Wall clock time and date at job start Tue Mar 31 2020 17:46:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37999 * 120.82224 * 2 1 4 4 C 1.39120 * 119.26866 * 180.27467 * 3 2 1 5 5 O 1.35498 * 119.52619 * 179.72412 * 4 3 2 6 6 N 1.32441 * 120.94494 * 359.69723 * 4 3 2 7 7 C 1.31631 * 121.80132 * 0.02811 * 6 4 3 8 8 C 1.50701 * 119.68340 * 180.02562 * 7 6 4 9 9 C 1.39557 * 120.62801 * 359.97438 * 7 6 4 10 10 C 1.47618 * 120.49975 * 179.97438 * 9 7 6 11 11 O 1.21582 * 120.00082 * 90.00006 * 10 9 7 12 12 N 1.34775 * 120.00184 * 269.99743 * 10 9 7 13 13 C 1.46497 * 120.00320 * 180.02562 * 12 10 9 14 14 H 1.08994 * 109.26026 * 35.32155 * 13 12 10 15 15 C 1.50878 * 109.36749 * 155.00399 * 13 12 10 16 16 C 1.52570 * 109.35827 * 212.07765 * 15 13 12 17 17 C 1.47092 * 114.32633 * 274.98606 * 16 15 13 18 18 C 1.54868 * 110.32051 * 62.79962 * 17 16 15 19 19 N 1.44580 * 109.60245 * 288.73369 * 18 17 16 20 20 C 1.36929 * 118.64288 * 270.70770 * 19 18 17 21 21 H 1.07994 * 120.00435 * 145.31796 * 20 19 18 22 22 C 1.38817 * 120.00059 * 325.31304 * 20 19 18 23 23 N 1.31618 * 120.00131 * 330.03635 * 22 20 19 24 24 Si 1.86804 * 120.00087 * 150.03072 * 22 20 19 25 25 H 1.48494 * 109.47295 * 180.02562 * 24 22 20 26 26 H 1.48496 * 109.46756 * 60.00295 * 24 22 20 27 27 H 1.48501 * 109.46873 * 300.00491 * 24 22 20 28 28 C 1.47596 * 122.70933 * 90.98220 * 19 18 17 29 29 H 1.08995 * 109.47216 * 270.26960 * 1 2 3 30 30 H 1.08998 * 109.47325 * 30.27496 * 1 2 3 31 31 H 1.09002 * 109.46615 * 150.27051 * 1 2 3 32 32 H 1.08006 * 120.36288 * 0.02562 * 3 2 1 33 33 H 0.96698 * 114.00148 * 269.97678 * 5 4 3 34 34 H 1.09003 * 109.46834 * 269.97061 * 8 7 6 35 35 H 1.08993 * 109.47622 * 29.97902 * 8 7 6 36 36 H 1.09005 * 109.46721 * 149.97720 * 8 7 6 37 37 H 0.97003 * 119.99466 * 0.02562 * 12 10 9 38 38 H 1.08995 * 109.49363 * 92.10816 * 15 13 12 39 39 H 1.08997 * 109.49112 * 332.04358 * 15 13 12 40 40 H 1.09000 * 108.51222 * 153.73021 * 16 15 13 41 41 H 1.09006 * 108.39117 * 36.15093 * 16 15 13 42 42 H 1.08991 * 109.32672 * 302.54019 * 17 16 15 43 43 H 1.09002 * 109.18810 * 182.97416 * 17 16 15 44 44 H 1.09001 * 109.44591 * 168.69299 * 18 17 16 45 45 H 1.09006 * 109.42502 * 48.76113 * 18 17 16 46 46 H 0.97003 * 119.99901 * 355.10821 * 23 22 20 47 47 H 1.09007 * 108.94966 * 78.29928 * 28 19 18 48 48 H 1.09000 * 108.94673 * 196.92218 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2141 1.1851 0.0000 4 6 3.6047 1.1474 -0.0058 5 8 4.3042 2.3078 -0.0115 6 7 4.2547 -0.0066 -0.0053 7 6 3.6205 -1.1600 0.0001 8 6 4.4081 -2.4448 0.0010 9 6 2.2256 -1.2043 0.0061 10 6 1.5172 -2.4994 0.0116 11 8 1.2299 -3.0307 1.0668 12 7 1.1888 -3.0929 -1.1531 13 6 0.4853 -4.3779 -1.1476 14 1 -0.2057 -4.4058 -0.3052 15 6 -0.2878 -4.5304 -2.4343 16 6 -1.5545 -5.3389 -2.1703 17 6 -1.3640 -6.7966 -2.2185 18 6 -0.3830 -7.2478 -1.1084 19 7 0.9567 -6.8178 -1.4409 20 6 1.7464 -7.6495 -2.1890 21 1 2.4443 -7.2352 -2.9014 22 6 1.6498 -9.0254 -2.0318 23 7 1.3081 -9.5321 -0.8661 24 14 2.0048 -10.1576 -3.4745 25 1 1.8322 -11.5699 -3.0496 26 1 3.3998 -9.9465 -3.9378 27 1 1.0640 -9.8562 -4.5833 28 6 1.5104 -5.5219 -1.0022 29 1 -0.3633 0.0048 1.0276 30 1 -0.3634 0.8875 -0.5181 31 1 -0.3632 -0.8924 -0.5096 32 1 1.6935 2.1314 0.0004 33 1 4.5038 2.6424 -0.8965 34 1 4.5940 -2.7576 -1.0265 35 1 5.3586 -2.2880 0.5107 36 1 3.8411 -3.2181 0.5193 37 1 1.4183 -2.6691 -1.9949 38 1 0.3279 -5.0488 -3.1693 39 1 -0.5577 -3.5456 -2.8154 40 1 -2.3024 -5.0628 -2.9136 41 1 -1.9336 -5.0718 -1.1838 42 1 -0.9605 -7.0757 -3.1918 43 1 -2.3256 -7.2886 -2.0721 44 1 -0.4051 -8.3343 -1.0243 45 1 -0.6814 -6.8040 -0.1586 46 1 1.1929 -8.9497 -0.0990 47 1 1.8116 -5.6010 0.0424 48 1 2.3882 -5.2897 -1.6052 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034537692.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:46:40 Heat of formation + Delta-G solvation = -28.856770 kcal Electronic energy + Delta-G solvation = -29654.478037 eV Core-core repulsion = 25709.917553 eV Total energy + Delta-G solvation = -3944.560484 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.18769 -39.60421 -37.99591 -37.27289 -34.80670 -34.60215 -33.51340 -32.14905 -30.94987 -29.92387 -28.38147 -27.90236 -25.93075 -24.60040 -24.04687 -22.78326 -21.60785 -20.82335 -20.16665 -19.28013 -18.72958 -17.72389 -17.46957 -17.23016 -16.25865 -15.90640 -15.14446 -14.98646 -14.42904 -14.25707 -14.09980 -13.90765 -13.70134 -13.61555 -13.57222 -13.39366 -13.08303 -12.95175 -12.54399 -12.50091 -12.38003 -12.31491 -12.13364 -11.90976 -11.78576 -11.24907 -10.77718 -10.67948 -10.48004 -10.25510 -10.14075 -10.04270 -10.02426 -9.85799 -9.84949 -9.61555 -9.33853 -9.08026 -8.96377 -8.29259 -6.78724 -6.05230 -3.32945 0.48332 0.82533 2.53299 2.94798 3.26274 3.34278 3.48293 3.51730 3.69637 4.15554 4.21364 4.51219 4.62702 4.71176 4.87262 5.00106 5.09182 5.20678 5.21587 5.24508 5.29084 5.32606 5.47265 5.49922 5.53013 5.58153 5.70503 5.78400 5.82991 5.84943 5.90393 5.99701 6.15232 6.25837 6.31153 6.41792 6.51884 6.63386 6.68599 6.74891 6.80170 6.86798 7.09924 7.15065 7.37691 7.52548 7.58627 8.08432 8.21088 8.59682 9.17181 9.84823 10.25006 11.13894 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.018239 B = 0.003030 C = 0.002768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1534.806372 B = 9238.632804 C =10112.349506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.011 3.989 3 C -0.198 4.198 4 C 0.329 3.671 5 O -0.481 6.481 6 N -0.507 5.507 7 C 0.198 3.802 8 C -0.116 4.116 9 C -0.189 4.189 10 C 0.570 3.430 11 O -0.524 6.524 12 N -0.712 5.712 13 C 0.130 3.870 14 H 0.081 0.919 15 C -0.113 4.113 16 C -0.098 4.098 17 C -0.143 4.143 18 C 0.142 3.858 19 N -0.586 5.586 20 C -0.359 4.359 21 H 0.050 0.950 22 C -0.017 4.017 23 N -0.898 5.898 24 Si 1.058 2.942 25 H -0.286 1.286 26 H -0.293 1.293 27 H -0.293 1.293 28 C 0.142 3.858 29 H 0.086 0.914 30 H 0.079 0.921 31 H 0.076 0.924 32 H 0.145 0.855 33 H 0.402 0.598 34 H 0.089 0.911 35 H 0.086 0.914 36 H 0.085 0.915 37 H 0.398 0.602 38 H 0.081 0.919 39 H 0.053 0.947 40 H 0.045 0.955 41 H 0.047 0.953 42 H 0.064 0.936 43 H 0.046 0.954 44 H 0.079 0.921 45 H 0.024 0.976 46 H 0.270 0.730 47 H 0.019 0.981 48 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.532 21.496 -3.130 21.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.003 3.997 3 C -0.219 4.219 4 C 0.151 3.849 5 O -0.288 6.288 6 N -0.227 5.227 7 C 0.060 3.940 8 C -0.173 4.173 9 C -0.195 4.195 10 C 0.353 3.647 11 O -0.399 6.399 12 N -0.362 5.362 13 C 0.025 3.975 14 H 0.099 0.901 15 C -0.151 4.151 16 C -0.136 4.136 17 C -0.183 4.183 18 C 0.015 3.985 19 N -0.308 5.308 20 C -0.488 4.488 21 H 0.067 0.933 22 C -0.221 4.221 23 N -0.537 5.537 24 Si 0.888 3.112 25 H -0.212 1.212 26 H -0.220 1.220 27 H -0.220 1.220 28 C 0.016 3.984 29 H 0.105 0.895 30 H 0.098 0.902 31 H 0.095 0.905 32 H 0.163 0.837 33 H 0.260 0.740 34 H 0.107 0.893 35 H 0.104 0.896 36 H 0.103 0.897 37 H 0.232 0.768 38 H 0.100 0.900 39 H 0.071 0.929 40 H 0.064 0.936 41 H 0.066 0.934 42 H 0.083 0.917 43 H 0.065 0.935 44 H 0.097 0.903 45 H 0.042 0.958 46 H 0.081 0.919 47 H 0.037 0.963 48 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -0.856 19.534 -2.230 19.679 hybrid contribution -0.565 2.184 -0.389 2.290 sum -1.421 21.718 -2.619 21.922 Atomic orbital electron populations 1.20936 0.89301 1.03846 1.03900 1.20206 0.96941 0.90861 0.91719 1.21847 0.93707 0.99280 1.07084 1.19252 0.87020 0.85057 0.93578 1.84733 1.76051 1.34079 1.33975 1.67011 1.41839 0.97815 1.15989 1.21099 0.89191 0.93172 0.90560 1.20921 1.00691 0.91570 1.04133 1.20787 0.94917 0.94514 1.09258 1.17848 0.78580 0.83685 0.84547 1.90854 1.53410 1.64777 1.30901 1.46273 1.59258 1.22886 1.07819 1.21617 0.94812 0.82116 0.98951 0.90114 1.21252 0.97496 0.99077 0.97318 1.20260 0.96014 0.96915 1.00415 1.21374 0.99395 0.94506 1.03005 1.20944 0.83503 1.01300 0.92773 1.43554 1.09776 1.15476 1.62021 1.19844 1.22681 0.89545 1.16750 0.93261 1.25821 0.99521 0.95838 1.00930 1.70771 1.45395 1.38215 0.99305 0.83622 0.75970 0.76281 0.75309 1.21158 1.21977 1.21991 1.21579 0.93812 0.85604 0.97424 0.89537 0.90247 0.90525 0.83682 0.73963 0.89278 0.89556 0.89674 0.76830 0.90015 0.92872 0.93597 0.93392 0.91724 0.93487 0.90279 0.95782 0.91907 0.96324 0.93064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.05 9.69 36.01 0.35 -0.70 16 2 C 0.01 0.11 5.95 -103.96 -0.62 -0.51 16 3 C -0.20 -1.86 9.73 -39.34 -0.38 -2.24 16 4 C 0.33 3.60 7.74 -16.96 -0.13 3.47 16 5 O -0.48 -4.26 13.55 -18.19 -0.25 -4.50 16 6 N -0.51 -6.57 10.28 -9.20 -0.09 -6.67 16 7 C 0.20 2.58 6.82 -82.19 -0.56 2.02 16 8 C -0.12 -1.42 9.78 36.01 0.35 -1.07 16 9 C -0.19 -2.43 5.65 -104.82 -0.59 -3.02 16 10 C 0.57 8.46 4.28 -12.43 -0.05 8.41 16 11 O -0.52 -9.99 16.76 5.29 0.09 -9.90 16 12 N -0.71 -9.61 4.98 -55.20 -0.27 -9.89 16 13 C 0.13 2.15 2.27 -68.32 -0.15 1.99 16 14 H 0.08 1.48 6.75 -51.93 -0.35 1.13 16 15 C -0.11 -1.72 5.07 -28.02 -0.14 -1.86 16 16 C -0.10 -1.55 5.16 -29.79 -0.15 -1.70 16 17 C -0.14 -2.71 5.74 -28.58 -0.16 -2.87 16 18 C 0.14 3.22 4.89 -4.08 -0.02 3.20 16 19 N -0.59 -13.98 2.01 -171.87 -0.35 -14.32 16 20 C -0.36 -9.60 9.17 -15.06 -0.14 -9.74 16 21 H 0.05 1.34 7.97 -52.49 -0.42 0.92 16 22 C -0.02 -0.48 4.68 -17.43 -0.08 -0.56 16 23 N -0.90 -26.34 12.18 55.49 0.68 -25.66 16 24 Si 1.06 24.60 30.01 -169.99 -5.10 19.49 16 25 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 26 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 27 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 28 C 0.14 2.96 5.86 -2.76 -0.02 2.95 16 29 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.08 0.47 8.10 -51.93 -0.42 0.05 16 31 H 0.08 0.72 7.18 -51.93 -0.37 0.34 16 32 H 0.15 0.96 8.06 -52.48 -0.42 0.53 16 33 H 0.40 1.40 9.06 45.56 0.41 1.81 16 34 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.08 1.19 7.06 -51.93 -0.37 0.82 16 37 H 0.40 4.33 8.53 -40.82 -0.35 3.98 16 38 H 0.08 1.42 7.49 -51.93 -0.39 1.03 16 39 H 0.05 0.66 7.94 -51.93 -0.41 0.24 16 40 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 41 H 0.05 0.75 7.35 -51.93 -0.38 0.37 16 42 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 43 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 44 H 0.08 2.06 5.28 -51.93 -0.27 1.78 16 45 H 0.02 0.53 8.06 -51.93 -0.42 0.11 16 46 H 0.27 8.08 7.39 -40.82 -0.30 7.78 16 47 H 0.02 0.44 8.14 -51.92 -0.42 0.01 16 48 H 0.05 1.06 7.86 -51.93 -0.41 0.65 16 LS Contribution 384.62 15.07 5.80 5.80 Total: -1.00 -33.39 384.62 -8.64 -42.03 By element: Atomic # 1 Polarization: 12.48 SS G_CDS: -6.63 Total: 5.85 kcal Atomic # 6 Polarization: 0.28 SS G_CDS: -2.51 Total: -2.23 kcal Atomic # 7 Polarization: -56.50 SS G_CDS: -0.04 Total: -56.54 kcal Atomic # 8 Polarization: -14.25 SS G_CDS: -0.16 Total: -14.41 kcal Atomic # 14 Polarization: 24.60 SS G_CDS: -5.10 Total: 19.49 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -33.39 -8.64 -42.03 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034537692.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.174 kcal (2) G-P(sol) polarization free energy of solvation -33.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds