Wall clock time and date at job start Tue Mar 31 2020 17:46:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38361 * 119.40813 * 2 1 4 4 C 1.38334 * 119.45893 * 180.02562 * 3 2 1 5 5 C 1.50695 * 120.82453 * 180.02562 * 4 3 2 6 6 C 1.39990 * 118.34864 * 359.97438 * 4 3 2 7 7 C 1.47525 * 120.59483 * 180.02562 * 6 4 3 8 8 O 1.21593 * 120.00139 * 90.00332 * 7 6 4 9 9 N 1.34776 * 119.99771 * 269.99874 * 7 6 4 10 10 C 1.46499 * 119.99869 * 180.02562 * 9 7 6 11 11 H 1.08999 * 109.33030 * 34.65050 * 10 9 7 12 12 C 1.47092 * 109.33236 * 154.13393 * 10 9 7 13 13 C 1.52562 * 114.32995 * 183.06320 * 12 10 9 14 14 C 1.50881 * 109.35788 * 274.98951 * 13 12 10 15 15 C 1.54303 * 110.23667 * 91.79844 * 14 13 12 16 16 N 1.47601 * 111.93799 * 319.70127 * 15 14 13 17 17 C 1.36932 * 118.63947 * 137.78211 * 16 15 14 18 18 H 1.08005 * 120.00004 * 206.69253 * 17 16 15 19 19 C 1.38808 * 120.00321 * 26.69182 * 17 16 15 20 20 N 1.31617 * 119.99979 * 17.12102 * 19 17 16 21 21 Si 1.86800 * 120.00165 * 197.11760 * 19 17 16 22 22 H 1.48502 * 109.47302 * 265.32813 * 21 19 17 23 23 H 1.48497 * 109.47372 * 145.32795 * 21 19 17 24 24 H 1.48500 * 109.47305 * 25.32646 * 21 19 17 25 25 C 1.44581 * 122.71481 * 317.49281 * 16 15 14 26 26 C 1.40284 * 118.80688 * 0.28090 * 6 4 3 27 27 O 1.35422 * 119.79981 * 179.70394 * 26 6 4 28 28 N 1.31881 * 119.40619 * 180.02562 * 2 1 3 29 29 H 1.09000 * 109.47454 * 90.00243 * 1 2 3 30 30 H 1.09004 * 109.47366 * 209.99785 * 1 2 3 31 31 H 1.09000 * 109.47571 * 330.00156 * 1 2 3 32 32 H 1.07993 * 120.26709 * 0.02562 * 3 2 1 33 33 H 1.08998 * 109.47204 * 269.97403 * 5 4 3 34 34 H 1.08996 * 109.47559 * 29.97147 * 5 4 3 35 35 H 1.09003 * 109.47523 * 149.97640 * 5 4 3 36 36 H 0.96993 * 120.00193 * 0.02562 * 9 7 6 37 37 H 1.09006 * 108.51136 * 304.32052 * 12 10 9 38 38 H 1.08999 * 108.50778 * 61.96179 * 12 10 9 39 39 H 1.08996 * 109.48958 * 34.95146 * 13 12 10 40 40 H 1.09000 * 109.48949 * 155.00159 * 13 12 10 41 41 H 1.09001 * 109.36673 * 212.07665 * 14 13 12 42 42 H 1.09000 * 109.36622 * 331.69147 * 14 13 12 43 43 H 1.08999 * 109.13374 * 199.01185 * 15 14 13 44 44 H 1.09000 * 108.95827 * 80.26694 * 15 14 13 45 45 H 0.97003 * 120.00080 * 180.02562 * 20 19 17 46 46 H 1.08999 * 109.45151 * 211.03235 * 25 16 15 47 47 H 1.09003 * 109.44665 * 330.97924 * 25 16 15 48 48 H 0.96701 * 113.99917 * 89.99569 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1863 1.2053 0.0000 4 6 3.5697 1.2066 -0.0005 5 6 4.3407 2.5013 0.0000 6 6 4.2355 -0.0249 -0.0005 7 6 5.7097 -0.0814 -0.0005 8 8 6.3172 -0.1047 1.0525 9 7 6.3830 -0.1072 -1.1677 10 6 7.8469 -0.1639 -1.1677 11 1 8.1848 -0.7624 -0.3217 12 6 8.3100 -0.7876 -2.4168 13 6 9.8220 -0.9714 -2.5046 14 6 10.4515 0.3008 -3.0162 15 6 10.8524 1.2102 -1.8358 16 7 9.8339 1.2080 -0.7675 17 6 10.2500 1.1498 0.5358 18 1 9.6044 0.7252 1.2904 19 6 11.5016 1.6366 0.8872 20 7 12.1463 2.4440 0.0720 21 14 12.2707 1.1457 2.5172 22 1 11.9659 2.1788 3.5395 23 1 13.7422 1.0288 2.3550 24 1 11.7155 -0.1608 2.9531 25 6 8.4154 1.2709 -1.0400 26 6 3.4757 -1.2041 -0.0060 27 8 4.0991 -2.4063 -0.0121 28 7 2.1545 -1.1489 -0.0005 29 1 -0.3634 0.0000 -1.0276 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3634 0.8900 0.5138 32 1 1.6411 2.1375 0.0004 33 1 4.5266 2.8139 -1.0275 34 1 3.7620 3.2687 0.5141 35 1 5.2913 2.3580 0.5138 36 1 5.8984 -0.0883 -2.0077 37 1 7.8365 -1.7648 -2.5120 38 1 7.9899 -0.1663 -3.2532 39 1 10.2185 -1.2011 -1.5156 40 1 10.0498 -1.7902 -3.1870 41 1 11.3382 0.0556 -3.6009 42 1 9.7379 0.8281 -3.6493 43 1 10.9828 2.2297 -2.1985 44 1 11.7984 0.8591 -1.4237 45 1 13.0211 2.7839 0.3174 46 1 7.9118 1.7897 -0.2244 47 1 8.2485 1.8113 -1.9718 48 1 4.2805 -2.7598 0.8695 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034337760.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:46:45 Heat of formation + Delta-G solvation = -51.795083 kcal Electronic energy + Delta-G solvation = -29740.356147 eV Core-core repulsion = 25794.800983 eV Total energy + Delta-G solvation = -3945.555164 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.06971 -40.65877 -39.14284 -38.43112 -36.24798 -35.29203 -34.80167 -32.95824 -32.79181 -31.65408 -29.37164 -28.46650 -27.84571 -25.94399 -25.07233 -24.29326 -22.84156 -21.68035 -21.53063 -20.86609 -19.52009 -18.83611 -18.61909 -18.22042 -17.63010 -16.77277 -16.57435 -16.46467 -15.94799 -15.63520 -15.29990 -15.06455 -14.94908 -14.74674 -14.28975 -14.23159 -14.18801 -13.97126 -13.90016 -13.84779 -13.25147 -13.12404 -13.03900 -12.96745 -12.85789 -12.83010 -12.63518 -12.48927 -12.37611 -12.05812 -11.68611 -11.50201 -11.39831 -11.31777 -11.17297 -10.64422 -10.56904 -10.46378 -10.18197 -9.86864 -8.65430 -7.89369 -5.34383 -0.30441 0.01863 1.39951 1.41828 1.45132 1.53084 2.05683 2.26532 2.49873 2.64422 3.23339 3.39941 3.53920 3.61132 3.73838 3.88579 3.97732 4.09201 4.17634 4.24007 4.28628 4.40425 4.49352 4.51382 4.56720 4.63736 4.68980 4.73340 4.83174 4.95962 4.97326 5.00060 5.04149 5.07595 5.13959 5.18338 5.21195 5.24621 5.32988 5.38659 5.51424 5.61000 5.61814 5.69488 5.80943 6.37911 6.38939 6.47959 6.78265 7.16538 7.17509 7.92980 8.28357 9.15038 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.015872 B = 0.003248 C = 0.003048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1763.712439 B = 8618.295256 C = 9183.726645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.161 3.839 3 C -0.174 4.174 4 C 0.008 3.992 5 C -0.125 4.125 6 C -0.219 4.219 7 C 0.576 3.424 8 O -0.576 6.576 9 N -0.695 5.695 10 C 0.134 3.866 11 H 0.046 0.954 12 C -0.109 4.109 13 C -0.097 4.097 14 C -0.130 4.130 15 C 0.184 3.816 16 N -0.596 5.596 17 C -0.263 4.263 18 H 0.047 0.953 19 C -0.040 4.040 20 N -0.928 5.928 21 Si 0.955 3.045 22 H -0.287 1.287 23 H -0.284 1.284 24 H -0.279 1.279 25 C 0.163 3.837 26 C 0.342 3.658 27 O -0.489 6.489 28 N -0.527 5.527 29 H 0.098 0.902 30 H 0.075 0.925 31 H 0.107 0.893 32 H 0.184 0.816 33 H 0.100 0.900 34 H 0.107 0.893 35 H 0.043 0.957 36 H 0.410 0.590 37 H 0.070 0.930 38 H 0.080 0.920 39 H 0.039 0.961 40 H 0.082 0.918 41 H 0.071 0.929 42 H 0.066 0.934 43 H -0.002 1.002 44 H 0.038 0.962 45 H 0.251 0.749 46 H 0.017 0.983 47 H 0.051 0.949 48 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.983 -3.388 -7.030 24.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.024 3.976 3 C -0.193 4.193 4 C 0.000 4.000 5 C -0.181 4.181 6 C -0.225 4.225 7 C 0.361 3.639 8 O -0.455 6.455 9 N -0.345 5.345 10 C 0.027 3.973 11 H 0.064 0.936 12 C -0.147 4.147 13 C -0.135 4.135 14 C -0.169 4.169 15 C 0.060 3.940 16 N -0.317 5.317 17 C -0.393 4.393 18 H 0.065 0.935 19 C -0.236 4.236 20 N -0.574 5.574 21 Si 0.783 3.217 22 H -0.213 1.213 23 H -0.210 1.210 24 H -0.204 1.204 25 C 0.034 3.966 26 C 0.163 3.837 27 O -0.299 6.299 28 N -0.248 5.248 29 H 0.116 0.884 30 H 0.094 0.906 31 H 0.126 0.874 32 H 0.201 0.799 33 H 0.118 0.882 34 H 0.126 0.874 35 H 0.062 0.938 36 H 0.247 0.753 37 H 0.089 0.911 38 H 0.099 0.901 39 H 0.058 0.942 40 H 0.101 0.899 41 H 0.090 0.910 42 H 0.085 0.915 43 H 0.016 0.984 44 H 0.057 0.943 45 H 0.060 0.940 46 H 0.036 0.964 47 H 0.069 0.931 48 H 0.278 0.722 Dipole moment (debyes) X Y Z Total from point charges -22.799 -4.083 -6.896 24.166 hybrid contribution 1.464 0.373 1.428 2.079 sum -21.334 -3.710 -5.469 22.334 Atomic orbital electron populations 1.20929 0.85302 1.05062 1.04757 1.21910 0.98750 0.86644 0.90325 1.22164 0.92540 1.01014 1.03610 1.20534 0.94792 0.93642 0.91005 1.20990 0.99304 0.93329 1.04487 1.20843 0.93438 0.95423 1.12832 1.18127 0.86815 0.75050 0.83911 1.90854 1.70466 1.51290 1.32926 1.45947 1.07125 1.73209 1.08233 1.20800 0.78041 0.99357 0.99129 0.93594 1.20529 0.96837 1.01047 0.96309 1.20793 0.94141 0.97662 1.00910 1.21991 1.00984 0.96389 0.97526 1.20933 0.91108 0.94984 0.86994 1.43713 1.00465 1.85158 1.02405 1.19306 1.00754 1.32697 0.86576 0.93538 1.25602 0.99857 0.97505 1.00618 1.70206 1.14941 1.33571 1.38699 0.85463 0.77686 0.78055 0.80501 1.21349 1.20967 1.20426 1.20943 0.84411 0.93501 0.97752 1.19074 0.86789 0.84344 0.93490 1.84619 1.76871 1.32767 1.35628 1.67136 1.08556 1.31947 1.17130 0.88408 0.90565 0.87441 0.79862 0.88168 0.87419 0.93772 0.75347 0.91148 0.90149 0.94177 0.89914 0.90987 0.91539 0.98367 0.94345 0.94026 0.96442 0.93100 0.72171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.93 10.16 71.23 0.72 -0.21 16 2 C 0.16 2.81 6.78 42.58 0.29 3.10 16 3 C -0.17 -2.70 9.41 22.32 0.21 -2.49 16 4 C 0.01 0.18 5.95 -19.42 -0.12 0.06 16 5 C -0.12 -2.52 9.69 71.23 0.69 -1.83 16 6 C -0.22 -6.06 5.66 -19.91 -0.11 -6.17 16 7 C 0.58 19.80 5.38 86.69 0.47 20.26 16 8 O -0.58 -25.91 16.76 -4.01 -0.07 -25.98 16 9 N -0.70 -21.22 5.05 -451.46 -2.28 -23.50 16 10 C 0.13 4.90 2.34 43.79 0.10 5.00 16 11 H 0.05 2.11 7.56 -2.39 -0.02 2.09 16 12 C -0.11 -3.22 4.55 28.61 0.13 -3.09 16 13 C -0.10 -3.15 5.51 29.76 0.16 -2.99 16 14 C -0.13 -4.53 5.71 30.35 0.17 -4.36 16 15 C 0.18 8.86 4.71 86.61 0.41 9.26 16 16 N -0.60 -30.53 2.26 -697.67 -1.58 -32.10 16 17 C -0.26 -15.38 9.43 84.03 0.79 -14.59 16 18 H 0.05 2.88 7.89 -2.91 -0.02 2.86 16 19 C -0.04 -2.33 4.83 84.86 0.41 -1.92 16 20 N -0.93 -55.79 11.12 21.65 0.24 -55.55 16 21 Si 0.95 47.54 29.59 68.60 2.03 49.57 16 22 H -0.29 -14.13 7.11 99.48 0.71 -13.42 16 23 H -0.28 -13.74 7.11 99.48 0.71 -13.04 16 24 H -0.28 -13.79 7.11 99.48 0.71 -13.08 16 25 C 0.16 7.03 5.24 87.38 0.46 7.49 16 26 C 0.34 9.20 7.77 85.13 0.66 9.86 16 27 O -0.49 -12.83 13.01 -87.17 -1.13 -13.96 16 28 N -0.53 -12.73 10.28 -296.06 -3.04 -15.78 16 29 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.08 0.79 8.14 -2.38 -0.02 0.77 16 31 H 0.11 0.40 8.07 -2.39 -0.02 0.38 16 32 H 0.18 1.32 8.06 -2.91 -0.02 1.29 16 33 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 34 H 0.11 1.53 8.10 -2.39 -0.02 1.51 16 35 H 0.04 1.25 7.19 -2.39 -0.02 1.24 16 36 H 0.41 9.72 8.57 -92.71 -0.79 8.93 16 37 H 0.07 1.83 8.14 -2.38 -0.02 1.82 16 38 H 0.08 1.99 7.35 -2.39 -0.02 1.98 16 39 H 0.04 1.62 7.49 -2.39 -0.02 1.60 16 40 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 41 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 42 H 0.07 2.05 7.31 -2.39 -0.02 2.03 16 43 H 0.00 -0.09 8.03 -2.39 -0.02 -0.11 16 44 H 0.04 2.09 6.39 -2.39 -0.02 2.07 16 45 H 0.25 14.53 8.31 -92.71 -0.77 13.76 16 46 H 0.02 0.84 7.98 -2.39 -0.02 0.82 16 47 H 0.05 1.98 8.06 -2.39 -0.02 1.96 16 48 H 0.42 8.17 9.06 -74.06 -0.67 7.50 16 Total: -1.00 -79.42 386.78 -0.86 -80.28 By element: Atomic # 1 Polarization: 20.10 SS G_CDS: -0.48 Total: 19.62 kcal Atomic # 6 Polarization: 11.95 SS G_CDS: 5.45 Total: 17.40 kcal Atomic # 7 Polarization: -120.27 SS G_CDS: -6.66 Total: -126.93 kcal Atomic # 8 Polarization: -38.74 SS G_CDS: -1.20 Total: -39.94 kcal Atomic # 14 Polarization: 47.54 SS G_CDS: 2.03 Total: 49.57 kcal Total: -79.42 -0.86 -80.28 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034337760.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.486 kcal (2) G-P(sol) polarization free energy of solvation -79.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds