N -0.58 -14.16 2.14 -171.87 -0.37 -14.53 16 18 C -0.37 -10.10 9.11 -15.06 -0.14 -10.23 16 19 H 0.05 1.43 7.99 -52.48 -0.42 1.01 16 20 C -0.01 -0.24 4.38 -17.43 -0.08 -0.32 16 21 N -0.88 -25.93 12.13 55.49 0.67 -25.26 16 22 Si 1.04 24.69 30.06 -169.99 -5.11 19.58 16 23 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 24 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 25 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 26 C 0.14 3.05 5.86 -2.76 -0.02 3.03 16 27 C -0.01 -0.15 5.97 -103.76 -0.62 -0.77 16 28 C -0.11 -1.38 8.59 36.00 0.31 -1.07 16 29 H 0.06 0.22 7.67 -51.93 -0.40 -0.18 16 30 H 0.10 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.06 0.23 7.67 -51.93 -0.40 -0.16 16 32 H 0.16 1.08 6.30 -52.48 -0.33 0.75 16 33 H 0.16 1.42 6.46 -52.48 -0.34 1.08 16 34 H 0.40 4.32 6.64 -40.82 -0.27 4.04 16 35 H 0.08 1.47 7.49 -51.93 -0.39 1.08 16 36 H 0.05 0.70 7.94 -51.92 -0.41 0.29 16 37 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.05 0.77 7.35 -51.93 -0.38 0.39 16 39 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 40 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 41 H 0.08 1.97 5.51 -51.93 -0.29 1.68 16 42 H 0.02 0.53 8.06 -51.93 -0.42 0.12 16 43 H 0.27 8.15 8.25 -40.82 -0.34 7.81 16 44 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.05 1.09 7.83 -51.92 -0.41 0.68 16 46 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 47 H 0.07 0.73 7.36 -51.93 -0.38 0.35 16 48 H 0.10 1.33 6.21 -51.93 -0.32 1.01 16 LS Contribution 376.29 15.07 5.67 5.67 Total: -1.00 -32.21 376.29 -8.34 -40.55 By element: Atomic # 1 Polarization: 11.28 SS G_CDS: -7.17 Total: 4.11 kcal Atomic # 6 Polarization: -0.53 SS G_CDS: -1.52 Total: -2.04 kcal Atomic # 7 Polarization: -55.27 SS G_CDS: -0.10 Total: -55.37 kcal Atomic # 8 Polarization: -12.37 SS G_CDS: -0.11 Total: -12.49 kcal Atomic # 14 Polarization: 24.69 SS G_CDS: -5.11 Total: 19.58 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -32.21 -8.34 -40.55 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034273642.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.838 kcal (2) G-P(sol) polarization free energy of solvation -32.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds