Wall clock time and date at job start Tue Mar 31 2020 17:57:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35917 * 117.00421 * 2 1 4 4 C 1.38860 * 120.40497 * 0.02562 * 3 2 1 5 5 N 1.31874 * 121.00109 * 179.97438 * 4 3 2 6 6 C 1.31682 * 121.94174 * 359.73176 * 5 4 3 7 7 C 1.39526 * 120.68893 * 0.53235 * 6 5 4 8 8 C 1.47857 * 120.53103 * 179.75339 * 7 6 5 9 9 O 1.21550 * 120.00152 * 173.74852 * 8 7 6 10 10 N 1.34775 * 119.99768 * 353.74814 * 8 7 6 11 11 C 1.46498 * 119.99810 * 180.02562 * 10 8 7 12 12 H 1.08995 * 109.26688 * 35.31224 * 11 10 8 13 13 C 1.50882 * 109.37064 * 154.99936 * 11 10 8 14 14 C 1.52565 * 109.36113 * 212.07738 * 13 11 10 15 15 C 1.47100 * 114.32519 * 274.98600 * 14 13 11 16 16 C 1.54859 * 110.32441 * 62.79586 * 15 14 13 17 17 N 1.44579 * 109.60184 * 288.74123 * 16 15 14 18 18 C 1.36936 * 118.63871 * 270.70192 * 17 16 15 19 19 H 1.08007 * 120.00267 * 150.63876 * 18 17 16 20 20 C 1.38811 * 120.00195 * 330.63443 * 18 17 16 21 21 N 1.31623 * 120.00074 * 318.79945 * 20 18 17 22 22 Si 1.86805 * 120.00104 * 138.79883 * 20 18 17 23 23 H 1.48494 * 109.47010 * 180.02562 * 22 20 18 24 24 H 1.48504 * 109.46709 * 60.00107 * 22 20 18 25 25 H 1.48494 * 109.46869 * 300.00324 * 22 20 18 26 26 C 1.47599 * 122.71550 * 90.98230 * 17 16 15 27 27 C 1.38844 * 120.40830 * 180.02562 * 3 2 1 28 28 C 1.50695 * 120.87692 * 0.04148 * 27 3 2 29 29 H 1.08992 * 109.46921 * 59.99302 * 1 2 3 30 30 H 1.08994 * 109.47049 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.46217 * 299.99671 * 1 2 3 32 32 H 1.08005 * 119.49559 * 359.95609 * 4 3 2 33 33 H 1.08003 * 119.65829 * 180.26778 * 6 5 4 34 34 H 0.96998 * 120.00180 * 359.97438 * 10 8 7 35 35 H 1.08994 * 109.49437 * 92.10320 * 13 11 10 36 36 H 1.09008 * 109.48940 * 332.03762 * 13 11 10 37 37 H 1.09003 * 108.51587 * 153.72948 * 14 13 11 38 38 H 1.08995 * 108.39362 * 36.14683 * 14 13 11 39 39 H 1.09007 * 109.32460 * 302.53800 * 15 14 13 40 40 H 1.08999 * 109.18849 * 182.97405 * 15 14 13 41 41 H 1.09000 * 109.45298 * 168.69698 * 16 15 14 42 42 H 1.08999 * 109.42383 * 48.76175 * 16 15 14 43 43 H 0.97002 * 119.99616 * 352.53091 * 21 20 18 44 44 H 1.09003 * 108.94652 * 78.29787 * 26 17 16 45 45 H 1.09008 * 108.94675 * 196.92366 * 26 17 16 46 46 H 1.08999 * 109.47381 * 260.23710 * 28 27 3 47 47 H 1.08999 * 109.47550 * 20.24389 * 28 27 3 48 48 H 1.09001 * 109.47043 * 140.24125 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0462 1.2110 0.0000 4 6 1.2983 2.3809 0.0005 5 7 1.8848 3.5621 0.0010 6 6 3.1955 3.6890 0.0063 7 6 4.0200 2.5635 0.0004 8 6 5.4913 2.7102 0.0009 9 8 6.1999 1.7287 0.1104 10 7 6.0466 3.9322 -0.1201 11 6 7.5044 4.0775 -0.1202 12 1 7.9512 3.2208 -0.6248 13 6 7.8813 5.3418 -0.8523 14 6 9.2259 5.1433 -1.5454 15 6 10.3932 5.4004 -0.6880 16 6 10.4211 4.4026 0.4960 17 7 9.3622 4.7241 1.4263 18 6 9.6232 5.6104 2.4370 19 1 8.8292 6.2250 2.8349 20 6 10.9084 5.7191 2.9503 21 7 11.6300 4.6370 3.1524 22 14 11.6138 7.4010 3.3541 23 1 12.9924 7.2454 3.8836 24 1 10.7625 8.0625 4.3754 25 1 11.6473 8.2320 2.1239 26 6 8.0133 4.1319 1.3354 27 6 3.4322 1.2934 -0.0005 28 6 4.2810 0.0483 -0.0021 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3632 0.5138 0.8900 32 1 0.2198 2.3226 0.0002 33 1 3.6369 4.6747 0.0109 34 1 5.4812 4.7154 -0.2079 35 1 7.9563 6.1649 -0.1418 36 1 7.1190 5.5720 -1.5968 37 1 9.2741 5.8116 -2.4052 38 1 9.2796 4.1155 -1.9039 39 1 10.3395 6.4180 -0.3010 40 1 11.3028 5.2862 -1.2776 41 1 11.3832 4.4689 1.0040 42 1 10.2785 3.3896 0.1197 43 1 11.2292 3.7600 3.0465 44 1 8.0425 3.1209 1.7418 45 1 7.3230 4.7307 1.9297 46 1 4.6301 -0.1548 1.0104 47 1 3.6889 -0.7948 -0.3582 48 1 5.1381 0.1936 -0.6596 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034273642.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:57:37 Heat of formation + Delta-G solvation = -34.658027 kcal Electronic energy + Delta-G solvation = -29256.582633 eV Core-core repulsion = 25311.770587 eV Total energy + Delta-G solvation = -3944.812046 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.18085 -40.89735 -39.50820 -38.87240 -36.50208 -35.15623 -34.72791 -33.08230 -32.41446 -30.91305 -28.92675 -28.49999 -27.72067 -26.17093 -25.42155 -24.39652 -23.38111 -22.10387 -21.40501 -20.98048 -19.36539 -19.16969 -18.55138 -17.63968 -17.41120 -17.15654 -16.98762 -16.69150 -16.26387 -15.89961 -15.61579 -15.50109 -15.18132 -15.00411 -14.66756 -14.45020 -14.18363 -14.03642 -13.96105 -13.90389 -13.80934 -13.37284 -13.17333 -12.79262 -12.71992 -12.54905 -12.39806 -12.38691 -12.09433 -11.89902 -11.80438 -11.60846 -11.41275 -11.27054 -11.23971 -10.72453 -10.55854 -10.38913 -10.05473 -9.56053 -8.91061 -8.25729 -5.34304 -0.55466 0.05224 1.59498 1.65287 1.69230 1.80988 1.85862 2.26697 2.63812 2.68181 3.06561 3.22540 3.38434 3.52479 3.58088 3.63465 3.83376 3.93524 4.00606 4.07387 4.17373 4.28396 4.34199 4.34614 4.39552 4.49629 4.51397 4.60309 4.66181 4.71510 4.76362 4.81055 4.95004 4.98392 5.01558 5.03664 5.12280 5.24390 5.27315 5.34098 5.36803 5.42661 5.53879 5.63285 5.96193 6.11613 6.33104 6.42677 6.68098 7.06525 7.12734 7.83672 8.21377 8.86280 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.021080 B = 0.002598 C = 0.002575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.953965 B =10776.528376 C =10871.003778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.320 6.320 3 C 0.069 3.931 4 C 0.048 3.952 5 N -0.467 5.467 6 C 0.104 3.896 7 C -0.163 4.163 8 C 0.559 3.441 9 O -0.561 6.561 10 N -0.701 5.701 11 C 0.151 3.849 12 H 0.066 0.934 13 C -0.107 4.107 14 C -0.099 4.099 15 C -0.130 4.130 16 C 0.146 3.854 17 N -0.594 5.594 18 C -0.373 4.373 19 H 0.043 0.957 20 C -0.058 4.058 21 N -0.908 5.908 22 Si 1.093 2.907 23 H -0.295 1.295 24 H -0.278 1.278 25 H -0.276 1.276 26 C 0.147 3.853 27 C -0.034 4.034 28 C -0.102 4.102 29 H 0.074 0.926 30 H 0.123 0.877 31 H 0.071 0.929 32 H 0.196 0.804 33 H 0.185 0.815 34 H 0.414 0.586 35 H 0.064 0.936 36 H 0.094 0.906 37 H 0.079 0.921 38 H 0.052 0.948 39 H 0.049 0.951 40 H 0.063 0.937 41 H 0.040 0.960 42 H 0.022 0.978 43 H 0.250 0.750 44 H -0.018 1.018 45 H 0.045 0.955 46 H 0.068 0.932 47 H 0.080 0.920 48 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.519 -3.768 -12.017 26.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.233 6.233 3 C 0.021 3.979 4 C -0.110 4.110 5 N -0.176 5.176 6 C -0.054 4.054 7 C -0.168 4.168 8 C 0.346 3.654 9 O -0.441 6.441 10 N -0.353 5.353 11 C 0.046 3.954 12 H 0.084 0.916 13 C -0.145 4.145 14 C -0.137 4.137 15 C -0.170 4.170 16 C 0.019 3.981 17 N -0.317 5.317 18 C -0.502 4.502 19 H 0.061 0.939 20 C -0.258 4.258 21 N -0.546 5.546 22 Si 0.918 3.082 23 H -0.221 1.221 24 H -0.204 1.204 25 H -0.202 1.202 26 C 0.020 3.980 27 C -0.043 4.043 28 C -0.159 4.159 29 H 0.092 0.908 30 H 0.141 0.859 31 H 0.089 0.911 32 H 0.213 0.787 33 H 0.201 0.799 34 H 0.253 0.747 35 H 0.083 0.917 36 H 0.113 0.887 37 H 0.098 0.902 38 H 0.070 0.930 39 H 0.068 0.932 40 H 0.082 0.918 41 H 0.058 0.942 42 H 0.040 0.960 43 H 0.059 0.941 44 H 0.000 1.000 45 H 0.064 0.936 46 H 0.086 0.914 47 H 0.098 0.902 48 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -22.125 -3.160 -11.458 25.115 hybrid contribution -0.929 -1.536 0.132 1.800 sum -23.054 -4.696 -11.326 26.111 Atomic orbital electron populations 1.23521 0.75466 1.06366 1.02941 1.86098 1.24064 1.24846 1.88253 1.19744 0.91648 0.87098 0.99441 1.23608 1.02193 0.86205 0.98966 1.67630 1.11703 1.26623 1.11661 1.23143 0.88686 0.98451 0.95150 1.20630 0.93502 0.94712 1.07935 1.18296 0.87495 0.83451 0.76119 1.90766 1.64085 1.38738 1.50479 1.45908 1.07501 1.08557 1.73344 1.21134 0.79064 0.99376 0.95867 0.91589 1.21214 0.97956 0.95943 0.99340 1.20241 0.93524 1.01665 0.98268 1.21220 0.98414 1.00275 0.97049 1.20851 0.92451 0.94597 0.90199 1.43762 1.07613 1.51046 1.29280 1.19908 0.97707 1.15703 1.16846 0.93946 1.26904 0.96805 1.05630 0.96419 1.70917 1.42184 0.98698 1.42794 0.83184 0.75229 0.72899 0.76867 1.22124 1.20352 1.20203 1.21559 0.87287 0.94063 0.95051 1.20002 0.92024 0.95761 0.96538 1.20719 0.98728 0.93354 1.03056 0.90751 0.85904 0.91052 0.78718 0.79869 0.74723 0.91679 0.88718 0.90198 0.92979 0.93248 0.91801 0.94213 0.95979 0.94100 0.99983 0.93609 0.91374 0.90160 0.90520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.07 9.82 113.37 1.11 1.19 16 2 O -0.32 -5.38 9.52 -92.61 -0.88 -6.26 16 3 C 0.07 1.37 6.68 22.56 0.15 1.52 16 4 C 0.05 0.80 10.21 84.84 0.87 1.67 16 5 N -0.47 -9.44 10.34 -194.38 -2.01 -11.45 16 6 C 0.10 2.14 10.69 85.03 0.91 3.05 16 7 C -0.16 -4.10 5.89 -20.01 -0.12 -4.21 16 8 C 0.56 17.02 7.68 86.79 0.67 17.69 16 9 O -0.56 -21.42 13.24 -3.87 -0.05 -21.47 16 10 N -0.70 -18.95 4.93 -446.60 -2.20 -21.15 16 11 C 0.15 5.11 2.27 44.74 0.10 5.21 16 12 H 0.07 2.49 6.75 -2.39 -0.02 2.47 16 13 C -0.11 -3.10 5.06 29.76 0.15 -2.95 16 14 C -0.10 -2.98 5.16 28.62 0.15 -2.83 16 15 C -0.13 -4.90 5.74 29.39 0.17 -4.73 16 16 C 0.15 6.90 5.17 87.37 0.45 7.35 16 17 N -0.59 -29.75 2.14 -697.68 -1.49 -31.24 16 18 C -0.37 -20.73 9.11 84.03 0.77 -19.96 16 19 H 0.04 2.41 7.99 -2.91 -0.02 2.39 16 20 C -0.06 -3.26 4.38 84.86 0.37 -2.89 16 21 N -0.91 -55.55 12.13 21.65 0.26 -55.28 16 22 Si 1.09 50.36 30.06 68.60 2.06 52.42 16 23 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 24 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 25 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 26 C 0.15 6.49 5.86 86.61 0.51 7.00 16 27 C -0.03 -0.86 5.97 -19.31 -0.12 -0.97 16 28 C -0.10 -2.67 8.59 71.23 0.61 -2.05 16 29 H 0.07 0.29 7.67 -2.39 -0.02 0.27 16 30 H 0.12 0.39 8.14 -2.39 -0.02 0.37 16 31 H 0.07 0.32 7.67 -2.39 -0.02 0.31 16 32 H 0.20 1.80 6.30 -2.91 -0.02 1.78 16 33 H 0.18 2.71 6.46 -2.91 -0.02 2.70 16 34 H 0.41 8.10 6.64 -92.71 -0.62 7.49 16 35 H 0.06 2.19 7.49 -2.39 -0.02 2.17 16 36 H 0.09 2.04 7.94 -2.38 -0.02 2.02 16 37 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 38 H 0.05 1.55 7.35 -2.39 -0.02 1.53 16 39 H 0.05 2.02 8.14 -2.38 -0.02 2.00 16 40 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 41 H 0.04 2.18 5.51 -2.39 -0.01 2.16 16 42 H 0.02 1.02 8.06 -2.39 -0.02 1.00 16 43 H 0.25 15.97 8.25 -92.71 -0.76 15.20 16 44 H -0.02 -0.90 8.14 -2.39 -0.02 -0.92 16 45 H 0.05 2.03 7.83 -2.38 -0.02 2.01 16 46 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 47 H 0.08 1.78 7.36 -2.39 -0.02 1.77 16 48 H 0.08 2.27 6.21 -2.39 -0.01 2.26 16 Total: -1.00 -73.91 376.29 2.81 -71.11 By element: Atomic # 1 Polarization: 18.88 SS G_CDS: 0.37 Total: 19.26 kcal Atomic # 6 Polarization: -2.67 SS G_CDS: 6.75 Total: 4.08 kcal Atomic # 7 Polarization: -113.69 SS G_CDS: -5.44 Total: -119.13 kcal Atomic # 8 Polarization: -26.80 SS G_CDS: -0.93 Total: -27.73 kcal Atomic # 14 Polarization: 50.36 SS G_CDS: 2.06 Total: 52.42 kcal Total: -73.91 2.81 -71.11 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034273642.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.449 kcal (2) G-P(sol) polarization free energy of solvation -73.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds